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Статті в журналах з теми "Transposable elements; repeats; evolution"
Hartley, Gabrielle, and Rachel O’Neill. "Centromere Repeats: Hidden Gems of the Genome." Genes 10, no. 3 (March 16, 2019): 223. http://dx.doi.org/10.3390/genes10030223.
Повний текст джерелаWarren, William D., Peter W. Atkinson, and David A. O'Brochta. "The Hermes transposable element from the house fly, Musca domestica, is a short inverted repeat-type element of the hobo, Ac, and Tam3 (hAT) element family." Genetical Research 64, no. 2 (October 1994): 87–97. http://dx.doi.org/10.1017/s0016672300032699.
Повний текст джерелаLower, Sarah E., Anne-Marie Dion-Côté, Andrew G. Clark, and Daniel A. Barbash. "Special Issue: Repetitive DNA Sequences." Genes 10, no. 11 (November 6, 2019): 896. http://dx.doi.org/10.3390/genes10110896.
Повний текст джерелаZhang, Peng, Wanlong Li, Bernd Friebe, and Bikram S. Gill. "Simultaneous painting of three genomes in hexaploid wheat by BAC-FISH." Genome 47, no. 5 (October 1, 2004): 979–87. http://dx.doi.org/10.1139/g04-042.
Повний текст джерелаAhmad, Syed Farhan, Worapong Singchat, Thitipong Panthum, and Kornsorn Srikulnath. "Impact of Repetitive DNA Elements on Snake Genome Biology and Evolution." Cells 10, no. 7 (July 6, 2021): 1707. http://dx.doi.org/10.3390/cells10071707.
Повний текст джерелаSessegolo, Camille, Nelly Burlet, and Annabelle Haudry. "Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies." Biology Letters 12, no. 8 (August 2016): 20160407. http://dx.doi.org/10.1098/rsbl.2016.0407.
Повний текст джерелаFattash, Isam, Rebecca Rooke, Amy Wong, Caleb Hui, Tina Luu, Priyanka Bhardwaj, and Guojun Yang. "Miniature inverted-repeat transposable elements: discovery, distribution, and activity." Genome 56, no. 9 (September 2013): 475–86. http://dx.doi.org/10.1139/gen-2012-0174.
Повний текст джерелаWu, Changcheng, and Jian Lu. "Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution." Genes 10, no. 5 (May 6, 2019): 338. http://dx.doi.org/10.3390/genes10050338.
Повний текст джерелаYu, Zhihui, Stephen I. Wright, and Thomas E. Bureau. "Mutator-like Elements in Arabidopsis thaliana: Structure, Diversity and Evolution." Genetics 156, no. 4 (December 1, 2000): 2019–31. http://dx.doi.org/10.1093/genetics/156.4.2019.
Повний текст джерелаHertweck, Kate L. "Assembly and comparative analysis of transposable elements from low coverage genomic sequence data in Asparagales." Genome 56, no. 9 (September 2013): 487–94. http://dx.doi.org/10.1139/gen-2013-0042.
Повний текст джерелаДисертації з теми "Transposable elements; repeats; evolution"
Coy, Monique Royer. "Dd34e Dna Transposable Elements of Mosquitoes: Whole-Genome Survey, Evolution, and Transposition." Diss., Virginia Tech, 2007. http://hdl.handle.net/10919/28120.
Повний текст джерелаPh. D.
Pietzenuk, Björn [Verfasser], Maarten [Gutachter] Koornneef, and Achim [Gutachter] Tresch. "Repeated evolution of heat responsiveness among Brassicaceae COPIA transposable elements / Björn Pietzenuk. Gutachter: Maarten Koornneef ; Achim Tresch." Köln : Universitäts- und Stadtbibliothek Köln, 2015. http://d-nb.info/1105644898/34.
Повний текст джерелаČernohub, Jan. "Predikce transpozonů v DNA." Master's thesis, Vysoké učení technické v Brně. Fakulta informačních technologií, 2014. http://www.nusl.cz/ntk/nusl-236030.
Повний текст джерелаKarzand, Masoud. "Impact of transposable elements and repeats on mappability across human genome." Thesis, McGill University, 2014. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=123270.
Повний текст джерелаDans cette thèse, nous étudions la "visibilité" du génome humain par des méthodes séquençage modernes et nous regardons quelles sont les raisons qui pourraient causer l'absence de visibilité dans une région donnée. Nous montrons que les éléments transposables et les duplications de génome sont les principaux obstables à la visibilité de régions génomiques. Dans cette analyse, nous avons utilisé des reads simulés, de types individuels ou pairés, de 6 longueurs différentes et nous avons utilisé BWA pour assigner ces reads au génome humain. Nous avons supposé que la position dans le génome est visible s'il y a au moins un read unique assigné à cette position. Nous avons examiné les régions non visibles et la fraction d'éléments transposables ou des duplications de génome correspondant à ces régions. Nous avons également examiné la distribution d'âge des éléments transposables et des duplications de génome qui sont dans les régions non visibles. Nos résultats montrent que les régions qui sont des éléments plus jeunes et plus transposable sont plus difficiles à séquencer. Afin de comparer nos données simulées avec les données réelles de séquençage, nous avons utilisé des données de reséquençage provenant d'un séquençage Illumina pour comparer la couverture observée du génome avec nos résultats provenant de données simulées. Nous montrons que 4,1% du génome qui est visible dans nos simulations a une faible couverture dans les données de séquençage réelles. Nous avons également étudié les raisons pouvant expliquer une faible couverture dans les régions visibles. Les résultats de nos simulations montrent l'impact des éléments transposables et les autres répétitions sur la visibilité dans le génome humain et nous montrent que l'utilisation de long reads pairés améliorent la visibilité du génome humain.
Styles, Pamela. "The evolution of transposable elements in humans and Drosophila." Thesis, University of Nottingham, 2010. http://eprints.nottingham.ac.uk/11241/.
Повний текст джерелаVives, i. Cobo Cristina. "Impact of transposable elements in the evolution of plant genomes." Doctoral thesis, Universitat Autònoma de Barcelona, 2017. http://hdl.handle.net/10803/456558.
Повний текст джерелаEls transposons són elements genètics que tenen la capacitat de modificar la seva posició dins el genoma. Com a conseqüència, tenen un impacte en l’evolució del genomes inactivant o alterant els gens de l’hoste i proporcionant noves funcions gèniques. Els transposons ocupen una fracció important de tots els genomes seqüenciats. L’objectiu del treball presentat en aquesta tesis consisteix en estudiar els diversos impactes de transposons tant en els gens com en l’evolució dels genomes de diferents espècies de plantes. En aquesta tesis, s’ha analitzat la fracció de transposons en meló i cogombre, dues espècies molt properes. Els resultats suggereixen que els transposons han proliferat més en meló, causant un augment de la mida del genoma. Els transposons no es troben distribuïts habitualment de forma homogènia i tendeixen a acumular-se en les regions pericentromèriques heterocromàtiques, com el cas dels genomes de meló i cogombre. Curiosament, els resultats presentats mostren que els transposons han expandit les regions pericentromèriques en meló, demostrant que els transposons poden modificar l’estructura dels genomes. El número de genomes de referència de plantes disponibles i el número de varietats reseqüenciades ha crescut exponencialment permetent estudiar la correlació entre les variacions genètiques i fenotípiques. El propòsit del treball resumit en la segona part d’aquesta tesis consisteix en analitzar l’impacte dels transposons en genomes d’espècies cultivables detectant els polimorfismes deguts a la presència o absència de transposó en un locus concret, comparant una varietat reseqüenciada respecte al seu genoma de referència. L’anàlisi d’insercions polimòrfiques de transposons s’ha realitzat en tres espècies diferents: meló, palmera datilera i Physcomitrella patens. Els resultats obtinguts poden ajudar a identificar famílies de transposons actives recentment i proporcionar informació nova sobre polimorfismes genètics que poden estar lligats a caràcters seleccionats durant l’evolució recent d’aquestes tres espècies. Per tal d’estudiar l’impacte de la transposició en la regulació gènica, el treball presentat en la tercera part d’aquesta tesis se centra en la capacitat dels transposons en amplificar i redistribuir llocs d’unió a factors de transcripció. Els resultats mostren que algunes famílies de MITEs s’han amplificat i han redistribuït els llocs d’unió del factor de transcripció E2F durant l’evolució d’algunes espècies del gènere Brassica. L’objectiu d’aquest treball és avaluar l’impacte dels llocs d’unió a E2F localitzats dins de transposons reprogramant la regulació de gens de la xarxa transcripcional de E2F. Els resultats obtinguts han determinat que els llocs d’unió a E2F localitzats dins de transposons tenen la capacitat d’unir-se als factors de transcripció de E2F in vivo, independentment de les marques epigenètiques de la regió. A més a més, els transposons s’han convertit en eines genètiques útils per generar col·leccions de mutants en animals i plantes degut a la seva capacitat d’integrar còpies en el genoma. En plantes, alguns retrotransposons s’integren preferentment a prop de gens sent particularment interessants per la mutagènesis. Entre tots ells, el retrotransposó de tabac Tnt1 s’ha utilitzat per generar mutants en diferents espècies de plantes. L’última part d’aquesta tesis consisteix en analitzar la capacitat del retrotransposó de tabac Tnt1 en transposar en la molsa Physcomitrella patens. S’ha demostrat que Tnt1 transposa eficientment en P. patens i s’integra preferentment a prop de gens. Aquest estudi presenta vectors derivats de Tnt1 dissenyats per transposar amb alta eficiència i ser utilitzats per generar col·leccions de mutants amb insercions estables en aquest briòfit.
Transposable elements are genetic elements that have the capacity to modify their position within the genome. As a consequence, they impact the evolution of genomes by inactivating or altering host genes and by providing new gene functions. Transposons account for an important fraction of all sequenced genomes. The goal of the work presented in this dissertation is to investigate the diverse impacts of transposons on gene and genome evolution in different plant species. The transposon content has been analyzed in melon and cucumber, two closely related species. The results suggest that transposons have proliferated to a greater extend in melon, causing an increase of its genome size. Transposable elements are usually not homogenously distributed and tend to accumulate in heterochromatic pericentromeric regions. This is also the case of melon and cucumber genomes. Interestingly, the results presented show that transposons have expanded the pericentromeric regions in melon, showing that transposons can modify the structure of genomes. The number of plant reference genomes made available and the number of varieties resequenced is growing exponentially, and this is allowing to study the correlation between genetic and phenotypic variations. The purpose of the work summarized in the second part of this dissertation is to analyze the impact of transposons in crop genomes by detecting polymorphisms due to the presence or absence of transposon at a given locus, comparing one resequenced variety respect to the reference genome. The analysis of transposon-related polymorphism insertions has been performed in three different species: melon, date palm and Physcomitrella patens. The results obtained can help to identify the transposon families recently active and to provide new information on genetic polymorphisms that can be linked to traits selected during the recent evolution of these three species. In order to study the impact of transposition on gene regulation, the work reported in the third part of this dissertation focuses on the capacity of transposons to amplify and redistribute transcription factor binding sites. The results show that some MITE families have amplified and redistributed the binding sites of E2F transcription factor during Brassica evolution. The goal of this study was to assess the impact of E2F binding sites located within a transposon in reprogramming gene regulation on the E2F transcriptional network. The results obtained have determined that E2F binding sites located within transposons have the capacity to bind E2F transcription factor in vivo, regardless the epigenetic mark context. Moreover, transposons have become a useful genetic tool to generate mutant collections in animals and plants due to the capacity to insert copies into the genome. In plants, some retrotransposons have been shown to integrate preferentially near genes making them particularly interesting for mutagenesis. Among them, the tobacco retrotransposon Tnt1 has been used to generate mutants in different plant species. The last part of this dissertation consists in analyzing the capacity of the tobacco retrotransposon Tnt1 to transpose in the moss Physcomitrella patens. It shows that Tnt1 efficiently transposes in P. patens and inserts preferentially in genic regions. This work presents Tnt1-derived vectors designed for high efficiency transposition that could be used to generate stable insertion mutant collections in this bryophyte species.
Piriyapongsa, Jittima. "Origin and evolution of eukaryotic gene sequences derived from transposable elements." Diss., Atlanta, Ga. : Georgia Institute of Technology, 2008. http://hdl.handle.net/1853/24766.
Повний текст джерелаCommittee Chair: Jordan, I. King; Committee Member: Borodovsky, Mark; Committee Member: Bunimovich, Leonid; Committee Member: Choi, Jung; Committee Member: McDonald, John.
Copetti, Dario, Jianwei Zhang, Baidouri Moaine El, Dongying Gao, Jun Wang, Elena Barghini, Rosa M. Cossu, et al. "RiTE database: a resource database for genus-wide rice genomics and evolutionary biology." BioMed Central Ltd, 2015. http://hdl.handle.net/10150/610281.
Повний текст джерелаWang, Jun, Yeisoo Yu, Feng Tao, Jianwei Zhang, Dario Copetti, Dave Kudrna, Jayson Talag, Seunghee Lee, Rod A. Wing, and Chuanzhu Fan. "DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements." BIOMED CENTRAL LTD, 2016. http://hdl.handle.net/10150/614757.
Повний текст джерелаCharles, Mathieu. "Evolution des génomes du blé (genres aegilops et Triticum) au sein des Poaceae : dynamique rapide de l'espace occupé par les éléments transposables et conservation relative des gènes." Thesis, Evry-Val d'Essonne, 2010. http://www.theses.fr/2009EVRY0023/document.
Повний текст джерелаMy PhD aims to characterize dynamic evolution and organization of wheat genomes from différent species (Triticum and Aegilops genera) in relation to transposable element (TE) proliferation in their genomes (>80%), polyploidizations and synteny with other Poaceae species. By constituting and comparing representative genomic sequences and analyzing haplotype variability of the wheat genomes, I have characterized dynamics and differential proliferation of TEs, as resulting from the combinations of their insertions and deletions. Mean replacement rate of the TE space, which measures sequence differences due to insertion and removal of TEs between two haplotypes, was estimated to 86% per one million year (My). This is more important than the well-documented haplotype variability found in maize. It was observed that TE insertions and DNA elimination by illegitimate recombination (implicating several ‘tens’ of kb) as well as homologous recombination between divergent haplotypes represent the main molecular basis for rapid change of the TE space. At a longer evolutionary scale (60 My), I have compared gene conservation at the Ha locus region between different Poaceae species. The comparative genome analysis and evolutionary comparison with genes encoding grain reserve proteins of grasses suggest that an ancestral Ha-like gene emerged, as a new member of the Prolamin gene family, in a common ancestor of the Pooideae (wheat and Brachypodium from the Triticeae and Brachypodieae tribes) and Ehrhartoideae (rice), between 60 and 50 My, after their divergence from Panicoideae (Sorghum)
Книги з теми "Transposable elements; repeats; evolution"
1947-, McDonald John F., ed. Transposable elements and evolution. Dordrecht: Kluwer, 1993.
Знайти повний текст джерелаMcDonald, J. F., ed. Transposable Elements and Evolution. Dordrecht: Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-2028-9.
Повний текст джерелаMcDonald, John F., ed. Transposable Elements and Genome Evolution. Dordrecht: Springer Netherlands, 2000. http://dx.doi.org/10.1007/978-94-011-4156-7.
Повний текст джерелаCapy, Pierre, ed. Evolution and Impact of Transposable Elements. Dordrecht: Springer Netherlands, 1997. http://dx.doi.org/10.1007/978-94-011-4898-6.
Повний текст джерелаJonathan, Prince, ed. Survival of the Sickest: The Surprising Connections Between Disease and Longevity. London: Harper, 2008.
Знайти повний текст джерелаMoalem, Sharon. Survival of the Sickest: A Medical Maverick Discovers the Surprising Connections Between Disease and Longevity. New York: HarperCollins e-books, 2007.
Знайти повний текст джерелаJonathan, Prince, ed. Survival of the Sickest: A Medical Maverick Discovers Why We Need Disease. New York: William Morrow, 2007.
Знайти повний текст джерелаMoalem, Sharon, and Jonathan Prince. Survival of the Sickest: A Medical Maverick Discovers Why We Need Disease. Pymble, NSW, Australia: William Morrow, 2007.
Знайти повний текст джерелаMcDonald, John F. Transposable Elements and Evolution. Springer, 2012.
Знайти повний текст джерелаMcDonald, J. F. Transposable Elements and Evolution. Springer, 2012.
Знайти повний текст джерелаЧастини книг з теми "Transposable elements; repeats; evolution"
Roy, Astrid M., Marion L. Carroll, David H. Kass, Son V. Nguyen, Abdel-Halim Salem, Mark A. Batzer, and Prescott L. Deininger. "Recently integrated human Alu repeats: finding needles in the haystack." In Transposable Elements and Genome Evolution, 149–61. Dordrecht: Springer Netherlands, 2000. http://dx.doi.org/10.1007/978-94-011-4156-7_17.
Повний текст джерелаKidwell, M. G. "Horizontal transfer of P elements and other short inverted repeat transposons." In Transposable Elements and Evolution, 158–72. Dordrecht: Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-2028-9_12.
Повний текст джерелаChen, Jiongjiong, Qun Hu, Chen Lu, and Hanhui Kuang. "Evolutionary Genomics of Miniature Inverted-Repeat Transposable Elements (MITEs) in Plants." In Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life, 157–68. Cham: Springer International Publishing, 2014. http://dx.doi.org/10.1007/978-3-319-07623-2_7.
Повний текст джерелаTaylor, Darren, and Miguel R. Branco. "Inferring Protein-DNA Binding Profiles at Interspersed Repeats Using HiChIP and PAtChER." In Transposable Elements, 199–214. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2883-6_11.
Повний текст джерелаWicker, Thomas. "So Many Repeats and So Little Time: How to Classify Transposable Elements." In Plant Transposable Elements, 1–15. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-642-31842-9_1.
Повний текст джерелаMcDonald, John F. "Transposable elements and evolution." In Transposable Elements and Evolution, 1–4. Dordrecht: Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-2028-9_1.
Повний текст джерелаHickey, D. A. "Evolutionary dynamics of transposable elements in prokaryotes and eukaryotes." In Transposable Elements and Evolution, 142–48. Dordrecht: Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-2028-9_10.
Повний текст джерелаWichman, H. A., R. A. Van Den Bussche, M. J. Hamilton, and R. J. Baker. "Transposable elements and the evolution of genome organization in mammals." In Transposable Elements and Evolution, 149–57. Dordrecht: Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-2028-9_11.
Повний текст джерелаBucheton, A., C. Vaury, M. C. Chaboissier, P. Abad, A. Pélisson, and M. Simonelig. "I elements and the Drosophila genome." In Transposable Elements and Evolution, 173–91. Dordrecht: Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-2028-9_13.
Повний текст джерелаBoussy, Ian A., and Georges Periquet. "The transposable element hobo in Drosophila melanogaster and related species." In Transposable Elements and Evolution, 192–200. Dordrecht: Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-2028-9_14.
Повний текст джерелаТези доповідей конференцій з теми "Transposable elements; repeats; evolution"
Jin, Lingling, and Ian McQuillan. "Prediction of transposable elements evolution using tabu search." In 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2018. http://dx.doi.org/10.1109/bibm.2018.8621478.
Повний текст джерелаЗвіти організацій з теми "Transposable elements; repeats; evolution"
Levy, Avraham A., and Virginia Walbot. Regulation of Transposable Element Activities during Plant Development. United States Department of Agriculture, August 1992. http://dx.doi.org/10.32747/1992.7568091.bard.
Повний текст джерелаLiu, Zhanjiang John, Rex Dunham, and Boaz Moav. Developmental and Evaluation of Advanced Expression Vectors with Both Enhanced Integration and Stable Expression for Transgenic Farmed Fish. United States Department of Agriculture, December 2001. http://dx.doi.org/10.32747/2001.7585196.bard.
Повний текст джерела