Статті в журналах з теми "Unique molecular identifiers"
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Schmierer, Bernhard, Sandeep K. Botla, Jilin Zhang, Mikko Turunen, Teemu Kivioja, and Jussi Taipale. "CRISPR/Cas9 screening using unique molecular identifiers." Molecular Systems Biology 13, no. 10 (October 2017): 945. http://dx.doi.org/10.15252/msb.20177834.
Повний текст джерелаIslam, Saiful, Amit Zeisel, Simon Joost, Gioele La Manno, Pawel Zajac, Maria Kasper, Peter Lönnerberg, and Sten Linnarsson. "Quantitative single-cell RNA-seq with unique molecular identifiers." Nature Methods 11, no. 2 (December 22, 2013): 163–66. http://dx.doi.org/10.1038/nmeth.2772.
Повний текст джерелаLiu, Daniel. "Algorithms for efficiently collapsing reads with Unique Molecular Identifiers." PeerJ 7 (December 16, 2019): e8275. http://dx.doi.org/10.7717/peerj.8275.
Повний текст джерелаKivioja, Teemu, Anna Vähärautio, Kasper Karlsson, Martin Bonke, Martin Enge, Sten Linnarsson, and Jussi Taipale. "Counting absolute numbers of molecules using unique molecular identifiers." Nature Methods 9, no. 1 (November 20, 2011): 72–74. http://dx.doi.org/10.1038/nmeth.1778.
Повний текст джерелаJohansson, Gustav, Melita Kaltak, Cristiana Rîmniceanu, Avadhesh K. Singh, Jan Lycke, Clas Malmeström, Michael Hühn, Outi Vaarala, Susanna Cardell, and Anders Ståhlberg. "Ultrasensitive DNA Immune Repertoire Sequencing Using Unique Molecular Identifiers." Clinical Chemistry 66, no. 9 (August 20, 2020): 1228–37. http://dx.doi.org/10.1093/clinchem/hvaa159.
Повний текст джерелаPflug, Florian G., and Arndt von Haeseler. "TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers." Bioinformatics 34, no. 18 (April 16, 2018): 3137–44. http://dx.doi.org/10.1093/bioinformatics/bty283.
Повний текст джерелаClement, Kendell, Rick Farouni, Daniel E. Bauer, and Luca Pinello. "AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing." Bioinformatics 34, no. 13 (June 27, 2018): i202—i210. http://dx.doi.org/10.1093/bioinformatics/bty264.
Повний текст джерелаBabnigg, György, and Carol S. Giometti. "A database of unique protein sequence identifiers for proteome studies." PROTEOMICS 6, no. 16 (August 2006): 4514–22. http://dx.doi.org/10.1002/pmic.200600032.
Повний текст джерелаJin, Huan, Joshua M. Mitchell, and Hunter N. B. Moseley. "Atom Identifiers Generated by a Neighborhood-Specific Graph Coloring Method Enable Compound Harmonization across Metabolic Databases." Metabolites 10, no. 9 (September 11, 2020): 368. http://dx.doi.org/10.3390/metabo10090368.
Повний текст джерелаEgorov, Evgeny S., Ekaterina M. Merzlyak, Andrew A. Shelenkov, Olga V. Britanova, George V. Sharonov, Dmitriy B. Staroverov, Dmitriy A. Bolotin, et al. "Quantitative Profiling of Immune Repertoires for Minor Lymphocyte Counts Using Unique Molecular Identifiers." Journal of Immunology 194, no. 12 (May 8, 2015): 6155–63. http://dx.doi.org/10.4049/jimmunol.1500215.
Повний текст джерелаSmith, Tom, Andreas Heger, and Ian Sudbery. "UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy." Genome Research 27, no. 3 (January 18, 2017): 491–99. http://dx.doi.org/10.1101/gr.209601.116.
Повний текст джерелаHu, Yu, Kai Wang, and Mingyao Li. "Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers." PLOS Computational Biology 16, no. 6 (June 5, 2020): e1007925. http://dx.doi.org/10.1371/journal.pcbi.1007925.
Повний текст джерелаKarst, Søren M., Ryan M. Ziels, Rasmus H. Kirkegaard, Emil A. Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, and Mads Albertsen. "High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing." Nature Methods 18, no. 2 (January 11, 2021): 165–69. http://dx.doi.org/10.1038/s41592-020-01041-y.
Повний текст джерелаXu, Chang, Xiujing Gu, Raghavendra Padmanabhan, Zhong Wu, Quan Peng, John DiCarlo, and Yexun Wang. "smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers." Bioinformatics 35, no. 8 (September 6, 2018): 1299–309. http://dx.doi.org/10.1093/bioinformatics/bty790.
Повний текст джерелаRobinson, Jacob E., and Christine E. Cutucache. "Unique molecular identifiers of indolent versus aggressive phenotyping in non-Hodgkin lymphoma: spotlight on SMZL." Journal of Immunology 200, no. 1_Supplement (May 1, 2018): 123.6. http://dx.doi.org/10.4049/jimmunol.200.supp.123.6.
Повний текст джерелаKou, Ruqin, Ham Lam, Hairong Duan, Li Ye, Narisra Jongkam, Weizhi Chen, Shifang Zhang, and Shihong Li. "Benefits and Challenges with Applying Unique Molecular Identifiers in Next Generation Sequencing to Detect Low Frequency Mutations." PLOS ONE 11, no. 1 (January 11, 2016): e0146638. http://dx.doi.org/10.1371/journal.pone.0146638.
Повний текст джерелаAmstler, S., L. Forer, G. Streiter, S. Di Maio, B. Paulweber, F. Kronenberg, S. Schönherr, and S. Coassin. "Nanopore sequencing with unique molecular identifiers preserves SNP haplotypes of the LPA KIV-2 copy number variation." Atherosclerosis 379 (August 2023): S47. http://dx.doi.org/10.1016/j.atherosclerosis.2023.06.202.
Повний текст джерелаYesmin, Nusrat, Sabrina M. Elias, Md Sazzadur Rahman, Taslima Haque, A. K. M. Mahbub Hasan, and Zeba I. Seraj. "Unique Genotypic Differences Discovered among Indigenous Bangladeshi Rice Landraces." International Journal of Genomics 2014 (2014): 1–11. http://dx.doi.org/10.1155/2014/210328.
Повний текст джерелаMao, Ruifang, Shanshan Xiao, Rui Lin, Yuchen Wang, and Tao Wang. "Technical validation of a high-sensitivity target capture NGS assay using unique molecular identifier approach." Journal of Clinical Oncology 38, no. 15_suppl (May 20, 2020): e13657-e13657. http://dx.doi.org/10.1200/jco.2020.38.15_suppl.e13657.
Повний текст джерелаBürckert, Jean-Philippe, William J. Faison, Danielle E. Mustin, Axel R. S. X. Dubois, Regina Sinner, Oliver Hunewald, Anke Wienecke-Baldacchino, Anne Brieger, and Claude P. Muller. "High-throughput sequencing of murine immunoglobulin heavy chain repertoires using single side unique molecular identifiers on an Ion Torrent PGM." Oncotarget 9, no. 54 (July 13, 2018): 30225–39. http://dx.doi.org/10.18632/oncotarget.25493.
Повний текст джерелаGligoric, Nenad, Srdjan Krco, Liisa Hakola, Kaisa Vehmas, Suparna De, Klaus Moessner, Kristoffer Jansson, Ingmar Polenz, and Rob van Kranenburg. "SmartTags: IoT Product Passport for Circular Economy Based on Printed Sensors and Unique Item-Level Identifiers." Sensors 19, no. 3 (January 30, 2019): 586. http://dx.doi.org/10.3390/s19030586.
Повний текст джерелаYang, Yang, Di Zheng, Chunyan Wu, Analyn Lizaso, Junyi Ye, Shannon Chuai, Jian Ni, Jianfang Xu, and Gening Jiang. "Detecting Ultralow Frequency Mutation in Circulating Cell‐Free DNA of Early‐Stage Nonsmall Cell Lung Cancer Patients with Unique Molecular Identifiers." Small Methods 3, no. 10 (April 26, 2019): 1900206. http://dx.doi.org/10.1002/smtd.201900206.
Повний текст джерелаAdenipekun, C. O., L. A. Ogunkanmi, and O. Onibonoje. "Morphological and molecular assessment of mushroom (Lentinus Squarrosulus) (mont.) Singer." Ife Journal of Science 23, no. 2 (November 17, 2021): 43–52. http://dx.doi.org/10.4314/ijs.v23i2.5.
Повний текст джерелаChoi, Ashley, Samuel Meier, Silvia Fenoglio, Tianshu Feng, Justin Engel, Binzhang Shen, Shangtao Liu, et al. "Abstract 1224: UMIBB: A novel nonparametric Bayesian method improves robustness and sensitivity of analysis in pooled CRISPR-Cas9 screens leveraging unique molecular identifiers." Cancer Research 82, no. 12_Supplement (June 15, 2022): 1224. http://dx.doi.org/10.1158/1538-7445.am2022-1224.
Повний текст джерелаBaer, Constance Regina, Niroshan Nadarajah, Claudia Haferlach, Wolfgang Kern, and Torsten Haferlach. "The Use of Unique Molecular Identifiers (UMIs) Strongly Improves Sequencing Detection Limits Allowing Earlier Detection of Small TP53 Mutated Clones in Leukemias." Blood 128, no. 22 (December 2, 2016): 2027. http://dx.doi.org/10.1182/blood.v128.22.2027.2027.
Повний текст джерелаXie, Hongyu, Yaxi Zhang, Pei Zhihua, Jianing Yu, Yiqian Liu, Shiqi Zheng, Geng Chen, Weizhi Chen, and Ji He. "A unique molecular identifier-based and clonal hematopoiesis-aware approach for accurate mutation calling in cell-free DNA assays." Journal of Clinical Oncology 39, no. 15_suppl (May 20, 2021): e22515-e22515. http://dx.doi.org/10.1200/jco.2021.39.15_suppl.e22515.
Повний текст джерелаKoelling, Nils, Marie Bernkopf, Eduardo Calpena, Geoffrey J. Maher, Kerry A. Miller, Hannah K. Ralph, Anne Goriely, and Andrew O. M. Wilkie. "amplimap: a versatile tool to process and analyze targeted NGS data." Bioinformatics 35, no. 24 (July 26, 2019): 5349–50. http://dx.doi.org/10.1093/bioinformatics/btz582.
Повний текст джерелаHauck, Nastasja, Josiane Kirpach, Christina Kiefer, Sophie Farinelle, Sophie Maucourant, Stephen Morris, William Rosenberg, Feng He, Claude Muller, and I.-Na Lu. "Applying Unique Molecular Identifiers in Next Generation Sequencing Reveals a Constrained Viral Quasispecies Evolution under Cross-Reactive Antibody Pressure Targeting Long Alpha Helix of Hemagglutinin." Viruses 10, no. 4 (March 25, 2018): 148. http://dx.doi.org/10.3390/v10040148.
Повний текст джерелаZhou, Shuntai, and Ronald Swanstrom. "Fact and Fiction about 1%: Next Generation Sequencing and the Detection of Minor Drug Resistant Variants in HIV-1 Populations with and without Unique Molecular Identifiers." Viruses 12, no. 8 (August 4, 2020): 850. http://dx.doi.org/10.3390/v12080850.
Повний текст джерелаGu, Xiaolin, Wenjia Wu, Xiaodan Gu, Zhen Ling, Ming Yang, and Aibo Song. "Probe Request Based Device Identification Attack and Defense." Sensors 20, no. 16 (August 17, 2020): 4620. http://dx.doi.org/10.3390/s20164620.
Повний текст джерелаYU, GONG-XIN. "RULEMINER: A KNOWLEDGE SYSTEM FOR SUPPORTING HIGH-THROUGHPUT PROTEIN FUNCTION ANNOTATIONS." Journal of Bioinformatics and Computational Biology 02, no. 04 (December 2004): 595–617. http://dx.doi.org/10.1142/s0219720004000752.
Повний текст джерелаYang, Xiao, Yasushi Saito, Arjun Rao, Hyunsung John Kim, Pranav Singh, Eric Scott, Matthew Larson, Wenying Pan, Mohini Desai, and Earl Hubbell. "Alignment-free filtering for cfNA fusion fragments." Bioinformatics 35, no. 14 (July 2019): i225—i232. http://dx.doi.org/10.1093/bioinformatics/btz346.
Повний текст джерелаKlepikova, Anna V., Artem S. Kasianov, Mikhail S. Chesnokov, Natalia L. Lazarevich, Aleksey A. Penin, and Maria Logacheva. "Effect of method of deduplication on estimation of differential gene expression using RNA-seq." PeerJ 5 (March 16, 2017): e3091. http://dx.doi.org/10.7717/peerj.3091.
Повний текст джерелаYadav, Divya, Balwant Raj, and Balwinder Raj. "Design and Simulation of Low Power Microcontroller for Internet of Things Applications." Sensor Letters 18, no. 5 (May 1, 2020): 401–9. http://dx.doi.org/10.1166/sl.2020.4241.
Повний текст джерелаPrünte, Philipp, Daniel Schoepflin, and Thorsten Schüppstuhl. "A Comparative Study of Visual Identification Methods for Highly Similar Engine Tubes in Aircraft Maintenance, Repair and Overhaul." Sensors 23, no. 15 (July 28, 2023): 6779. http://dx.doi.org/10.3390/s23156779.
Повний текст джерелаImoto, Yusuke, Tomonori Nakamura, Emerson G. Escolar, Michio Yoshiwaki, Yoji Kojima, Yukihiro Yabuta, Yoshitaka Katou, Takuya Yamamoto, Yasuaki Hiraoka, and Mitinori Saitou. "Resolution of the curse of dimensionality in single-cell RNA sequencing data analysis." Life Science Alliance 5, no. 12 (August 9, 2022): e202201591. http://dx.doi.org/10.26508/lsa.202201591.
Повний текст джерелаvan Brug, Heather E., Frits R. Rosendaal, Liza N. van Steenbergen, Rob G. H. H. Nelissen, and Maaike G. J. Gademan. "Data linkage of two national databases: Lessons learned from linking the Dutch Arthroplasty Register with the Dutch Foundation for Pharmaceutical Statistics." PLOS ONE 18, no. 3 (March 8, 2023): e0282519. http://dx.doi.org/10.1371/journal.pone.0282519.
Повний текст джерелаAli, Dema, Dana Alhattab, Hanan Jafar, Malak Alzubide, Nour Sharar, Salwa Bdour, and Abdalla Awidi. "Differential Marker Expression between Keratinocyte Stem Cells and Their Progeny Generated from a Single Colony." International Journal of Molecular Sciences 22, no. 19 (October 6, 2021): 10810. http://dx.doi.org/10.3390/ijms221910810.
Повний текст джерелаSong, Chen, Ariel Erijman, Bradley W. Langhorst, Pingfang Liu, Eileen T. Dimalanta, and Theodore B. Davis. "Abstract 5628: Immune repertoire sequencing facilitates gamma delta T cell clonal determination." Cancer Research 82, no. 12_Supplement (June 15, 2022): 5628. http://dx.doi.org/10.1158/1538-7445.am2022-5628.
Повний текст джерелаWilkins, Oscar G., Charlotte Capitanchik, Nicholas M. Luscombe, and Jernej Ule. "Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer." Wellcome Open Research 6 (June 7, 2021): 141. http://dx.doi.org/10.12688/wellcomeopenres.16791.1.
Повний текст джерелаCasparie, M., A. T. M. G. Tiebosch, G. Burger, H. Blauwgeers, A. van de Pol, J. H. J. M. van Krieken, and G. A. Meijer. "Pathology Databanking and Biobanking in The Netherlands, a Central Role for PALGA, the Nationwide Histopathology and Cytopathology Data Network and Archive." Analytical Cellular Pathology 29, no. 1 (January 1, 2007): 19–24. http://dx.doi.org/10.1155/2007/971816.
Повний текст джерелаKivioja, Teemu, Anna Vähärautio, Kasper Karlsson, Martin Bonke, Sten Linnarsson, and Jussi Taipale. "Counting absolute number of molecules using unique molecular identifiers." Nature Precedings, April 14, 2011. http://dx.doi.org/10.1038/npre.2011.5903.1.
Повний текст джерелаSaunders, Klay, Andrew G. Bert, B. Kate Dredge, John Toubia, Philip A. Gregory, Katherine A. Pillman, Gregory J. Goodall, and Cameron P. Bracken. "Insufficiently complex unique-molecular identifiers (UMIs) distort small RNA sequencing." Scientific Reports 10, no. 1 (September 3, 2020). http://dx.doi.org/10.1038/s41598-020-71323-0.
Повний текст джерелаZhu, Tao, Keyan Liao, Rongfang Zhou, Chunjiao Xia, and Weibo Xie. "ATAC-seq with unique molecular identifiers improves quantification and footprinting." Communications Biology 3, no. 1 (November 13, 2020). http://dx.doi.org/10.1038/s42003-020-01403-4.
Повний текст джерелаPhilpott, Martin, Jonathan Watson, Anjan Thakurta, Tom Brown, Tom Brown, Udo Oppermann, and Adam P. Cribbs. "Nanopore sequencing of single-cell transcriptomes with scCOLOR-seq." Nature Biotechnology, July 1, 2021. http://dx.doi.org/10.1038/s41587-021-00965-w.
Повний текст джерелаCrysup, Benjamin, Sammed Mandape, Jonathan L. King, Melissa Muenzler, Kapema Bupe Kapema, and August E. Woerner. "Using Unique Molecular Identifiers to Improve Allele Calling in Low-Template Mixtures." Forensic Science International: Genetics, November 2022, 102807. http://dx.doi.org/10.1016/j.fsigen.2022.102807.
Повний текст джерелаGirardot, Charles, Jelle Scholtalbers, Sajoscha Sauer, Shu-Yi Su, and Eileen E. M. Furlong. "Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers." BMC Bioinformatics 17, no. 1 (October 8, 2016). http://dx.doi.org/10.1186/s12859-016-1284-2.
Повний текст джерелаFields, Bryden, Sara Moeskjær, Ville‐Petri Friman, Stig U. Andersen, and J. Peter W. Young. "MAUI‐seq: Metabarcoding using amplicons with unique molecular identifiers to improve error correction." Molecular Ecology Resources, November 29, 2020. http://dx.doi.org/10.1111/1755-0998.13294.
Повний текст джерелаWoerner, August E., Sammed Mandape, Jonathan L. King, Melissa Muenzler, Benjamin Crysup, and Bruce Budowle. "Reducing noise and stutter in short tandem repeat loci with unique molecular identifiers." Forensic Science International: Genetics, December 2020, 102459. http://dx.doi.org/10.1016/j.fsigen.2020.102459.
Повний текст джерелаTownes, F. William, and Rafael A. Irizarry. "Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers." Genome Biology 21, no. 1 (July 3, 2020). http://dx.doi.org/10.1186/s13059-020-02078-0.
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