Статті в журналах з теми "RNA-Protein docking"
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Ознайомтеся з топ-50 статей у журналах для дослідження на тему "RNA-Protein docking".
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Arnautova, Yelena A., Ruben Abagyan, and Maxim Totrov. "Protein-RNA Docking Using ICM." Journal of Chemical Theory and Computation 14, no. 9 (July 17, 2018): 4971–84. http://dx.doi.org/10.1021/acs.jctc.8b00293.
Повний текст джерелаHe, Jiahua, Huanyu Tao, and Sheng-You Huang. "Protein-ensemble–RNA docking by efficient consideration of protein flexibility through homology models." Bioinformatics 35, no. 23 (May 14, 2019): 4994–5002. http://dx.doi.org/10.1093/bioinformatics/btz388.
Повний текст джерелаDelgado Blanco, Javier, Leandro G. Radusky, Damiano Cianferoni, and Luis Serrano. "Protein-assisted RNA fragment docking (RnaX) for modeling RNA–protein interactions using ModelX." Proceedings of the National Academy of Sciences 116, no. 49 (November 15, 2019): 24568–73. http://dx.doi.org/10.1073/pnas.1910999116.
Повний текст джерелаPérez-Cano, Laura, Miguel Romero-Durana, and Juan Fernández-Recio. "Structural and energy determinants in protein-RNA docking." Methods 118-119 (April 2017): 163–70. http://dx.doi.org/10.1016/j.ymeth.2016.11.001.
Повний текст джерелаZhang, Zhao, Lin Lu, Yue Zhang, Chun Hua Li, Cun Xin Wang, Xiao Yi Zhang, and Jian Jun Tan. "A combinatorial scoring function for protein-RNA docking." Proteins: Structure, Function, and Bioinformatics 85, no. 4 (February 9, 2017): 741–52. http://dx.doi.org/10.1002/prot.25253.
Повний текст джерелаZheng, Jinfang, Xu Hong, Juan Xie, Xiaoxue Tong, and Shiyong Liu. "P3DOCK: a protein–RNA docking webserver based on template-based and template-free docking." Bioinformatics 36, no. 1 (June 7, 2019): 96–103. http://dx.doi.org/10.1093/bioinformatics/btz478.
Повний текст джерелаSetny, Piotr, and Martin Zacharias. "A coarse-grained force field for Protein–RNA docking." Nucleic Acids Research 39, no. 21 (August 16, 2011): 9118–29. http://dx.doi.org/10.1093/nar/gkr636.
Повний текст джерелаNithin, Chandran, Sunandan Mukherjee, and Ranjit Prasad Bahadur. "A non-redundant protein-RNA docking benchmark version 2.0." Proteins: Structure, Function, and Bioinformatics 85, no. 2 (December 2, 2016): 256–67. http://dx.doi.org/10.1002/prot.25211.
Повний текст джерелаWicaksono, Adhityo, and Arli Aditya Parikesit. "Molecular Docking and Dynamics of SARS-CoV-2 Programmed Ribosomal Frameshifting RNA and Ligands for RNA-Targeting Alkaloids Prospecting." HAYATI Journal of Biosciences 30, no. 6 (July 24, 2023): 1025–35. http://dx.doi.org/10.4308/hjb.30.6.1025-1035.
Повний текст джерелаLi, Yaozong, Jie Shen, Xianqiang Sun, Weihua Li, Guixia Liu, and Yun Tang. "Accuracy Assessment of Protein-Based Docking Programs against RNA Targets." Journal of Chemical Information and Modeling 50, no. 6 (May 19, 2010): 1134–46. http://dx.doi.org/10.1021/ci9004157.
Повний текст джерелаGuilhot-Gaudeffroy, Adrien, Christine Froidevaux, Jérôme Azé, and Julie Bernauer. "Protein-RNA Complexes and Efficient Automatic Docking: Expanding RosettaDock Possibilities." PLoS ONE 9, no. 9 (September 30, 2014): e108928. http://dx.doi.org/10.1371/journal.pone.0108928.
Повний текст джерелаHuang, Sheng-You, and Xiaoqin Zou. "A nonredundant structure dataset for benchmarking protein-RNA computational docking." Journal of Computational Chemistry 34, no. 4 (October 10, 2012): 311–18. http://dx.doi.org/10.1002/jcc.23149.
Повний текст джерелаMarium Bibi, Marium Bibi. "Binding Pattern Analysis of Different Allosteric Inhibitors of Hepatitis C Virus (HCV) Polymerase." Journal of the chemical society of pakistan 45, no. 6 (2023): 576. http://dx.doi.org/10.52568/001393/jcsp/45.06.2023.
Повний текст джерелаMarwal, Avinash, Mukesh Meena, and RK Gaur. "Molecular Docking Studies of Coronavirus Proteins with Medicinal Plant Based Phytochemicals." Defence Life Science Journal 6, no. 1 (February 23, 2021): 57–63. http://dx.doi.org/10.14429/dlsj.6.15704.
Повний текст джерелаSelvaraj, Jayaraman. "Molecular docking analysis of SARS-CoV-2 linked RNA dependent RNA polymerase (RdRp) with compounds from Plectranthus amboinicus." Bioinformation 17, no. 1 (January 31, 2021): 167–70. http://dx.doi.org/10.6026/97320630017167.
Повний текст джерелаStefaniak, Filip, and Janusz M. Bujnicki. "AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses." PLOS Computational Biology 17, no. 2 (February 1, 2021): e1008309. http://dx.doi.org/10.1371/journal.pcbi.1008309.
Повний текст джерелаda Silva, Joyce Kelly R., Pablo Luis Baia Figueiredo, Kendall G. Byler, and William N. Setzer. "Essential Oils as Antiviral Agents, Potential of Essential Oils to Treat SARS-CoV-2 Infection: An In-Silico Investigation." International Journal of Molecular Sciences 21, no. 10 (May 12, 2020): 3426. http://dx.doi.org/10.3390/ijms21103426.
Повний текст джерелаMa, Hongli, Han Wen, Zhiyuan Xue, Guojun Li, and Zhaolei Zhang. "RNANetMotif: Identifying sequence-structure RNA network motifs in RNA-protein binding sites." PLOS Computational Biology 18, no. 7 (July 12, 2022): e1010293. http://dx.doi.org/10.1371/journal.pcbi.1010293.
Повний текст джерелаYan, Yumeng, Di Zhang, Pei Zhou, Botong Li, and Sheng-You Huang. "HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy." Nucleic Acids Research 45, W1 (May 17, 2017): W365—W373. http://dx.doi.org/10.1093/nar/gkx407.
Повний текст джерелаSharma, Arun Dev, Inderjeet Kaur, and Amrita Chauhan. "Targeting H3N2 influenza virus RNA dependent RNA polymerase dependent inhibitory activity by principal components from latex of Calotropis gigantean." Trends in Horticulture 6, no. 2 (November 17, 2023): 2940. http://dx.doi.org/10.24294/th.v6i2.2940.
Повний текст джерелаEmmanuel Chuks Oranu, Esther Oluchukwu Eze, Adanna Ijeawele, Chisom George Obidimma, Belinda Chinecherem Umeh, Perpetua Chinonyelum Ejezie, and IC Uzochukwu. "Validation of the binding affinities and stabilities of ivermectin and moxidectin against Sars-CoV-2 receptors using molecular docking and molecular dynamics simulation." GSC Biological and Pharmaceutical Sciences 26, no. 1 (January 30, 2024): 303–14. http://dx.doi.org/10.30574/gscbps.2024.26.1.0030.
Повний текст джерелаIvashkina, Natalia, Benno Wölk, Volker Lohmann, Ralf Bartenschlager, Hubert E. Blum, François Penin, and Darius Moradpour. "The Hepatitis C Virus RNA-Dependent RNA Polymerase Membrane Insertion Sequence Is a Transmembrane Segment." Journal of Virology 76, no. 24 (December 15, 2002): 13088–93. http://dx.doi.org/10.1128/jvi.76.24.13088-13093.2002.
Повний текст джерелаAsadzadeh, Homayoun, Ali Moosavi, Georgios Alexandrakis та Mohammad R. K. Mofrad. "Atomic Scale Interactions between RNA and DNA Aptamers with the TNF-α Protein". BioMed Research International 2021 (16 липня 2021): 1–11. http://dx.doi.org/10.1155/2021/9926128.
Повний текст джерелаKappel, Kalli, and Rhiju Das. "Sampling Native-like Structures of RNA-Protein Complexes through Rosetta Folding and Docking." Structure 27, no. 1 (January 2019): 140–51. http://dx.doi.org/10.1016/j.str.2018.10.001.
Повний текст джерелаThakur, Priti, Jowad Atway, Patrick A. Limbach, and Balasubrahmanyam Addepalli. "RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site." International Journal of Molecular Sciences 23, no. 13 (June 24, 2022): 7021. http://dx.doi.org/10.3390/ijms23137021.
Повний текст джерелаEbenezer, Oluwakemi, Nkululeko Damoyi, Maryam A. Jordaan, and Michael Shapi. "Unveiling of Pyrimidindinones as Potential Anti-Norovirus Agents—A Pharmacoinformatic-Based Approach." Molecules 27, no. 2 (January 7, 2022): 380. http://dx.doi.org/10.3390/molecules27020380.
Повний текст джерелаHe, Jiahua, Jun Wang, Huanyu Tao, Yi Xiao, and Sheng-You Huang. "HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures." Nucleic Acids Research 47, W1 (May 22, 2019): W35—W42. http://dx.doi.org/10.1093/nar/gkz412.
Повний текст джерелаAdasme, Melissa F., Katja L. Linnemann, Sarah Naomi Bolz, Florian Kaiser, Sebastian Salentin, V. Joachim Haupt, and Michael Schroeder. "PLIP 2021: expanding the scope of the protein–ligand interaction profiler to DNA and RNA." Nucleic Acids Research 49, W1 (May 5, 2021): W530—W534. http://dx.doi.org/10.1093/nar/gkab294.
Повний текст джерелаNAWAZ, A., and B. IJAZ. "ANTIVIRAL SCREENING OF AZADIRACHTA INDICA PHYTOCHEMICALS AS DENGUE NS5 INHIBITOR: A MOLECULAR DOCKING APPROACH." Biological and Clinical Sciences Research Journal 2023, no. 1 (November 27, 2023): 560. http://dx.doi.org/10.54112/bcsrj.v2023i1.560.
Повний текст джерелаYIP, Ryan Pak Hong, Doris Ching Ying Kwok, Louis Tung Faat Lai, Siu-Ming Ho, Ivan Chun Kit Wong, Chi-Ping Chan, Wilson Chun Yu Lau, and Jacky Chi Ki Ngo. "SRPK2 Mediates HBV Core Protein Phosphorylation and Capsid Assembly via Docking Interaction." PLOS Pathogens 20, no. 2 (February 7, 2024): e1011978. http://dx.doi.org/10.1371/journal.ppat.1011978.
Повний текст джерелаDickerhoff, Jonathan, Kassandra R. Warnecke, Kaibo Wang, Nanjie Deng, and Danzhou Yang. "Evaluating Molecular Docking Software for Small Molecule Binding to G-Quadruplex DNA." International Journal of Molecular Sciences 22, no. 19 (October 6, 2021): 10801. http://dx.doi.org/10.3390/ijms221910801.
Повний текст джерелаLi, Gang, Wei Zhou, Xiurong Zhao, and Ying Xie. "In Silico Molecular Docking and Interaction Analysis of Traditional Chinese Medicines Against SARS-CoV-2 Receptor." Natural Product Communications 16, no. 5 (May 2021): 1934578X2110150. http://dx.doi.org/10.1177/1934578x211015030.
Повний текст джерелаSharma, Arun Dev, and Inderjeet Kaur. "Targeting H3N2 Influenza Virus RNA-dependent RNA Polymerase by Using Bioactives from Essential Oils from Eucalyptus polybrachtea, Cymbopogon citratus and Cymbopogon khasianus." Biology, Medicine, & Natural Product Chemistry 12, no. 2 (September 15, 2023): 515–24. http://dx.doi.org/10.14421/biomedich.2023.122.515-524.
Повний текст джерелаMustafa, Ghulam, Hafiza Salaha Mahrosh, Mahwish Salman, Muhammad Ali, Rawaba Arif, Sibtain Ahmed, and Hossam Ebaid. "In Silico Analysis of Honey Bee Peptides as Potential Inhibitors of Capripoxvirus DNA-Directed RNA Polymerase." Animals 13, no. 14 (July 12, 2023): 2281. http://dx.doi.org/10.3390/ani13142281.
Повний текст джерелаDawood, Ali A. "Influence of SARS-CoV-2 variants’ spike glycoprotein and RNA-dependent RNA polymerase (nsp12) mutations on remdesivir docking residues." Medical Immunology (Russia) 24, no. 3 (July 13, 2022): 617–28. http://dx.doi.org/10.15789/1563-0625-ios-2486.
Повний текст джерелаBui, Thanh Tung, Bao Kim Nguyen, Minh Ngoc Le, The Toan Nguyen, and The Hai Pham. "In silico screening of drug inhibitors of SARS-CoV-2RNA-dependent RNA polymerase target." Ministry of Science and Technology, Vietnam 63, no. 4 (December 15, 2021): 47–54. http://dx.doi.org/10.31276/vjste.63(4).47-54.
Повний текст джерелаYamkela, Mthembu, Zingisa Sitobo, and Xolani H. Makhoba. "In Silico Analysis of SARS-CoV-2 Non-Structural Proteins Reveals an Interaction with the Host’s Heat Shock Proteins That May Contribute to Viral Replications and Development." Current Issues in Molecular Biology 45, no. 12 (December 18, 2023): 10225–47. http://dx.doi.org/10.3390/cimb45120638.
Повний текст джерелаWang Erickson, Anna F., Padraig Deighan, Shanshan Chen, Kelsey Barrasso, Cinthia P. Garcia, Santiago Martínez‐Lumbreras, Caterina Alfano, et al. "A novel RNA polymerase‐binding protein that interacts with a sigma‐factor docking site." Molecular Microbiology 105, no. 4 (June 19, 2017): 652–62. http://dx.doi.org/10.1111/mmi.13724.
Повний текст джерелаPérez-Cano, Laura, Brian Jiménez-García, and Juan Fernández-Recio. "A protein-RNA docking benchmark (II): Extended set from experimental and homology modeling data." Proteins: Structure, Function, and Bioinformatics 80, no. 7 (May 8, 2012): 1872–82. http://dx.doi.org/10.1002/prot.24075.
Повний текст джерелаLee, Gwangho, Gun Hyuk Jang, Ho Young Kang, and Giltae Song. "Predicting aptamer sequences that interact with target proteins using an aptamer-protein interaction classifier and a Monte Carlo tree search approach." PLOS ONE 16, no. 6 (June 25, 2021): e0253760. http://dx.doi.org/10.1371/journal.pone.0253760.
Повний текст джерелаRen, Yixin, Sihui Long, and Shuang Cao. "Molecular Docking and Virtual Screening of an Influenza Virus Inhibitor That Disrupts Protein–Protein Interactions." Viruses 13, no. 11 (November 5, 2021): 2229. http://dx.doi.org/10.3390/v13112229.
Повний текст джерелаPraveen, Rajkumar. "Insights from the molecular docking aided interaction analysis of HfQ with small RNAs." Bioinformation 18, no. 4 (April 30, 2022): 425–31. http://dx.doi.org/10.6026/97320630018425.
Повний текст джерелаSharp, Kumar. "Alternatives to Remdesivir: Drug repurposing for inhibition of SARS-CoV2 RNA dependent RNA polymerase." Journal of Pharmacological and Pharmaceutical Research 1, no. 1 (2024): 32. http://dx.doi.org/10.5455/jppr.20240402024133.
Повний текст джерелаAbdelaal Ahmed Mahmoud M. Alkhatip, Ahmed, Michail Georgakis, Lucio R. Montero Valenzuela, Mohamed Hamza, Ehab Farag, Jaqui Hodgkinson, Hisham Hosny, et al. "Metal-Bound Methisazone; Novel Drugs Targeting Prophylaxis and Treatment of SARS-CoV-2, a Molecular Docking Study." International Journal of Molecular Sciences 22, no. 6 (March 15, 2021): 2977. http://dx.doi.org/10.3390/ijms22062977.
Повний текст джерелаIvan, Jeremias, Rizky Nurdiansyah, and Arli Aditya Parikesit. "Computational modeling of AGO-mediated molecular inhibition of ARF6 by miR-145." Indonesian Journal of Biotechnology 25, no. 2 (December 2, 2020): 102. http://dx.doi.org/10.22146/ijbiotech.55631.
Повний текст джерелаRehman, Muhammad Fayyaz ur, Shahzaib Akhter, Aima Iram Batool, Zeliha Selamoglu, Mustafa Sevindik, Rida Eman, Muhammad Mustaqeem, et al. "Effectiveness of Natural Antioxidants against SARS-CoV-2? Insights from the In-Silico World." Antibiotics 10, no. 8 (August 20, 2021): 1011. http://dx.doi.org/10.3390/antibiotics10081011.
Повний текст джерелаSantiago-Frangos, Andrew, Kathrin S. Fröhlich, Jeliazko R. Jeliazkov, Ewelina M. Małecka, Giada Marino, Jeffrey J. Gray, Ben F. Luisi, Sarah A. Woodson, and Steven W. Hardwick. "Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation." Proceedings of the National Academy of Sciences 116, no. 22 (May 10, 2019): 10978–87. http://dx.doi.org/10.1073/pnas.1814428116.
Повний текст джерелаPrabahar, Archana, Subashini Swaminathan, Arul Loganathan, and Ramalingam Jegadeesan. "Identification of Novel Inhibitors for Tobacco Mosaic Virus Infection in Solanaceae Plants." Advances in Bioinformatics 2015 (October 18, 2015): 1–9. http://dx.doi.org/10.1155/2015/198214.
Повний текст джерелаSari, Dewi Ratih Tirto, Heny Yusuf, Laily Sifaiyah, Nur Dina Camelia, and Yohanes Bare. "Kajian Farmakoinformatika Senyawa Brazilin dan 3-O-Methyl Brazilin Caesalpinia sappan Sebagai Terapi Demam Berdarah Dengue." al-Kimiya 9, no. 1 (July 1, 2022): 19–25. http://dx.doi.org/10.15575/ak.v9i1.17613.
Повний текст джерелаAlhossary, Amr, Yaw Awuni, Chee Keong Kwoh, and Yuguang Mu. "Proposing drug fragments for dengue virus NS5 protein." Journal of Bioinformatics and Computational Biology 16, no. 03 (June 2018): 1840017. http://dx.doi.org/10.1142/s0219720018400176.
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