Статті в журналах з теми "Spatial transcriptomic"
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Li, Youcheng, Leann Lac, Qian Liu, and Pingzhao Hu. "ST-CellSeg: Cell segmentation for imaging-based spatial transcriptomics using multi-scale manifold learning." PLOS Computational Biology 20, no. 6 (June 27, 2024): e1012254. http://dx.doi.org/10.1371/journal.pcbi.1012254.
Повний текст джерелаChen, Tsai-Ying, Li You, Jose Angelito U. Hardillo, and Miao-Ping Chien. "Spatial Transcriptomic Technologies." Cells 12, no. 16 (August 10, 2023): 2042. http://dx.doi.org/10.3390/cells12162042.
Повний текст джерелаLv, Zhuo, Shuaijun Jiang, Shuxin Kong, Xu Zhang, Jiahui Yue, Wanqi Zhao, Long Li, and Shuyan Lin. "Advances in Single-Cell Transcriptome Sequencing and Spatial Transcriptome Sequencing in Plants." Plants 13, no. 12 (June 18, 2024): 1679. http://dx.doi.org/10.3390/plants13121679.
Повний текст джерелаGorbunova, Vera. "COMPARATIVE TRANSCRIPTOMIC OF LONGEVITY." Innovation in Aging 7, Supplement_1 (December 1, 2023): 432. http://dx.doi.org/10.1093/geroni/igad104.1423.
Повний текст джерелаCallaway, Edward M., Hong-Wei Dong, Joseph R. Ecker, Michael J. Hawrylycz, Z. Josh Huang, Ed S. Lein, John Ngai, et al. "A multimodal cell census and atlas of the mammalian primary motor cortex." Nature 598, no. 7879 (October 6, 2021): 86–102. http://dx.doi.org/10.1038/s41586-021-03950-0.
Повний текст джерелаAdabbo, Bruno, Simona Migliozzi, Luciano Garofano, Young Taek Oh, Sakir H. Gultekin, Fulvio D'Angelo, Evan R. Roberts, et al. "EPCO-27. RECONSTRUCTION OF THE SPATIAL ECOSYSTEM OF GLIOBLASTOMA REVEALS RECURRENT RELATIONSHIPS BETWEEN TUMOR CELL STATES AND TUMOR MICROENVIRONMENT." Neuro-Oncology 25, Supplement_5 (November 1, 2023): v129. http://dx.doi.org/10.1093/neuonc/noad179.0490.
Повний текст джерелаHe, Jiang, Bin Wang, Justin He, Renchao Chen, Benjamin Patterson, Sudhir Tattikota, Timothy Wiggin, et al. "Abstract LB333: Improved spatially resolved single-cell transcriptomic imaging in archival tissues with MERSCOPE." Cancer Research 84, no. 7_Supplement (April 5, 2024): LB333. http://dx.doi.org/10.1158/1538-7445.am2024-lb333.
Повний текст джерелаJiang, Peng. "Abstract IA002: Inference of intercellular signaling activities in tumor spatial and single-cell transcriptomics, with applications in identifying cancer immunotherapy targets." Molecular Cancer Therapeutics 22, no. 12_Supplement (December 1, 2023): IA002. http://dx.doi.org/10.1158/1535-7163.targ-23-ia002.
Повний текст джерелаAli, Abdullah Mahmood, and Azra Raza. "scRNAseq and High-Throughput Spatial Analysis of Tumor and Normal Microenvironment in Solid Tumors Reveal a Possible Origin of Circulating Tumor Hybrid Cells." Cancers 16, no. 7 (April 8, 2024): 1444. http://dx.doi.org/10.3390/cancers16071444.
Повний текст джерелаHe, Jiang, Justin He, Timothy Wiggin, Rob Foreman, Renchao Chen, Nicolas Fernandez, and George Emanuel. "Abstract 4195: Spatially resolved single cell transcriptomic profiling in formalin-fixed paraffin-embedded (FFPE) tissues." Cancer Research 83, no. 7_Supplement (April 4, 2023): 4195. http://dx.doi.org/10.1158/1538-7445.am2023-4195.
Повний текст джерелаShengquan, Chen, Zhang Boheng, Chen Xiaoyang, Zhang Xuegong, and Jiang Rui. "stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics." Bioinformatics 37, Supplement_1 (July 1, 2021): i299—i307. http://dx.doi.org/10.1093/bioinformatics/btab298.
Повний текст джерелаLee, Youjin, Derek Bogdanoff, Yutong Wang, George C. Hartoularos, Jonathan M. Woo, Cody T. Mowery, Hunter M. Nisonoff, et al. "XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment." Science Advances 7, no. 17 (April 2021): eabg4755. http://dx.doi.org/10.1126/sciadv.abg4755.
Повний текст джерелаGupta, Anushka, Stephen Williams, Lauren Gutgasell, Benton Veire, Ace Santiago, Hardeep Singh, Rena Chan, et al. "Spatially resolved whole-transcriptome analysis with simultaneous highly multiplexed immune cell epitope detection in multiple cancer tissues." Journal of Immunology 210, no. 1_Supplement (May 1, 2023): 251.04. http://dx.doi.org/10.4049/jimmunol.210.supp.251.04.
Повний текст джерелаYin, Yifeng, Jerald Sapida, David Sukovich, David Patterson, and Augusto Tentori. "Abstract 3645: Unraveling spatial complexity of the tumor microenvironment: A whole transcriptomic perspective with Visium HD." Cancer Research 84, no. 6_Supplement (March 22, 2024): 3645. http://dx.doi.org/10.1158/1538-7445.am2024-3645.
Повний текст джерелаDuan, Hao, Qingchen Zhang, Feifei Cui, Quan Zou, and Zilong Zhang. "MVST: Identifying spatial domains of spatial transcriptomes from multiple views using multi-view graph convolutional networks." PLOS Computational Biology 20, no. 9 (September 5, 2024): e1012409. http://dx.doi.org/10.1371/journal.pcbi.1012409.
Повний текст джерелаBae, Sungwoo, Hongyoon Choi, and Dong Soo Lee. "Discovery of molecular features underlying the morphological landscape by integrating spatial transcriptomic data with deep features of tissue images." Nucleic Acids Research 49, no. 10 (February 22, 2021): e55-e55. http://dx.doi.org/10.1093/nar/gkab095.
Повний текст джерелаLein, Ed, Lars E. Borm, and Sten Linnarsson. "The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing." Science 358, no. 6359 (October 5, 2017): 64–69. http://dx.doi.org/10.1126/science.aan6827.
Повний текст джерелаNoronha, Katelyn J., Jennifer M. Garbarino, Daniel Massucci, Abigail R. Tyree, and Colin Ng. "Abstract 4407: Simultaneous spatial epigenomic and transcriptomic analysis of gastric adenocarcinoma reveals regulatory patterns governing tumor and microenvironment architecture at the cellular level." Cancer Research 84, no. 6_Supplement (March 22, 2024): 4407. http://dx.doi.org/10.1158/1538-7445.am2024-4407.
Повний текст джерелаJiang, Rui, Zhen Li, Yuhang Jia, Siyu Li, and Shengquan Chen. "SINFONIA: Scalable Identification of Spatially Variable Genes for Deciphering Spatial Domains." Cells 12, no. 4 (February 13, 2023): 604. http://dx.doi.org/10.3390/cells12040604.
Повний текст джерелаSaqib, Jahanzeb, Beomsu Park, Yunjung Jin, Junseo Seo, Jaewoo Mo, and Junil Kim. "Identification of Niche-Specific Gene Signatures between Malignant Tumor Microenvironments by Integrating Single Cell and Spatial Transcriptomics Data." Genes 14, no. 11 (October 31, 2023): 2033. http://dx.doi.org/10.3390/genes14112033.
Повний текст джерелаLi, Zhuliu, Tianci Song, Jeongsik Yong, and Rui Kuang. "Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion." PLOS Computational Biology 17, no. 4 (April 7, 2021): e1008218. http://dx.doi.org/10.1371/journal.pcbi.1008218.
Повний текст джерелаDries, Ruben, Jiaji Chen, Natalie del Rossi, Mohammed Muzamil Khan, Adriana Sistig, and Guo-Cheng Yuan. "Advances in spatial transcriptomic data analysis." Genome Research 31, no. 10 (October 2021): 1706–18. http://dx.doi.org/10.1101/gr.275224.121.
Повний текст джерелаMirchia, Kanish, Soo-Jin Cho, Alyssa T. Reddy, Line Jacques, Melike Pekmezci, Arie Perry, David Raleigh, and Harish Vasudevan. "EPCO-04. SPATIAL TRANSCRIPTOMIC ANALYSIS OF MALIGNANT PERIPHERAL NERVE SHEATH TUMORS REVEALS THERAPEUTICALLY TARGETABLE MOLECULAR SIGNATURES IN REGIONS UNDERGOING HISTOPATHOLOGIC TRANSFORMATION." Neuro-Oncology 25, Supplement_5 (November 1, 2023): v124. http://dx.doi.org/10.1093/neuonc/noad179.0469.
Повний текст джерелаNesterenko, Maksim, and Aleksei Miroliubov. "From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)." F1000Research 11 (May 27, 2022): 583. http://dx.doi.org/10.12688/f1000research.110492.1.
Повний текст джерелаNesterenko, Maksim, and Aleksei Miroliubov. "From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)." F1000Research 11 (January 9, 2023): 583. http://dx.doi.org/10.12688/f1000research.110492.2.
Повний текст джерелаRitter, M., C. Blume, B. Patel, Y. Tang, A. Patel, N. Berghaus, Z. Seferbekova, et al. "OS10.8.A APPLICATIONS OF NOVEL FFPE BASED TECHNOLOGIES FOR THE DIAGNOSTICS OF GLIOMAS." Neuro-Oncology 25, Supplement_2 (September 1, 2023): ii23. http://dx.doi.org/10.1093/neuonc/noad137.068.
Повний текст джерелаLee, Amos C., Sumin Lee, and Sunghoon Kwon. "Abstract 6781: Spatial omics using spatially-resolved laser-activated cell sorting for cancer biomarker discovery." Cancer Research 83, no. 7_Supplement (April 4, 2023): 6781. http://dx.doi.org/10.1158/1538-7445.am2023-6781.
Повний текст джерелаWood, Colin Stuart, Joao Da Silva Filho, Andrew Cameron, Assya Legrini, Holly Leslie, Tengyu Zhang, Yoana Doncheva, et al. "Abstract 5072: Multi-omic, multi-scale characterisation of colorectal cancer defines spatiotemporal patterns of recurrence." Cancer Research 84, no. 6_Supplement (March 22, 2024): 5072. http://dx.doi.org/10.1158/1538-7445.am2024-5072.
Повний текст джерелаJamshidi, Raehannah, Lyra Griffiths, Rich Johnston, Vaunita Parihar, Frank Schneider, and Adam Marcus. "Abstract 1153: Using spatial transcriptomics to dissect cell to cell cooperation in lung adenocarcinoma." Cancer Research 84, no. 6_Supplement (March 22, 2024): 1153. http://dx.doi.org/10.1158/1538-7445.am2024-1153.
Повний текст джерелаMisra, Adwiteeya, Cameron D. Baker, Elizabeth M. Pritchett, Kimberly N. Burgos Villar, John M. Ashton, and Eric M. Small. "Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics." Journal of Cardiovascular Development and Disease 9, no. 1 (December 21, 2021): 1. http://dx.doi.org/10.3390/jcdd9010001.
Повний текст джерелаMirchia, Kanish, Abrar Choudhury, Tara Joseph, Janeth Ochoa Birrueta, Joanna Phillips, Aparna Bhaduri, Elizabeth Crouch, Arie Perry, and David Raleigh. "EPCO-48. THE SINGLE-CELL AND SPATIAL TRANSCRIPTOMIC ARCHITECTURE OF MENINGEAL SOLITARY FIBROUS TUMORS PHENOCOPIES CEREBRAL VASCULAR DEVELOPMENT AND HOMEOSTASIS." Neuro-Oncology 25, Supplement_5 (November 1, 2023): v135. http://dx.doi.org/10.1093/neuonc/noad179.0510.
Повний текст джерелаWu, Yuesong, Aoqi Xie, Ian Loveless, Madison George, Kendyll Gartrelle, Julie Clark, Daniel Salas-Escabillas, et al. "Abstract C107: Use of spatial transcriptomics to identify molecular features associated with African American heritage in pancreatic cancer." Cancer Research 84, no. 2_Supplement (January 16, 2024): C107. http://dx.doi.org/10.1158/1538-7445.panca2023-c107.
Повний текст джерелаAkilesh, Shreeram, Kammi J. Henriksen, Roberto F. Nicosia, Charles E. Alpers, and Kelly D. Smith. "Spatial Transcriptomic Profiling of Collapsing Glomerulopathy." Journal of the American Society of Nephrology 32, no. 10S (October 2021): 519. http://dx.doi.org/10.1681/asn.20213210s1519a.
Повний текст джерелаChoe, Kyongho, Unil Pak, Yu Pang, Wanjun Hao, and Xiuqin Yang. "Advances and Challenges in Spatial Transcriptomics for Developmental Biology." Biomolecules 13, no. 1 (January 12, 2023): 156. http://dx.doi.org/10.3390/biom13010156.
Повний текст джерелаJeon, Hyeongseon, Juan Xie, Yeseul Jeon, Kyeong Joo Jung, Arkobrato Gupta, Won Chang, and Dongjun Chung. "Statistical Power Analysis for Designing Bulk, Single-Cell, and Spatial Transcriptomics Experiments: Review, Tutorial, and Perspectives." Biomolecules 13, no. 2 (January 24, 2023): 221. http://dx.doi.org/10.3390/biom13020221.
Повний текст джерелаWu, Zhichao, Karen Dazelle, Hye-Jung Chung, and Kenneth Aldape. "TMIC-25. SPATIAL TRANSCRIPTOMIC LANDSCAPE OF DIFFUSE GLIOMA." Neuro-Oncology 24, Supplement_7 (November 1, 2022): vii276—vii277. http://dx.doi.org/10.1093/neuonc/noac209.1069.
Повний текст джерелаWilliams, Cameron Gerard, Jessica A. Engel, Megan S. F. Soon, Evan Murray, Fei Chen, and Ashraful Haque. "Studying lymphocyte differentiation in the spleen via spatial transcriptomics." Journal of Immunology 206, no. 1_Supplement (May 1, 2021): 98.55. http://dx.doi.org/10.4049/jimmunol.206.supp.98.55.
Повний текст джерелаda Costa, André Luiz N. Targino, Jingxian Liu, Chia-Kuei Mo, Erik Storrs, Austin N. Southard-Smith, Reyka G. Jayasinghe, Julia T. Wang, et al. "Abstract 2341: Morph: A feature extraction toolset for spatial transcriptomics." Cancer Research 84, no. 6_Supplement (March 22, 2024): 2341. http://dx.doi.org/10.1158/1538-7445.am2024-2341.
Повний текст джерелаChen, Ce, Yining Ge, and Lingli Lu. "Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants." Frontiers in Plant Science 14 (August 11, 2023). http://dx.doi.org/10.3389/fpls.2023.1185377.
Повний текст джерелаShao, Xin, Chengyu Li, Haihong Yang, Xiaoyan Lu, Jie Liao, Jingyang Qian, Kai Wang, et al. "Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk." Nature Communications 13, no. 1 (July 30, 2022). http://dx.doi.org/10.1038/s41467-022-32111-8.
Повний текст джерелаShang, Lulu, and Xiang Zhou. "Spatially aware dimension reduction for spatial transcriptomics." Nature Communications 13, no. 1 (November 23, 2022). http://dx.doi.org/10.1038/s41467-022-34879-1.
Повний текст джерелаDanan, Charles H., Kay Katada, Louis R. Parham, and Kathryn E. Hamilton. "Spatial transcriptomics add a new dimension to our understanding of the gut." American Journal of Physiology-Gastrointestinal and Liver Physiology, December 6, 2022. http://dx.doi.org/10.1152/ajpgi.00191.2022.
Повний текст джерелаRocque, Brittany, Kate Guion, Pranay Singh, Sarah Bangerth, Lauren Pickard, Jashdeep Bhattacharjee, Sofia Eguizabal, et al. "Technical optimization of spatially resolved single-cell transcriptomic datasets to study clinical liver disease." Scientific Reports 14, no. 1 (February 13, 2024). http://dx.doi.org/10.1038/s41598-024-53993-2.
Повний текст джерелаPont, Frédéric, Juan Pablo Cerapio, Pauline Gravelle, Laetitia Ligat, Carine Valle, Emeline Sarot, Marion Perrier, et al. "Single-cell spatial explorer: easy exploration of spatial and multimodal transcriptomics." BMC Bioinformatics 24, no. 1 (January 27, 2023). http://dx.doi.org/10.1186/s12859-023-05150-1.
Повний текст джерелаWirth, Johannes, Nina Huber, Kelvin Yin, Sophie Brood, Simon Chang, Celia P. Martinez-Jimenez, and Matthias Meier. "Spatial transcriptomics using multiplexed deterministic barcoding in tissue." Nature Communications 14, no. 1 (March 18, 2023). http://dx.doi.org/10.1038/s41467-023-37111-w.
Повний текст джерелаJohnston, Kevin G., Bereket T. Berackey, Kristine M. Tran, Alon Gelber, Zhaoxia Yu, Grant R. MacGregor, Eran A. Mukamel, Zhiqun Tan, Kim N. Green, and Xiangmin Xu. "Single-cell spatial transcriptomics reveals distinct patterns of dysregulation in non-neuronal and neuronal cells induced by the Trem2R47H Alzheimer’s risk gene mutation." Molecular Psychiatry, August 5, 2024. http://dx.doi.org/10.1038/s41380-024-02651-0.
Повний текст джерелаMao, Guangyao, Yi Yang, Zhuojuan Luo, Chengqi Lin, and Peng Xie. "SpatialQC: automated quality control for spatial transcriptome data." Bioinformatics, July 25, 2024. http://dx.doi.org/10.1093/bioinformatics/btae458.
Повний текст джерелаXu, Zhicheng, Weiwen Wang, Tao Yang, Ling Li, Xizheng Ma, Jing Chen, Jieyu Wang, et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization." Nucleic Acids Research, November 11, 2023. http://dx.doi.org/10.1093/nar/gkad933.
Повний текст джерелаZhang, Chao, Renchao Chen, and Yi Zhang. "Accurate inference of genome-wide spatial expression with iSpatial." Science Advances 8, no. 34 (August 26, 2022). http://dx.doi.org/10.1126/sciadv.abq0990.
Повний текст джерелаFan, Zhen, Runsheng Chen, and Xiaowei Chen. "SpatialDB: a database for spatially resolved transcriptomes." Nucleic Acids Research, November 12, 2019. http://dx.doi.org/10.1093/nar/gkz934.
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