Добірка наукової літератури з теми "SARS-CoV-2 sequencing"
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Статті в журналах з теми "SARS-CoV-2 sequencing"
Nazario-Toole, Ashley, Holly M. Nguyen, Hui Xia, Dianne N. Frankel, John W. Kieffer, and Thomas F. Gibbons. "Sequencing SARS-CoV-2 from antigen tests." PLOS ONE 17, no. 2 (February 8, 2022): e0263794. http://dx.doi.org/10.1371/journal.pone.0263794.
Повний текст джерелаMugnier, Nathalie, Aurélien Griffon, Bruno Simon, Maxence Rambaud, Hadrien Regue, Antonin Bal, Gregory Destras, et al. "Evaluation of EPISEQ SARS-CoV-2 and a Fully Integrated Application to Identify SARS-CoV-2 Variants from Several Next-Generation Sequencing Approaches." Viruses 14, no. 8 (July 29, 2022): 1674. http://dx.doi.org/10.3390/v14081674.
Повний текст джерелаTurakhia, Yatish, Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R. Walker, Angie S. Hinrichs, et al. "Stability of SARS-CoV-2 phylogenies." PLOS Genetics 16, no. 11 (November 18, 2020): e1009175. http://dx.doi.org/10.1371/journal.pgen.1009175.
Повний текст джерелаSekulic, Miroslav, Holly Harper, Behtash G. Nezami, Daniel L. Shen, Simona Pichler Sekulic, Aaron T. Koeth, Clifford V. Harding, Hannah Gilmore, and Navid Sadri. "Molecular Detection of SARS-CoV-2 Infection in FFPE Samples and Histopathologic Findings in Fatal SARS-CoV-2 Cases." American Journal of Clinical Pathology 154, no. 2 (May 26, 2020): 190–200. http://dx.doi.org/10.1093/ajcp/aqaa091.
Повний текст джерелаXiaoli, Lingzi, Jill V. Hagey, Daniel J. Park, Christopher A. Gulvik, Erin L. Young, Nabil-Fareed Alikhan, Adrian Lawsin, et al. "Benchmark datasets for SARS-CoV-2 surveillance bioinformatics." PeerJ 10 (September 5, 2022): e13821. http://dx.doi.org/10.7717/peerj.13821.
Повний текст джерелаMavzyutov, A. R., R. R. Garafutdinov, E. Yu Khalikova, R. R. Gazizov, An Kh Baymiev, Yu M. Nikonorov, I. V. Maksimov, B. R. Kuluev, Al Kh Baymiev, and A. V. Chemeris. "The enigmas of the new coronavirus SARS-CoV-2." Biomics 13, no. 1 (2021): 75–99. http://dx.doi.org/10.31301/2221-6197.bmcs.2021-7.
Повний текст джерелаPetersen, J. M., and D. Jhala. "Sequencing for COVID-19 in the Pandemic Era: What Does it Mean?" American Journal of Clinical Pathology 156, Supplement_1 (October 1, 2021): S140—S141. http://dx.doi.org/10.1093/ajcp/aqab191.300.
Повний текст джерелаNasir, Jalees A., Robert A. Kozak, Patryk Aftanas, Amogelang R. Raphenya, Kendrick M. Smith, Finlay Maguire, Hassaan Maan, et al. "A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture." Viruses 12, no. 8 (August 15, 2020): 895. http://dx.doi.org/10.3390/v12080895.
Повний текст джерелаCrawford, Dana C., and Scott M. Williams. "Global variation in sequencing impedes SARS-CoV-2 surveillance." PLOS Genetics 17, no. 7 (July 15, 2021): e1009620. http://dx.doi.org/10.1371/journal.pgen.1009620.
Повний текст джерелаAvetyan, Diana, Siras Hakobyan, Maria Nikoghosyan, Lilit Ghukasyan, Gisane Khachatryan, Tamara Sirunyan, Nelli Muradyan, et al. "Molecular Analysis of SARS-CoV-2 Lineages in Armenia." Viruses 14, no. 5 (May 17, 2022): 1074. http://dx.doi.org/10.3390/v14051074.
Повний текст джерелаДисертації з теми "SARS-CoV-2 sequencing"
Venkatesan, Lavanya. "Identifying and Tracking the Evolution of Mutations in the SARS-CoV-2 Virus." Thesis, Virginia Tech, 2021. http://hdl.handle.net/10919/103939.
Повний текст джерелаMaster of Science
A novel corona virus named Severe Acute Respiratory Syndrome Corona Virus 2 (SARS-CoV-2) has taken down the entire world by causing Covid-19 pandemic. Initially detected in Wuhan, China, the virus has now made its way to more than 200 countries with a heavy death toll. Understanding the virus through mutation tracking and improving diagnostics and vaccine design have now become the top priority of researchers. Most of these researchers depend on quality viral sequence datasets to identify and track mutations. One aim of this study is to provide a comprehensive dataset linking the GISAID (Global Initiative on Sharing All Influenza Data), NCBI (National Center for Biological Information) and the SRA (Sequence Read Archive) sequences. The dataset can be used for genome analysis and mutation tracking which can provide important insights for vaccine design and in improving diagnostic assays. In addition, this study provides an analysis of viral mutations in in the genomic regions targeted by commonly used primers in the RT-PCR tests for SARS-CoV-2 that may affect the efficiency of detection. This study also uses the haplogroup information of people across the world to track the D614G mutation on the S gene of SARS-CoV-2 as it may be associated with increased transmissibility. To track the course of mutations in SARS-CoV-2, it is important to analyze the sequencing data provided by the Illumina and Oxford Nanopore next generation sequencing methods. We present a case study to investigate the course of SARS-CoV-2 mutations in a single septuagenarian patient over a period of 102days using the Sequence Read Archive (SRA) data generated by two Next Generation Sequencing methods and compare the advantages that one has over the other.
GRIMALDI, ANTONIO. "AN IMPROVED GENOMIC SURVEILLANCE APPROACH TO DISSECT THE SARS-COV-2 PANDEMIC." Doctoral thesis, Università degli Studi di Milano, 2022. https://hdl.handle.net/2434/946458.
Повний текст джерелаMartignano, Filippo, Salvatore Di Giorgio, Maria Gabriella Torcia, Giorgio Mattiuz, Silvestro Conticello, Stefania Crucitta, Alessandra Mingrino, et al. "Sequencing-based approaches for the study of Lung-related diseases." Doctoral thesis, Università di Siena, 2020. http://hdl.handle.net/11365/1120728.
Повний текст джерелаPINZAUTI, DAVID. "Implementation of a flexible Oxford Nanopore sequencing platform for microbial genomics." Doctoral thesis, Università di Siena, 2021. http://hdl.handle.net/11365/1138520.
Повний текст джерелаWang, Xuanting. "Identification of SARS-CoV-2 Polymerase and Exonuclease Inhibitors and Novel Methods for Single-Color Fluorescent DNA Sequencing by Synthesis." Thesis, 2021. https://doi.org/10.7916/d8-n6ah-nt76.
Повний текст джерелаЧастини книг з теми "SARS-CoV-2 sequencing"
Yan, Yan, and Qinxue Hu. "Molecular Epidemiology of SARS-CoV-2 by Sequencing." In Methods in Molecular Biology, 19–32. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2111-0_2.
Повний текст джерелаKnyazev, Sergey, Daniel Novikov, Mark Grinshpon, Harman Singh, Ram Ayyala, Varuni Sarwal, Roya Hosseini, et al. "A Novel Network Representation of SARS-CoV-2 Sequencing Data." In Bioinformatics Research and Applications, 165–75. Cham: Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-91415-8_15.
Повний текст джерелаChourasia, Prakash, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, and Murray Patterson. "Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data." In Computational Advances in Bio and Medical Sciences, 133–48. Cham: Springer International Publishing, 2022. http://dx.doi.org/10.1007/978-3-031-17531-2_11.
Повний текст джерелаSpeicher, David J., Jalees A. Nasir, Peng Zhou, and Danielle E. Anderson. "Whole-Genome Sequencing of Pathogens in : A Target-Enrichment Approach for SARS-CoV-2." In Methods in Molecular Biology, 119–37. New York, NY: Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1518-8_8.
Повний текст джерелаCorredor-Vargas, A. M., R. Torezani, G. Paneto, and T. F. Bastos-Filho. "Importance of Sequencing the SARS-CoV-2 Genome Using the Nanopore Technique to Understand Its Origin, Evolution and Development of Possible Cures." In XXVII Brazilian Congress on Biomedical Engineering, 1341–44. Cham: Springer International Publishing, 2022. http://dx.doi.org/10.1007/978-3-030-70601-2_199.
Повний текст джерелаKumar, Arbind, Aashish Sharma, Narendra Vijay Tirpude, Yogendra Padwad, Shaifali Sharma, and Sanjay Kumar. "Perspective Chapter: Emerging SARS-CoV-2 Variants of Concern (VOCs) and Their Impact on Transmission Rate, Disease Severity and Breakthrough Infections." In Infectious Diseases. IntechOpen, 2022. http://dx.doi.org/10.5772/intechopen.107844.
Повний текст джерелаPatil, Shashank M., Chandrashekar Srinivasa, Ramith Ramu, Shiva Prasad Kollur, Suhas Ramesh, and Chandan Shivamallu. "SARS-CoV-2 genome sequencing and promising druggable targets." In Coronavirus Drug Discovery, 3–22. Elsevier, 2022. http://dx.doi.org/10.1016/b978-0-323-95578-2.00004-2.
Повний текст джерелаPaz, Mercedes, Pilar Moreno, and Gonzalo Moratorio. "Perspective Chapter: Real-Time Genomic Surveillance for SARS-CoV-2 on Center Stage." In Infectious Diseases. IntechOpen, 2022. http://dx.doi.org/10.5772/intechopen.107842.
Повний текст джерелаCristina Diaconu, Carmen, Ioana Madalina Pitica, Mihaela Chivu-Economescu, Laura Georgiana Necula, Anca Botezatu, Iulia Virginia Iancu, Ana Iulia Neagu, et al. "SARS-CoV-2 Variant Surveillance in Genomic Medicine Era." In Infectious Diseases. IntechOpen, 2022. http://dx.doi.org/10.5772/intechopen.107137.
Повний текст джерелаVlasova-St. Louis, Irina, Andrew Gorzalski, and Mark Pandori. "Diagnostic Applications for RNA-Seq Technology and Transcriptome Analyses in Human Diseases Caused by RNA Viruses." In Applications of RNA-Seq in Biology and Medicine [Working Title]. IntechOpen, 2021. http://dx.doi.org/10.5772/intechopen.99156.
Повний текст джерелаТези доповідей конференцій з теми "SARS-CoV-2 sequencing"
"APPLICATIONS OF SARS-COV-2 SEQUENCING DATA." In 14th International Conference on Computer Graphics, Visualization, Computer Vision and Image Processing. IADIS Press, 2020. http://dx.doi.org/10.33965/bigdaci2020_202011c034.
Повний текст джерелаBenslimane, Fatiha M., Hebah Al Khatib, Dana Albatesh, Ola Al-Jamal, Sonia Boughattas, Asmaa A. Althani, and Hadi M. Yassine. "Nanopore Sequencing SARS-CoV-2 Genome in Qatar." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0289.
Повний текст джерелаYuan, Yingzhi. "SARS-CoV-2: next generation sequencing and analysis." In International Conference on Biomedical and Intelligent Systems (IC-BIS 2022), edited by Ahmed El-Hashash. SPIE, 2022. http://dx.doi.org/10.1117/12.2660958.
Повний текст джерелаKille, Bryce, Yunxi Liu, Nicolae Sapoval, Michael Nute, Lawrence Rauchwerger, Nancy Amato, and Todd J. Treangen. "Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets." In 2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). IEEE, 2021. http://dx.doi.org/10.1109/ipdpsw52791.2021.00038.
Повний текст джерелаHsu, Po-Kai, and Shimeng Yu. "In-Memory 3D NAND Flash Hyperdimensional Computing Engine for Energy-Efficient SARS-CoV-2 Genome Sequencing." In 2022 IEEE International Memory Workshop (IMW). IEEE, 2022. http://dx.doi.org/10.1109/imw52921.2022.9779291.
Повний текст джерелаKaptelova, V. V., A. S. Speranskaya, A. E. Samoilov, A. V. Valdokhina, V. P. Bulanenko, E. V. Korneenko, O. Y. Shipulina, and V. G. Akimkin. "MUTATIONS IN THE GENOMES OF SARS-COV-2 FROM CLINICAL SAMPLES OBTAINED IN LATE MARCH-EARLY APRIL FROM PATIENTS IN MOSCOW." In Molecular Diagnostics and Biosafety. Federal Budget Institute of Science 'Central Research Institute for Epidemiology', 2020. http://dx.doi.org/10.36233/978-5-9900432-9-9-147.
Повний текст джерелаAl Khatib, Hebah A., Fatiha M. Benslimane, Israa El Bashir, Asmaa A. Al Thani, and Hadi M. Yassine. "Within-Host Diversity of SARS-Cov-2 in COVID-19 Patients with Variable Disease Severities." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0280.
Повний текст джерелаDerecichei, Iulian, and Govindaraja Atikukke. "Machine Learning Model to Track SARS-CoV-2 Viral Mutation Evolution and Speciation Using Next-generation Sequencing Data." In BCB '20: 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics. New York, NY, USA: ACM, 2020. http://dx.doi.org/10.1145/3388440.3415991.
Повний текст джерелаNouailles, Geraldine, Emanuel Wyler, Peter Pennitz, Dylan Postmus, Daria Vladimirova, Julia Kazmierski, Fabian Pott, et al. "Single-cell-sequencing in SARS-COV-2-infected hamsters sheds light on endothelial cell involvement in COVID-19." In ERS International Congress 2021 abstracts. European Respiratory Society, 2021. http://dx.doi.org/10.1183/13993003.congress-2021.pa2355.
Повний текст джерелаLi, Chenyu, David N. Debruyne, Julia Spencer, Vidushi Kapoor, Lily Y. Liu, Bo Zhou, Utsav Pandey, et al. "Abstract S08-01: Highly sensitive and full-genome interrogation of SARS-CoV-2 using multiplexed PCR enrichment followed by next-generation sequencing." In AACR Virtual Meeting: COVID-19 and Cancer; July 20-22, 2020. American Association for Cancer Research, 2020. http://dx.doi.org/10.1158/1557-3265.covid-19-s08-01.
Повний текст джерелаЗвіти організацій з теми "SARS-CoV-2 sequencing"
Gleasner, Cheryl, Kimberly Mcmurry, Julia Kelliher, and Andrew Hatch. Illumina Sequencing for SARS-CoV-2 Training [Slides]. Office of Scientific and Technical Information (OSTI), May 2021. http://dx.doi.org/10.2172/1782612.
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