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Статті в журналах з теми "Substitution rate evolution"
Woolfit, Megan. "Effective population size and the rate and pattern of nucleotide substitutions." Biology Letters 5, no. 3 (April 8, 2009): 417–20. http://dx.doi.org/10.1098/rsbl.2009.0155.
Повний текст джерелаStreck, André Felipe, Sandro Luis Bonatto, Timo Homeier, Carine Kunzler Souza, Karla Rathje Gonçalves, Danielle Gava, Cláudio Wageck Canal, and Uwe Truyen. "High rate of viral evolution in the capsid protein of porcine parvovirus." Journal of General Virology 92, no. 11 (November 1, 2011): 2628–36. http://dx.doi.org/10.1099/vir.0.033662-0.
Повний текст джерелаTillier, Elisabeth R. M., and Richard A. Collins. "High Apparent Rate of Simultaneous Compensatory Base-Pair Substitutions in Ribosomal RNA." Genetics 148, no. 4 (April 1, 1998): 1993–2002. http://dx.doi.org/10.1093/genetics/148.4.1993.
Повний текст джерелаTakano, Toshiyuki S. "Rate Variation of DNA Sequence Evolution in the Drosophila Lineages." Genetics 149, no. 2 (June 1, 1998): 959–70. http://dx.doi.org/10.1093/genetics/149.2.959.
Повний текст джерелаStephan, Wolfgang. "The Rate of Compensatory Evolution." Genetics 144, no. 1 (September 1, 1996): 419–26. http://dx.doi.org/10.1093/genetics/144.1.419.
Повний текст джерелаBielawski, Joseph P., Katherine A. Dunn, and Ziheng Yang. "Rates of Nucleotide Substitution and Mammalian Nuclear Gene Evolution: Approximate and Maximum-Likelihood Methods Lead to Different Conclusions." Genetics 156, no. 3 (November 1, 2000): 1299–308. http://dx.doi.org/10.1093/genetics/156.3.1299.
Повний текст джерелаZhang, Jianzhi, and Xun Gu. "Correlation Between the Substitution Rate and Rate Variation Among Sites in Protein Evolution." Genetics 149, no. 3 (July 1, 1998): 1615–25. http://dx.doi.org/10.1093/genetics/149.3.1615.
Повний текст джерелаDuffy, Siobain, and Edward C. Holmes. "Phylogenetic Evidence for Rapid Rates of Molecular Evolution in the Single-Stranded DNA Begomovirus Tomato Yellow Leaf Curl Virus." Journal of Virology 82, no. 2 (October 31, 2007): 957–65. http://dx.doi.org/10.1128/jvi.01929-07.
Повний текст джерелаGrigoras, Ioana, Tatiana Timchenko, Ana Grande-Pérez, Lina Katul, Heinrich-Josef Vetten, and Bruno Gronenborn. "High Variability and Rapid Evolution of a Nanovirus." Journal of Virology 84, no. 18 (June 30, 2010): 9105–17. http://dx.doi.org/10.1128/jvi.00607-10.
Повний текст джерелаMugal, C. F., J. B. W. Wolf, H. H. von Grünberg, and H. Ellegren. "Conservation of Neutral Substitution Rate and Substitutional Asymmetries in Mammalian Genes." Genome Biology and Evolution 2 (January 1, 2010): 19–28. http://dx.doi.org/10.1093/gbe/evp056.
Повний текст джерелаДисертації з теми "Substitution rate evolution"
Botha, Stephen Gordon. "The effect of evolutionary rate estimation methods on correlations observed between substitution rates in models of evolution." Thesis, Stellenbosch : Stellenbosch University, 2012. http://hdl.handle.net/10019.1/19938.
Повний текст джерелаMugal, Carina Farah. "Nucleotide Substitution Patterns in Vertebrate Genomes." Doctoral thesis, Uppsala universitet, Evolutionsbiologi, 2013. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-198787.
Повний текст джерелаRaj, Kumar Praveen Kumar. "APPLICATION OF TRANSCRIPTOMICS TO ADDRESS QUESTIONS IN MOLECULAR BIOLOGY AND EVOLUTION." Miami University / OhioLINK, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=miami1410427259.
Повний текст джерелаHermansen, Russell A., Brian K. Mannakee, Wolfgang Knecht, David A. Liberles, and Ryan N. Gutenkunst. "Characterizing selective pressures on the pathway for de novo biosynthesis of pyrimidines in yeast." BioMed Central Ltd, 2015. http://hdl.handle.net/10150/610280.
Повний текст джерелаBerlin, Sofia. "The Effects of Mutation and Selection on the Rate and Pattern of Molecular Evolution in Birds." Doctoral thesis, Uppsala : Acta Universitatis Upsaliensis : Univ.-bibl. [distributör], 2004. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-4516.
Повний текст джерелаJung, Matthieu. "Evolution du VIH : méthodes, modèles et algorithmes." Thesis, Montpellier 2, 2012. http://www.theses.fr/2012MON20052/document.
Повний текст джерелаNucleotide sequences data enable the inference of phylogenetic trees, or phylogenies, describing their evolutionary re-lationships during evolution. Combining these sequences with their sampling date or country of origin, allows inferring the temporal or spatial localization of their common ancestors. These data and methods are widely used with viral sequences, and particularly with human immunodeficiency virus (HIV), to trace the viral epidemic history over time and throughout the globe. Using sequences sampled at different points in time (or heterochronous) is also a mean to estimate their substitution rate, which characterizes the speed of evolution. The most commonly used methods to achieve these tasks are accurate, but are computationally heavy since they are based on complex models, and can only handle few hundreds of sequences. With an increasing number of sequences avail-able in the databases, often several thousand for a given study, the development of fast and accurate methods becomes essential. Here, we present a new distance-based method, named Ultrametric Least Squares, which is based on the princi-ple of least squares (very popular in phylogenetics) to estimate the substitution rate of a set of heterochronous sequences and the dates of their most recent common ancestors. We demonstrate that the criterion to be optimized is piecewise parabolic, and provide an efficient algorithm to find the global minimum.Using sequences sampled at different locations also helps to trace transmission chains of an epidemic. In this respect, we used all available sequences (~3,500) of HIV-1 subtype C, responsible for nearly 50% of global HIV-1 infections, to estimate its major migratory flows on a worldwide scale and its geographic origin. Innovative tools, based on the principle of parsimony, combined with several statistical criteria were used to synthesize and interpret information in a large phylogeny representing all the studied sequences. Finally, the temporal and geographical origins of the HIV-1 subtype C in Senegal were further explored and more specifically for men who have sex with men
Axelsson, Erik. "Comparative Genomics in Birds." Doctoral thesis, Uppsala : Acta Universitatis Upsaliensis, 2007. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-7432.
Повний текст джерелаSaclier, Nathanaëlle. "Origine des variations de taux d’évolution moléculaire inter-spécifiques : apport d’un modèle génomique en milieu souterrain." Thesis, Lyon, 2019. https://n2t.net/ark:/47881/m69p310z.
Повний текст джерелаThe rate at which DNA accumulates substitutions varies widely among species. Rate variations have been imputed to species intrinsic features (metabolic rate, life history traits) or to the environment characteristics (ionizing radiations, selection pressure). The aim of this PhD project was to investigate the main hypotheses explaining variations in the rate of molecular evolution between species. To achieve that, we combined the unique properties of subterranean isopods from the Asellidae family and high-throughput sequencing data from the nuclear and mitochondrial genome. Asellidae species have made multiple independent transitions to subterranean environments where subterranean species have repeatedly evolved a lower metabolic rate, a longer lifespan and a longer generation time. Moreover, because they are poor dispersers, they are exposed to the same environment across many generations, allowing us to compare species with long-term contrasted features in term of life history traits and environmental characteristics. We found that generation time negatively impact the rate of molecular evolution in the nuclear genome whereas the mitochondrial rate remained unchanged. We also found an increase of the mutation rate for species living in naturally highly radioactive environments. Finally, the study of the rate of molecular evolution variation at a global scale brought forward a systematic bias which needs to be taken into account in studying the link between the mutation rate and diversification
Erixon, Per. "Phylogenetic Support and Chloroplast Genome Evolution in Sileneae (Caryophyllaceae)." Doctoral thesis, Uppsala : Acta Universitatis Upsaliensis : Universitetsbiblioteket [distributör], 2006. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-7166.
Повний текст джерелаKünstner, Axel. "Birds as a Model for Comparative Genomic Studies." Doctoral thesis, Uppsala universitet, Evolutionsbiologi, 2011. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-159766.
Повний текст джерелаКниги з теми "Substitution rate evolution"
Renner, Tanya, Tianying Lan, Kimberly M. Farr, Enrique Ibarra-Laclette, Luis Herrera-Estrella, Stephan C. Schuster, Mitsuyasu Hasebe, Kenji Fukushima, and Victor A. Albert. Carnivorous plant genomes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198779841.003.0011.
Повний текст джерелаPamuk, Sevket. Uneven Centuries. Princeton University Press, 2018. http://dx.doi.org/10.23943/princeton/9780691166377.001.0001.
Повний текст джерелаЧастини книг з теми "Substitution rate evolution"
Hu, Ting, and Wolfgang Banzhaf. "Nonsynonymous to Synonymous Substitution Ratio $k_{\mathrm a}/k_{\mathrm s}$ : Measurement for Rate of Evolution in Evolutionary Computation." In Parallel Problem Solving from Nature – PPSN X, 448–57. Berlin, Heidelberg: Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/978-3-540-87700-4_45.
Повний текст джерелаMuse, Spencer V. "Examining rates and patterns of nucleotide substitution in plants." In Plant Molecular Evolution, 25–43. Dordrecht: Springer Netherlands, 2000. http://dx.doi.org/10.1007/978-94-011-4221-2_2.
Повний текст джерелаТези доповідей конференцій з теми "Substitution rate evolution"
Hu, Ting, and Wolfgang Banzhaf. "Measuring rate of evolution in genetic programming using amino acid to synonymous substitution ratioka/ks." In the 10th annual conference. New York, New York, USA: ACM Press, 2008. http://dx.doi.org/10.1145/1389095.1389352.
Повний текст джерелаAniello, Andrea, Lorenzo Bartolucci, Stefano Cordiner, Vincenzo Mulone, Sundar R. Krishnan, and Kalyan K. Srinivasan. "CFD Analysis of Diesel-Methane Dual Fuel Low Temperature Combustion at Low Load and High Methane Substitution." In ASME 2018 Internal Combustion Engine Division Fall Technical Conference. American Society of Mechanical Engineers, 2018. http://dx.doi.org/10.1115/icef2018-9649.
Повний текст джерела