Добірка наукової літератури з теми "Protein and gene networks"
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Статті в журналах з теми "Protein and gene networks"
Akker, Erik van den, Bas Verbruggen, Bas Heijmans, Marian Beekman, Joost Kok, Eline Slagboom, and Marcel Reinders. "Integrating Protein-Protein Interaction Networks with Gene- Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis." Journal of Integrative Bioinformatics 8, no. 2 (June 1, 2011): 222–38. http://dx.doi.org/10.1515/jib-2011-188.
Повний текст джерелаD’Arcy, Cian, Olivia Bass, Philipp Junk, Thomas Sevrin, Giorgio Oliviero, Kieran Wynne, Melinda Halasz, and Christina Kiel. "Disease–Gene Networks of Skin Pigmentation Disorders and Reconstruction of Protein–Protein Interaction Networks." Bioengineering 10, no. 1 (December 21, 2022): 13. http://dx.doi.org/10.3390/bioengineering10010013.
Повний текст джерелаAmoutzias, Gregory D., David L. Robertson, and Erich Bornberg-Bauer. "The Evolution of Protein Interaction Networks in Regulatory Proteins." Comparative and Functional Genomics 5, no. 1 (2004): 79–84. http://dx.doi.org/10.1002/cfg.365.
Повний текст джерелаAloraini, Adel, and Karim M. ElSawy. "Potential Breast Anticancer Drug Targets Revealed by Differential Gene Regulatory Network Analysis and Molecular Docking: Neoadjuvant Docetaxel Drug as a Case Study." Cancer Informatics 17 (January 1, 2018): 117693511875535. http://dx.doi.org/10.1177/1176935118755354.
Повний текст джерелаWang, Li Qin, Gui Qiang Chen, and Hong Hai Zhao. "Construction of Regulatory Boolean Networks Based on Expression Profiles Data Noise." Advanced Materials Research 588-589 (November 2012): 2046–50. http://dx.doi.org/10.4028/www.scientific.net/amr.588-589.2046.
Повний текст джерелаChatzaroulas, Evangelos, Vytenis Sliogeris, Pedro Victori, Francesca M. Buffa, Sotiris Moschoyiannis, and Roman Bauer. "A Structural Characterisation of the Mitogen-Activated Protein Kinase Network in Cancer." Symmetry 14, no. 5 (May 16, 2022): 1009. http://dx.doi.org/10.3390/sym14051009.
Повний текст джерелаLundström, Jesper, Johan Björkegren, and Jesper Tegnér. "Evidence of Highly Regulated Genes (in-Hubs) in Gene Networks of Saccharomyces Cerevisiae." Bioinformatics and Biology Insights 2 (January 2008): BBI.S853. http://dx.doi.org/10.4137/bbi.s853.
Повний текст джерелаWahab Khattak, Fazal, Yousef Salamah Alhwaiti, Amjad Ali, Mohammad Faisal, and Muhammad Hameed Siddiqi. "Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)." Journal of Healthcare Engineering 2021 (January 16, 2021): 1–9. http://dx.doi.org/10.1155/2021/6623904.
Повний текст джерелаNguyen, Cao D., Katheleen J. Gardiner, and Krzysztof J. Cios. "Protein annotation from protein interaction networks and Gene Ontology." Journal of Biomedical Informatics 44, no. 5 (October 2011): 824–29. http://dx.doi.org/10.1016/j.jbi.2011.04.010.
Повний текст джерелаKim, Yoonbee, Jong-Hoon Park, and Young-Rae Cho. "Network-Based Approaches for Disease-Gene Association Prediction Using Protein-Protein Interaction Networks." International Journal of Molecular Sciences 23, no. 13 (July 3, 2022): 7411. http://dx.doi.org/10.3390/ijms23137411.
Повний текст джерелаДисертації з теми "Protein and gene networks"
Gunnarsson, Ida. "Deriving Protein Networks by Combining Gene Expression and Protein Chip Analysis." Thesis, University of Skövde, Department of Computer Science, 2002. http://urn.kb.se/resolve?urn=urn:nbn:se:his:diva-706.
Повний текст джерелаIn order to derive reliable protein networks it has recently been suggested that the combination of information from both gene and protein level is required. In this thesis a combination of gene expression and protein chip analysis was performed when constructing protein networks. Proteins with high affinity to the same substrates and encoded by genes with high correlation is here thought to constitute reliable protein networks. The protein networks derived are unfortunately not as reliable as were hoped for. According to the tests performed, the method derived in this thesis does not perform more than slightly better than chance. However, the poor results can depend on the data used, since mismatching and shortage of data has been evident.
Lehtinen, S. K. "Gene and protein networks in understanding cellular function." Thesis, University College London (University of London), 2015. http://discovery.ucl.ac.uk/1470874/.
Повний текст джерелаAgarwal, Sumeet. "Networks in nature : dynamics, evolution, and modularity." Thesis, University of Oxford, 2012. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.564283.
Повний текст джерелаYalamanchili, Hari Krishna. "Computational approaches for protein functions and gene association networks." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2014. http://hdl.handle.net/10722/206477.
Повний текст джерелаpublished_or_final_version
Biochemistry
Doctoral
Doctor of Philosophy
Shelton, Rebecca Kay. "Parameter Identifiability and Estimation in Gene and Protein Interaction Networks." Thesis, Virginia Tech, 2008. http://hdl.handle.net/10919/32702.
Повний текст джерелаMaster of Science
King, James Lowell. "Gene Ontology-Guided Force-Directed Visualization of Protein Interaction Networks." Diss., NSUWorks, 2019. https://nsuworks.nova.edu/gscis_etd/1066.
Повний текст джерелаYasar, Sevgi. "Multi-resolution Visualization Of Large Scale Protein Networks Enriched With Gene Ontology Annotations." Master's thesis, METU, 2009. http://etd.lib.metu.edu.tr/upload/12611132/index.pdf.
Повний текст джерелаZhu, Shaoming. "Multiscale analysis of protein functions and stochastic modelling of gene transcriptional regulatory networks." Thesis, Queensland University of Technology, 2010. https://eprints.qut.edu.au/41693/1/Shaoming_Zhu_Thesis.pdf.
Повний текст джерелаBrettner, Leandra M., and Joanna Masel. "Protein stickiness, rather than number of functional protein-protein interactions, predicts expression noise and plasticity in yeast." BioMed Central, 2012. http://hdl.handle.net/10150/610103.
Повний текст джерелаAragüés, Peleato Ramón. "Protein Interaction networks and their applications to protein characterization and cancer genes prediction." Doctoral thesis, Universitat Pompeu Fabra, 2007. http://hdl.handle.net/10803/7148.
Повний текст джерелаThe importance of understanding cellular processes prompted the development of experimental approaches that detect protein-protein interactions. Here, we describe a software platform called PIANA (Protein Interactions And Network Analysis) that integrates interaction data from multiple sources and automates the analysis of protein interaction networks. Moreover, we describe a method that delineates interacting motifs by relying on the observation that proteins with common interaction partners tend to interact with these partners through the same interacting motif. We find that highly connected proteins (i.e., hubs) with multiple interacting motifs are more likely to be essential for cellular viability than hubs with one or two interacting motifs. Furthermore, we present a method that predicts cancer genes by integrating protein interaction networks, differential expression studies and structural, functional and evolutionary properties. For a sensitivity of 1%, the positive predictive value is 71%, which outperforms the use of any of the methods independently.
Книги з теми "Protein and gene networks"
Protein networks and pathway analysis. Dordrecht: Humana Press, 2009.
Знайти повний текст джерелаFrishman, Dmitrij. Modern genome annotation: The BioSapiens Network. New York: Springer, 2009.
Знайти повний текст джерелаModern genome annotation: The BioSapiens Network. New York: Springer, 2009.
Знайти повний текст джерелаNagai, Ryōzō. The biology of Krüppel-like factors. Tokyo: Springer, 2009.
Знайти повний текст джерелаCanzar, Stefan, and Francisca Rojas Ringeling, eds. Protein-Protein Interaction Networks. New York, NY: Springer US, 2020. http://dx.doi.org/10.1007/978-1-4939-9873-9.
Повний текст джерелаPanchenko, Anna, and Teresa Przytycka, eds. Protein-protein Interactions and Networks. London: Springer London, 2008. http://dx.doi.org/10.1007/978-1-84800-125-1.
Повний текст джерелаKasid, Usha, and Robert Clarke, eds. Cancer Gene Networks. New York, NY: Springer New York, 2017. http://dx.doi.org/10.1007/978-1-4939-6539-7.
Повний текст джерелаDeplancke, Bart, and Nele Gheldof, eds. Gene Regulatory Networks. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-61779-292-2.
Повний текст джерелаWeber, Wilfried, and Martin Fussenegger, eds. Synthetic Gene Networks. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-61779-412-4.
Повний текст джерелаSanguinetti, Guido, and Vân Anh Huynh-Thu, eds. Gene Regulatory Networks. New York, NY: Springer New York, 2019. http://dx.doi.org/10.1007/978-1-4939-8882-2.
Повний текст джерелаЧастини книг з теми "Protein and gene networks"
Bharathavikru, Ruthrothaselvi, and Alex von Kriegsheim. "WT1-Associated Protein–Protein Interaction Networks." In The Wilms' Tumor (WT1) Gene, 189–96. New York, NY: Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-4023-3_16.
Повний текст джерелаBenuskova, Lubica, and Nikola Kasabov. "Gene/Protein Interactions — Modeling Gene Regulatory Networks (GRN)." In Computational Neurogenetic Modeling, 137–53. Boston, MA: Springer US, 2007. http://dx.doi.org/10.1007/978-0-387-48355-9_7.
Повний текст джерелаWestra, Ronald L., Goele Hollanders, Geert Jan Bex, Marc Gyssens, and Karl Tuyls. "The Identification of Dynamic Gene-Protein Networks." In Knowledge Discovery and Emergent Complexity in Bioinformatics, 157–70. Berlin, Heidelberg: Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/978-3-540-71037-0_11.
Повний текст джерелаChoi, Yunkyu, Seok Kim, Gwan-Su Yi, and Jinah Park. "Protein-Protein Interaction Network and Gene Ontology." In Future Application and Middleware Technology on e-Science, 159–69. Boston, MA: Springer US, 2009. http://dx.doi.org/10.1007/978-1-4419-1719-5_16.
Повний текст джерелаBhalla, Parinishtha, Anukriti Verma, Bhawna Rathi, Shivani Sharda, and Pallavi Somvanshi. "Exploring Molecular Signatures in Spondyloarthritis: A Step Towards Early Diagnosis." In Proceedings of the Conference BioSangam 2022: Emerging Trends in Biotechnology (BIOSANGAM 2022), 142–55. Dordrecht: Atlantis Press International BV, 2022. http://dx.doi.org/10.2991/978-94-6463-020-6_15.
Повний текст джерелаChen, Gang, and Jianxin Wang. "Biological Networks-Based Analysis of Gene Expression Signatures." In Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics, 495–506. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2013. http://dx.doi.org/10.1002/9781118567869.ch26.
Повний текст джерелаErten, Sinan, Gurkan Bebek, and Mehmet Koyutürk. "Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks." In Lecture Notes in Computer Science, 54–68. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-20036-6_7.
Повний текст джерелаShamir, Ron. "Gene Regulation, Protein Networks and Disease: A Computational Perspective." In Combinatorial Pattern Matching, 1. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-642-31265-6_1.
Повний текст джерелаMorshed, Nizamul, Madhu Chetty, and Nguyen Xuan Vinh. "FusGP: Bayesian Co-learning of Gene Regulatory Networks and Protein Interaction Networks." In Neural Information Processing, 369–77. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-642-34500-5_44.
Повний текст джерелаTheofilatos, Konstantinos, Christos Dimitrakopoulos, Maria Antoniou, Efstratios Georgopoulos, Stergios Papadimitriou, Spiros Likothanassis, and Seferina Mavroudi. "Efficient Computational Prediction and Scoring of Human Protein-Protein Interactions Using a Novel Gene Expression Programming Methodology." In Engineering Applications of Neural Networks, 472–81. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-642-32909-8_48.
Повний текст джерелаТези доповідей конференцій з теми "Protein and gene networks"
Towfic, Fadi, M. Heather West Greenlee, and Vasant Honavar. "Detection of Gene Orthology Based on Protein-Protein Interaction Networks." In 2009 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2009. http://dx.doi.org/10.1109/bibm.2009.85.
Повний текст джерелаYang, Shu, Lisa Pham, Lisa M. Christadore, Scott Schaus, and Eric D. Kolaczyk. "Multiscale gene sets from protein interaction networks." In 2013 IEEE Global Conference on Signal and Information Processing (GlobalSIP). IEEE, 2013. http://dx.doi.org/10.1109/globalsip.2013.6736908.
Повний текст джерелаNARIAI, N., S. KIM, S. IMOTO, and S. MIYANO. "USING PROTEIN-PROTEIN INTERACTIONS FOR REFINING GENE NETWORKS ESTIMATED FROM MICROARRAY DATA BY BAYESIAN NETWORKS." In Proceedings of the Pacific Symposium. WORLD SCIENTIFIC, 2003. http://dx.doi.org/10.1142/9789812704856_0032.
Повний текст джерелаYao, Huaxiong, Mengxiao Cui, Wei Li, Ziwei Wang, and Yuxiang Zhu. "Correlating interactions with gene expressions to detect protein complexes in protein interaction networks." In 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2014. http://dx.doi.org/10.1109/bibm.2014.6999279.
Повний текст джерелаYoung-Rae Cho, Woochang Hwang, and Aidong Zhang. "Modularization of Protein Interaction Networks by Incorporating Gene Ontology Annotations." In 2007 4th Symposium on Computational Intelligence in Bioinformatics and Computational Biology. IEEE, 2007. http://dx.doi.org/10.1109/cibcb.2007.4221228.
Повний текст джерелаCerri, Ricardo, Rodrigo C. Barros, and Andre C. P. L. F. de Carvalho. "Hierarchical classification of Gene Ontology-based protein functions with neural networks." In 2015 International Joint Conference on Neural Networks (IJCNN). IEEE, 2015. http://dx.doi.org/10.1109/ijcnn.2015.7280474.
Повний текст джерелаWang, Sheng, Jianzhu Ma, Michael Ku Yu, Fan Zheng, Edward W. Huang, Jiawei Han, Jian Peng, and Trey Ideker. "Annotating gene sets by mining large literature collections with protein networks." In Pacific Symposium on Biocomputing 2018. WORLD SCIENTIFIC, 2017. http://dx.doi.org/10.1142/9789813235533_0055.
Повний текст джерелаMassanet-Vila, R., Francesc Fernandez Albert, P. Caminal, and A. Perera. "Network-based enrichment analysis of gene expression through protein-protein interaction data." In 2012 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). IEEE, 2012. http://dx.doi.org/10.1109/embc.2012.6347438.
Повний текст джерелаSmalter, Aaron, Seak Fei Lei, and Xue-wen Chen. "Human Disease-Gene Classification with Integrative Sequence-Based and Topological Features of Protein-Protein Interaction Networks." In 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007). IEEE, 2007. http://dx.doi.org/10.1109/bibm.2007.47.
Повний текст джерелаZeng, Min, Min Li, Zhihui Fei, Fang-Xiang Wu, Yaohang Li, and Yi Pan. "A Deep Learning Framework for Identifying Essential Proteins Based on Protein-Protein Interaction Network and Gene Expression Data." In 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2018. http://dx.doi.org/10.1109/bibm.2018.8621551.
Повний текст джерелаЗвіти організацій з теми "Protein and gene networks"
Fromm, A., Avihai Danon, and Jian-Kang Zhu. Genes Controlling Calcium-Enhanced Tolerance to Salinity in Plants. United States Department of Agriculture, March 2003. http://dx.doi.org/10.32747/2003.7585201.bard.
Повний текст джерелаLi, Li, Joseph Burger, Nurit Katzir, Yaakov Tadmor, Ari Schaffer, and Zhangjun Fei. Characterization of the Or regulatory network in melon for carotenoid biofortification in food crops. United States Department of Agriculture, April 2015. http://dx.doi.org/10.32747/2015.7594408.bard.
Повний текст джерелаWolf, Shmuel, and William J. Lucas. Involvement of the TMV-MP in the Control of Carbon Metabolism and Partitioning in Transgenic Plants. United States Department of Agriculture, October 1999. http://dx.doi.org/10.32747/1999.7570560.bard.
Повний текст джерелаSiuzdak, Gary. Ecosystems and Networks Integrated with Genes and Molecular Assemblies (ENIGMA): Component 5: Imaging Protein Conformations, Shapes & Assemblies in Solution & Administration project (Final Scientific/Technical Report, Subcontract No. 6974584). Office of Scientific and Technical Information (OSTI), June 2021. http://dx.doi.org/10.2172/1797991.
Повний текст джерелаLers, Amnon, and Gan Susheng. Study of the regulatory mechanism involved in dark-induced Postharvest leaf senescence. United States Department of Agriculture, January 2009. http://dx.doi.org/10.32747/2009.7591734.bard.
Повний текст джерелаBarg, Rivka, Erich Grotewold, and Yechiam Salts. Regulation of Tomato Fruit Development by Interacting MYB Proteins. United States Department of Agriculture, January 2012. http://dx.doi.org/10.32747/2012.7592647.bard.
Повний текст джерелаSomerville, Ronald L. Novel Approaches to the Characterization of Specific Protein-Protein Interactions Important in Gene Expression. Fort Belvoir, VA: Defense Technical Information Center, October 1994. http://dx.doi.org/10.21236/ada300480.
Повний текст джерелаSomerville, Ronald L. Novel Approaches to the Characterization of Specific Protein-Protein Interactions Important in Gene Expression. Fort Belvoir, VA: Defense Technical Information Center, October 1995. http://dx.doi.org/10.21236/ada300572.
Повний текст джерелаGreenspan, Ralph J. Gene Networks Underlying Chronic Sleep Deprivation in Drosophila. Fort Belvoir, VA: Defense Technical Information Center, June 2014. http://dx.doi.org/10.21236/ada610340.
Повний текст джерелаSanders, Michael M. Regulation of the Multidrug Resistance-Associated Protein Gene by Estrogen. Fort Belvoir, VA: Defense Technical Information Center, March 2001. http://dx.doi.org/10.21236/ada410077.
Повний текст джерела