Статті в журналах з теми "Structural Classification of Proteins (SCOP)"
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Barton, Geoffrey J. "scop: structural classification of proteins." Trends in Biochemical Sciences 19, no. 12 (December 1994): 554–55. http://dx.doi.org/10.1016/0968-0004(94)90060-4.
Повний текст джерелаHubbard, T. J. P., B. Ailey, S. E. Brenner, A. G. Murzin, and C. Chothia. "SCOP: a Structural Classification of Proteins database." Nucleic Acids Research 27, no. 1 (January 1, 1999): 254–56. http://dx.doi.org/10.1093/nar/27.1.254.
Повний текст джерелаLo Conte, L. "SCOP: a Structural Classification of Proteins database." Nucleic Acids Research 28, no. 1 (January 1, 2000): 257–59. http://dx.doi.org/10.1093/nar/28.1.257.
Повний текст джерелаHubbard, T. J. P., A. G. Murzin, S. E. Brenner, and C. Chothia. "SCOP: a Structural Classification of Proteins database." Nucleic Acids Research 25, no. 1 (January 1, 1997): 236–39. http://dx.doi.org/10.1093/nar/25.1.236.
Повний текст джерелаANGADI, ULAVAPPA B., and M. VENKATESULU. "FUZZYART NEURAL NETWORK FOR PROTEIN CLASSIFICATION." Journal of Bioinformatics and Computational Biology 08, no. 05 (October 2010): 825–41. http://dx.doi.org/10.1142/s0219720010004951.
Повний текст джерелаFox, Naomi K., Steven E. Brenner, and John-Marc Chandonia. "SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures." Nucleic Acids Research 42, no. D1 (December 3, 2013): D304—D309. http://dx.doi.org/10.1093/nar/gkt1240.
Повний текст джерелаAndreeva, Antonina, Eugene Kulesha, Julian Gough, and Alexey G. Murzin. "The SCOP database in 2020: expanded classification of representative family and superfamily domains of known protein structures." Nucleic Acids Research 48, no. D1 (November 14, 2019): D376—D382. http://dx.doi.org/10.1093/nar/gkz1064.
Повний текст джерелаAndreeva, Antonina. "Lessons from making the Structural Classification of Proteins (SCOP) and their implications for protein structure modelling." Biochemical Society Transactions 44, no. 3 (June 9, 2016): 937–43. http://dx.doi.org/10.1042/bst20160053.
Повний текст джерелаHubbard, Tim J. P., Bart Ailey, Steven E. Brenner, Alexey G. Murzin, and Cyrus Chothia. "SCOP, Structural Classification of Proteins Database: Applications to Evaluation of the Effectiveness of Sequence Alignment Methods and Statistics of Protein Structural Data." Acta Crystallographica Section D Biological Crystallography 54, no. 6 (November 1, 1998): 1147–54. http://dx.doi.org/10.1107/s0907444998009172.
Повний текст джерелаNewaz, Khalique, Mahboobeh Ghalehnovi, Arash Rahnama, Panos J. Antsaklis, and Tijana Milenković. "Network-based protein structural classification." Royal Society Open Science 7, no. 6 (June 2020): 191461. http://dx.doi.org/10.1098/rsos.191461.
Повний текст джерелаCASAGRANDE, ALBERTO, and FRANCESCO FABRIS. "FAMILY FINGERPRINTS: A GLOBAL APPROACH TO STRUCTURAL CLASSIFICATION." Journal of Bioinformatics and Computational Biology 10, no. 03 (June 2012): 1242001. http://dx.doi.org/10.1142/s0219720012420012.
Повний текст джерелаMurzin, Alexey G., Steven E. Brenner, Tim Hubbard, and Cyrus Chothia. "SCOP: A structural classification of proteins database for the investigation of sequences and structures." Journal of Molecular Biology 247, no. 4 (April 1995): 536–40. http://dx.doi.org/10.1016/s0022-2836(05)80134-2.
Повний текст джерелаRudnev, Vladimir R., Denis V. Petrovsky, Kirill S. Nikolsky, Liudmila I. Kulikova, Alexander A. Stepanov, Kristina A. Malsagova, Anna L. Kaysheva та Alexander V. Efimov. "Biological Role of the 3β-Corner Structural Motif in Proteins". Processes 10, № 11 (22 жовтня 2022): 2159. http://dx.doi.org/10.3390/pr10112159.
Повний текст джерелаPitulice, Laura, Adriana Isvoran, and Adrian Chiriac. "Structural features of proteins as reflected by statistical scaling laws." Journal of the Serbian Chemical Society 73, no. 8-9 (2008): 805–13. http://dx.doi.org/10.2298/jsc0809805p.
Повний текст джерелаGerstein, Mark, and Michael Levitt. "Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins." Protein Science 7, no. 2 (February 1998): 445–56. http://dx.doi.org/10.1002/pro.5560070226.
Повний текст джерелаPlewczynski, Dariusz, Jakub Pas, Marcin Von Grotthuss, and Leszek Rychlewski. "Comparison of proteins based on segments structural similarity." Acta Biochimica Polonica 51, no. 1 (March 31, 2004): 161–72. http://dx.doi.org/10.18388/abp.2004_3608.
Повний текст джерелаLampros, Christos, Thomas Simos, Themis P. Exarchos, Konstantinos P. Exarchos, Costas Papaloukas, and Dimitrios I. Fotiadis. "Assessment of optimized Markov models in protein fold classification." Journal of Bioinformatics and Computational Biology 12, no. 04 (August 2014): 1450016. http://dx.doi.org/10.1142/s0219720014500164.
Повний текст джерелаCasbon, James, and Mansoor Saqi. "Functional diversity within protein superfamilies." Journal of Integrative Bioinformatics 3, no. 2 (December 1, 2006): 295–304. http://dx.doi.org/10.1515/jib-2006-46.
Повний текст джерелаXu, Jinrui, and Yang Zhang. "How significant is a protein structure similarity with TM-score = 0.5?" Bioinformatics 26, no. 7 (February 17, 2010): 889–95. http://dx.doi.org/10.1093/bioinformatics/btq066.
Повний текст джерелаChandonia, John-Marc, Naomi K. Fox, and Steven E. Brenner. "SCOPe: classification of large macromolecular structures in the structural classification of proteins—extended database." Nucleic Acids Research 47, no. D1 (November 30, 2018): D475—D481. http://dx.doi.org/10.1093/nar/gky1134.
Повний текст джерелаRother, Kristian, Mathias Dunkel, Elke Michalsky, Silke Trissl, Andrean Goede, Ulf Leser, and Robert Preissner. "A structural keystone for drug design." Journal of Integrative Bioinformatics 3, no. 1 (June 1, 2006): 21–31. http://dx.doi.org/10.1515/jib-2006-19.
Повний текст джерелаChandonia, John-Marc, Naomi K. Fox, and Steven E. Brenner. "SCOPe: Manual Curation and Artifact Removal in the Structural Classification of Proteins – extended Database." Journal of Molecular Biology 429, no. 3 (February 2017): 348–55. http://dx.doi.org/10.1016/j.jmb.2016.11.023.
Повний текст джерелаNarykov, Oleksandr, Dmytro Bogatov, and Dmitry Korkin. "DISPOT: a simple knowledge-based protein domain interaction statistical potential." Bioinformatics 35, no. 24 (July 27, 2019): 5374–78. http://dx.doi.org/10.1093/bioinformatics/btz587.
Повний текст джерелаChandonia, John-Marc, Lindsey Guan, Shiangyi Lin, Changhua Yu, Naomi K. Fox, and Steven E. Brenner. "SCOPe: improvements to the structural classification of proteins – extended database to facilitate variant interpretation and machine learning." Nucleic Acids Research 50, no. D1 (December 1, 2021): D553—D559. http://dx.doi.org/10.1093/nar/gkab1054.
Повний текст джерелаApiletti, Daniele, Giulia Bruno, Elisa Ficarra, and Elena Baralis. "Data Cleaning and Semantic Improvement in Biological Databases." Journal of Integrative Bioinformatics 3, no. 2 (December 1, 2006): 219–29. http://dx.doi.org/10.1515/jib-2006-40.
Повний текст джерелаChen, Daozheng, Xiaoyu Tian, Bo Zhou, and Jun Gao. "ProFold: Protein Fold Classification with Additional Structural Features and a Novel Ensemble Classifier." BioMed Research International 2016 (2016): 1–10. http://dx.doi.org/10.1155/2016/6802832.
Повний текст джерелаCOMIN, MATTEO, CARLO FERRARI, and CONCETTINA GUERRA. "GRID DEPLOYMENT OF BIOINFORMATICS APPLICATIONS: A CASE STUDY IN PROTEIN SIMILARITY DETERMINATION." Parallel Processing Letters 14, no. 02 (June 2004): 163–76. http://dx.doi.org/10.1142/s0129626404001817.
Повний текст джерелаRudakova, Tetyana, Antonina Minorova, Nataliia Krushelnytska, and Sergiy Narizhnyy. "Scientific approaches to classifying dairy dessert products." FOOD RESOURCES 9, no. 16 (June 25, 2021): 164–79. http://dx.doi.org/10.31073/foodresources2021-16-16.
Повний текст джерелаAngadi, Ulavappa B., and M. Venkatesulu. "Structural SCOP Superfamily Level Classification Using Unsupervised Machine Learning." IEEE/ACM Transactions on Computational Biology and Bioinformatics 9, no. 2 (March 2012): 601–8. http://dx.doi.org/10.1109/tcbb.2011.114.
Повний текст джерелаJoseph, Agnel Praveen, Hélène Valadié, Narayanaswamy Srinivasan, and Alexandre G. de Brevern. "Local Structural Differences in Homologous Proteins: Specificities in Different SCOP Classes." PLoS ONE 7, no. 6 (June 22, 2012): e38805. http://dx.doi.org/10.1371/journal.pone.0038805.
Повний текст джерелаMalhotra, Sony, and Ramanathan Sowdhamini. "Collation and analyses of DNA-binding protein domain families from sequence and structural databanks." Mol. BioSyst. 11, no. 4 (2015): 1110–18. http://dx.doi.org/10.1039/c4mb00629a.
Повний текст джерелаÇAMOĞLU, ORHAN, TOLGA CAN, AMBUJ K. SINGH, and YUAN-FANG WANG. "DECISION TREE BASED INFORMATION INTEGRATION FOR AUTOMATED PROTEIN CLASSIFICATION." Journal of Bioinformatics and Computational Biology 03, no. 03 (June 2005): 717–42. http://dx.doi.org/10.1142/s0219720005001259.
Повний текст джерелаLo, Sheng C., Zhong-Ru Xie, and Kuan Y. Chang. "Structural and Functional Enrichment Analyses for Antimicrobial Peptides." International Journal of Molecular Sciences 21, no. 22 (November 20, 2020): 8783. http://dx.doi.org/10.3390/ijms21228783.
Повний текст джерелаMurzin, Alexey G. "Structural classification of proteins: new superfamilies." Current Opinion in Structural Biology 6, no. 3 (June 1996): 386–94. http://dx.doi.org/10.1016/s0959-440x(96)80059-5.
Повний текст джерелаDubchak, Inna, Ilya Muchnik, Christopher Mayor, Igor Dralyuk, and Sung-Hou Kim. "Recognition of a protein fold in the context of the SCOP classification." Proteins: Structure, Function, and Genetics 35, no. 4 (June 1, 1999): 401–7. http://dx.doi.org/10.1002/(sici)1097-0134(19990601)35:4<401::aid-prot3>3.0.co;2-k.
Повний текст джерелаSuwa, M. "Structural recognition and classification of membrane proteins." Seibutsu Butsuri 40, supplement (2000): S106. http://dx.doi.org/10.2142/biophys.40.s106_1.
Повний текст джерелаBerntsson, Ronnie P. A., Sander H. J. Smits, Lutz Schmitt, Dirk-Jan Slotboom, and Bert Poolman. "A structural classification of substrate-binding proteins." FEBS Letters 584, no. 12 (April 20, 2010): 2606–17. http://dx.doi.org/10.1016/j.febslet.2010.04.043.
Повний текст джерелаChen, Yingfei, Armando Elizondo-Noriega, David C. Cantu, and Peter J. Reilly. "Structural classification of biotin carboxyl carrier proteins." Biotechnology Letters 34, no. 10 (June 20, 2012): 1869–75. http://dx.doi.org/10.1007/s10529-012-0978-4.
Повний текст джерелаQi, Yuan, and Nick V. Grishin. "Structural classification of thioredoxin-like fold proteins." Proteins: Structure, Function, and Bioinformatics 58, no. 2 (November 19, 2004): 376–88. http://dx.doi.org/10.1002/prot.20329.
Повний текст джерелаBonet, Jaume, Joan Planas-Iglesias, Javier Garcia-Garcia, Manuel A. Marín-López, Narcis Fernandez-Fuentes, and Baldo Oliva. "ArchDB 2014: structural classification of loops in proteins." Nucleic Acids Research 42, no. D1 (November 21, 2013): D315—D319. http://dx.doi.org/10.1093/nar/gkt1189.
Повний текст джерелаMurzin, Alexey G., and Alex Bateman. "Distant homology recognition using structural classification of proteins." Proteins: Structure, Function, and Genetics 29, S1 (1997): 105–12. http://dx.doi.org/10.1002/(sici)1097-0134(1997)1+<105::aid-prot14>3.0.co;2-s.
Повний текст джерелаScheepers, Giel H., Jelger A. Lycklama a Nijeholt, and Bert Poolman. "An updated structural classification of substrate-binding proteins." FEBS Letters 590, no. 23 (October 23, 2016): 4393–401. http://dx.doi.org/10.1002/1873-3468.12445.
Повний текст джерелаChen, Chang, Haipeng Liu, Shadi Zabad, Nina Rivera, Emily Rowin, Maheen Hassan, Stephanie M. Gomez De Jesus, et al. "MoonProt 3.0: an update of the moonlighting proteins database." Nucleic Acids Research 49, no. D1 (November 27, 2020): D368—D372. http://dx.doi.org/10.1093/nar/gkaa1101.
Повний текст джерелаRubinstein, Rotem, Udupi A. Ramagopal, Stanley G. Nathenson, Steven C. Almo, and Andras Fiser. "Functional Classification of Immune Regulatory Proteins." Structure 21, no. 5 (May 2013): 766–76. http://dx.doi.org/10.1016/j.str.2013.02.022.
Повний текст джерелаMalik, Ashar J., Anthony M. Poole, and Jane R. Allison. "Structural Phylogenetics with Confidence." Molecular Biology and Evolution 37, no. 9 (April 17, 2020): 2711–26. http://dx.doi.org/10.1093/molbev/msaa100.
Повний текст джерелаMin, Seungsik, and Kyungsik Kim. "Topological properties of networks in structural classification of proteins." Journal of the Korean Physical Society 65, no. 7 (October 2014): 1164–69. http://dx.doi.org/10.3938/jkps.65.1164.
Повний текст джерелаKinjo, Akira R., and Haruki Nakamura. "Comprehensive Structural Classification of Ligand-Binding Motifs in Proteins." Structure 17, no. 2 (February 2009): 234–46. http://dx.doi.org/10.1016/j.str.2008.11.009.
Повний текст джерелаPAI, TUN-WEN, RUEI-HSIANG CHANG, CHIEN-MING CHEN, PO-HAN SU, LEE-JYI WANG, KUEN-TSAIR LAY, and KUO-TORNG LAN. "MULTIPLE STRUCTURE ALIGNMENT BASED ON GEOMETRICAL CORRELATION OF SECONDARY STRUCTURE ELEMENTS." New Mathematics and Natural Computation 06, no. 01 (March 2010): 77–95. http://dx.doi.org/10.1142/s1793005710001621.
Повний текст джерелаCHEN, YUEHUI, FENG CHEN, JACK Y. YANG, and MARY QU YANG. "ENSEMBLE VOTING SYSTEM FOR MULTICLASS PROTEIN FOLD RECOGNITION." International Journal of Pattern Recognition and Artificial Intelligence 22, no. 04 (June 2008): 747–63. http://dx.doi.org/10.1142/s0218001408006454.
Повний текст джерелаDo, Hackwon, Chang Woo Lee, and Jun Hyuck Lee. "Structure-based classification of ice-binding proteins." Acta Crystallographica Section A Foundations and Advances 70, a1 (August 5, 2014): C1054. http://dx.doi.org/10.1107/s2053273314089451.
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