Статті в журналах з теми "Quantitative proteomics data"
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Beynon, Rob, Simon Hubbard, and Andy Jones. "Quantitative proteomics and data analysis." Biochemist 34, no. 1 (February 1, 2012): 61–62. http://dx.doi.org/10.1042/bio03401061.
Повний текст джерелаHandler, David C. L., Flora Cheng, Abdulrahman M. Shathili, and Paul A. Haynes. "PeptideWitch–A Software Package to Produce High-Stringency Proteomics Data Visualizations from Label-Free Shotgun Proteomics Data." Proteomes 8, no. 3 (August 21, 2020): 21. http://dx.doi.org/10.3390/proteomes8030021.
Повний текст джерелаHeld, Jason M., Birgit Schilling, Alexandria K. D'Souza, Tara Srinivasan, Jessica B. Behring, Dylan J. Sorensen, Christopher C. Benz, and Bradford W. Gibson. "Label-Free Quantitation and Mapping of the ErbB2 Tumor Receptor by Multiple Protease Digestion with Data-Dependent (MS1) and Data-Independent (MS2) Acquisitions." International Journal of Proteomics 2013 (April 4, 2013): 1–11. http://dx.doi.org/10.1155/2013/791985.
Повний текст джерелаMontaño-Gutierrez, Luis F., Shinya Ohta, Georg Kustatscher, William C. Earnshaw, and Juri Rappsilber. "Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data." Molecular Biology of the Cell 28, no. 5 (March 2017): 673–80. http://dx.doi.org/10.1091/mbc.e16-06-0370.
Повний текст джерелаKraus, Milena, Mariet Mathew Stephen, and Matthieu-P. Schapranow. "Eatomics: Shiny Exploration of Quantitative Proteomics Data." Journal of Proteome Research 20, no. 1 (September 21, 2020): 1070–78. http://dx.doi.org/10.1021/acs.jproteome.0c00398.
Повний текст джерелаChia-Yu Yen, S. M. Helmike, K. J. Cios, M. B. Perryman, and M. W. Duncan. "Quantitative analysis of proteomics using data mining." IEEE Engineering in Medicine and Biology Magazine 24, no. 3 (May 2005): 67–72. http://dx.doi.org/10.1109/memb.2005.1436462.
Повний текст джерелаHandler, David C., Dana Pascovici, Mehdi Mirzaei, Vivek Gupta, Ghasem Hosseini Salekdeh, and Paul A. Haynes. "The Art of Validating Quantitative Proteomics Data." PROTEOMICS 18, no. 23 (November 25, 2018): 1800222. http://dx.doi.org/10.1002/pmic.201800222.
Повний текст джерелаSantos, Marlon D. M., Amanda Caroline Camillo-Andrade, Louise U. Kurt, Milan A. Clasen, Eduardo Lyra, Fabio C. Gozzo, Michel Batista, et al. "Mixed-Data Acquisition: Next-Generation Quantitative Proteomics Data Acquisition." Journal of Proteomics 222 (June 2020): 103803. http://dx.doi.org/10.1016/j.jprot.2020.103803.
Повний текст джерелаPeng, Gang, Rashaun Wilson, Yishuo Tang, TuKiet T. Lam, Angus C. Nairn, Kenneth Williams, and Hongyu Zhao. "ProteomicsBrowser: MS/proteomics data visualization and investigation." Bioinformatics 35, no. 13 (November 21, 2018): 2313–14. http://dx.doi.org/10.1093/bioinformatics/bty958.
Повний текст джерелаRöst, Hannes L., Lars Malmström, and Ruedi Aebersold. "Reproducible quantitative proteotype data matrices for systems biology." Molecular Biology of the Cell 26, no. 22 (November 5, 2015): 3926–31. http://dx.doi.org/10.1091/mbc.e15-07-0507.
Повний текст джерелаLefkovits, Ivan. "Quantitative Proteomics of Lymphocytes." Comparative and Functional Genomics 4, no. 5 (2003): 531–36. http://dx.doi.org/10.1002/cfg.322.
Повний текст джерелаPursiheimo, Anna, Anni P. Vehmas, Saira Afzal, Tomi Suomi, Thaman Chand, Leena Strauss, Matti Poutanen, Anne Rokka, Garry L. Corthals, and Laura L. Elo. "Optimization of Statistical Methods Impact on Quantitative Proteomics Data." Journal of Proteome Research 14, no. 10 (September 8, 2015): 4118–26. http://dx.doi.org/10.1021/acs.jproteome.5b00183.
Повний текст джерелаColaert, Niklaas, Christophe Van Huele, Sven Degroeve, An Staes, Joël Vandekerckhove, Kris Gevaert, and Lennart Martens. "Combining quantitative proteomics data processing workflows for greater sensitivity." Nature Methods 8, no. 6 (May 8, 2011): 481–83. http://dx.doi.org/10.1038/nmeth.1604.
Повний текст джерелаNoirel, J., S. Y. Ow, G. Sanguinetti, A. Jaramillo, and P. C. Wright. "Automated extraction of meaningful pathways from quantitative proteomics data." Briefings in Functional Genomics and Proteomics 7, no. 2 (February 12, 2008): 136–46. http://dx.doi.org/10.1093/bfgp/eln011.
Повний текст джерелаPavelka, Norman, Marjorie L. Fournier, Selene K. Swanson, Mattia Pelizzola, Paola Ricciardi-Castagnoli, Laurence Florens, and Michael P. Washburn. "Statistical Similarities between Transcriptomics and Quantitative Shotgun Proteomics Data." Molecular & Cellular Proteomics 7, no. 4 (November 19, 2007): 631–44. http://dx.doi.org/10.1074/mcp.m700240-mcp200.
Повний текст джерелаKoh, Hiromi W. L., Hannah L. F. Swa, Damian Fermin, Siok Ghee Ler, Jayantha Gunaratne, and Hyungwon Choi. "EBprot: Statistical analysis of labeling-based quantitative proteomics data." PROTEOMICS 15, no. 15 (May 28, 2015): 2580–91. http://dx.doi.org/10.1002/pmic.201400620.
Повний текст джерелаCox, Jürgen, and Matthias Mann. "Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology." Annual Review of Biochemistry 80, no. 1 (July 7, 2011): 273–99. http://dx.doi.org/10.1146/annurev-biochem-061308-093216.
Повний текст джерелаStorey, Aaron J., Kevin S. Naceanceno, Renny S. Lan, Charity L. Washam, Lisa M. Orr, Samuel G. Mackintosh, Alan J. Tackett, et al. "ProteoViz: a tool for the analysis and interactive visualization of phosphoproteomics data." Molecular Omics 16, no. 4 (2020): 316–26. http://dx.doi.org/10.1039/c9mo00149b.
Повний текст джерелаChen, Chen, Jie Hou, John J. Tanner, and Jianlin Cheng. "Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis." International Journal of Molecular Sciences 21, no. 8 (April 20, 2020): 2873. http://dx.doi.org/10.3390/ijms21082873.
Повний текст джерелаMalmström, Lars, Pontus Nordenfelt, and Johan Malmström. "Business intelligence strategies enables rapid analysis of quantitative proteomics data." journal of Proteome Science and Computational Biology 1, no. 1 (2012): 5. http://dx.doi.org/10.7243/2050-2273-1-5.
Повний текст джерелаSingh, Sukhdeep, Marco Y. Hein, and A. Francis Stewart. "msVolcano: A flexible web application for visualizing quantitative proteomics data." PROTEOMICS 16, no. 18 (September 2016): 2491–94. http://dx.doi.org/10.1002/pmic.201600167.
Повний текст джерелаDudekula, Khadar, and Thierry Le Bihan. "Data from quantitative label free proteomics analysis of rat spleen." Data in Brief 8 (September 2016): 494–500. http://dx.doi.org/10.1016/j.dib.2016.05.058.
Повний текст джерелаMohammed, Yassene, Pallab Bhowmick, Sarah A. Michaud, Albert Sickmann, and Christoph H. Borchers. "Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays." Bioinformatics 37, no. 13 (January 23, 2021): 1900–1908. http://dx.doi.org/10.1093/bioinformatics/btab018.
Повний текст джерелаBreckels, Lisa M., Claire M. Mulvey, Kathryn S. Lilley, and Laurent Gatto. "A Bioconductor workflow for processing and analysing spatial proteomics data." F1000Research 5 (December 28, 2016): 2926. http://dx.doi.org/10.12688/f1000research.10411.1.
Повний текст джерелаBreckels, Lisa M., Claire M. Mulvey, Kathryn S. Lilley, and Laurent Gatto. "A Bioconductor workflow for processing and analysing spatial proteomics data." F1000Research 5 (July 3, 2018): 2926. http://dx.doi.org/10.12688/f1000research.10411.2.
Повний текст джерелаMurugesan, Gavuthami, Lindsay Davidson, Linda Jannetti, Paul R. Crocker, and Bernd Weigle. "Quantitative Proteomics of Polarised Macrophages Derived from Induced Pluripotent Stem Cells." Biomedicines 10, no. 2 (January 23, 2022): 239. http://dx.doi.org/10.3390/biomedicines10020239.
Повний текст джерелаLi, Na, Huanni Li, Lanqin Cao, and Xianquan Zhan. "Quantitative analysis of the mitochondrial proteome in human ovarian carcinomas." Endocrine-Related Cancer 25, no. 10 (October 2018): 909–31. http://dx.doi.org/10.1530/erc-18-0243.
Повний текст джерелаKOLCH, Walter, Harald MISCHAK, and Andrew R. PITT. "The molecular make-up of a tumour: proteomics in cancer research." Clinical Science 108, no. 5 (April 22, 2005): 369–83. http://dx.doi.org/10.1042/cs20050006.
Повний текст джерелаNigjeh, Eslam N., Ru Chen, Randall E. Brand, Gloria M. Petersen, Suresh T. Chari, Priska D. von Haller, Jimmy K. Eng, et al. "Quantitative Proteomics Based on Optimized Data-Independent Acquisition in Plasma Analysis." Journal of Proteome Research 16, no. 2 (January 3, 2017): 665–76. http://dx.doi.org/10.1021/acs.jproteome.6b00727.
Повний текст джерелаLocasale, Jason W., and Alejandro Wolf-Yadlin. "Maximum Entropy Reconstructions of Dynamic Signaling Networks from Quantitative Proteomics Data." PLoS ONE 4, no. 8 (August 26, 2009): e6522. http://dx.doi.org/10.1371/journal.pone.0006522.
Повний текст джерелаSchaab, Christoph, Tamar Geiger, Gabriele Stoehr, Juergen Cox, and Matthias Mann. "Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database." Molecular & Cellular Proteomics 11, no. 3 (February 2, 2012): M111.014068. http://dx.doi.org/10.1074/mcp.m111.014068.
Повний текст джерелаChang, Cheng, Mansheng Li, Chaoping Guo, Yuqing Ding, Kaikun Xu, Mingfei Han, Fuchu He, and Yunping Zhu. "PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis." Bioinformatics 35, no. 5 (August 23, 2018): 898–900. http://dx.doi.org/10.1093/bioinformatics/bty727.
Повний текст джерелаde Groot, Joost C. W., Mark W. E. J. Fiers, Roeland C. H. J. van Ham, and Antoine H. P. America. "Post alignment clustering procedure for comparative quantitative proteomics LC-MS Data." PROTEOMICS 8, no. 1 (January 2008): 32–36. http://dx.doi.org/10.1002/pmic.200700707.
Повний текст джерелаTsai, Chia-Feng, Rui Zhao, Sarah M. Williams, Ronald J. Moore, Kendall Schultz, William B. Chrisler, Ljiljana Pasa-Tolic, et al. "An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics." Molecular & Cellular Proteomics 19, no. 5 (March 3, 2020): 828–38. http://dx.doi.org/10.1074/mcp.ra119.001857.
Повний текст джерелаZhang, Yin, Chun-Yuan Li, Wei Ge, and Yi Xiao. "Exploration of the Key Proteins in the Normal-Adenoma-Carcinoma Sequence of Colorectal Cancer Evolution Using In-Depth Quantitative Proteomics." Journal of Oncology 2021 (June 11, 2021): 1–19. http://dx.doi.org/10.1155/2021/5570058.
Повний текст джерелаTang, Jing, Yang Zhang, Jianbo Fu, Yunxia Wang, Yi Li, Qingxia Yang, Lixia Yao, Weiwei Xue, and Feng Zhu. "Computational Advances in the Label-free Quantification of Cancer Proteomics Data." Current Pharmaceutical Design 24, no. 32 (January 15, 2019): 3842–58. http://dx.doi.org/10.2174/1381612824666181102125638.
Повний текст джерелаWang, Shisheng, Wenxue Li, Liqiang Hu, Jingqiu Cheng, Hao Yang, and Yansheng Liu. "NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses." Nucleic Acids Research 48, no. 14 (June 11, 2020): e83-e83. http://dx.doi.org/10.1093/nar/gkaa498.
Повний текст джерелаDatta, Keshava K., Parthiban Periasamy, Sonali V. Mohan, Rebekah Ziegman, and Harsha Gowda. "Temporal Quantitative Proteomics Reveals Proteomic and Phosphoproteomic Alterations Associated with Adaptive Response to Hypoxia in Melanoma Cells." Cancers 13, no. 9 (April 30, 2021): 2175. http://dx.doi.org/10.3390/cancers13092175.
Повний текст джерелаCordido, Adrian, Marta Vizoso-Gonzalez, Laura Nuñez-Gonzalez, Alberto Molares-Vila, Maria del Pilar Chantada-Vazquez, Susana B. Bravo, and Miguel A. Garcia-Gonzalez. "Quantitative Proteomic Study Unmasks Fibrinogen Pathway in Polycystic Liver Disease." Biomedicines 10, no. 2 (January 27, 2022): 290. http://dx.doi.org/10.3390/biomedicines10020290.
Повний текст джерелаDoytchinova, Irini A., and Paul Taylor. "Proteomics in Vaccinology and Immunobiology: An Informatics Perspective of the Immunone." Journal of Biomedicine and Biotechnology 2003, no. 5 (2003): 267–90. http://dx.doi.org/10.1155/s1110724303209232.
Повний текст джерелаArnold, Georg J., and T. Frohlich. "Dynamic proteome signatures in gametes, embryos and their maternal environment." Reproduction, Fertility and Development 23, no. 1 (2011): 81. http://dx.doi.org/10.1071/rd10223.
Повний текст джерелаKuzniar, Arnold, and Roland Kanaar. "PIQMIe: a web server for semi-quantitative proteomics data management and analysis." Nucleic Acids Research 42, W1 (May 26, 2014): W100—W106. http://dx.doi.org/10.1093/nar/gku478.
Повний текст джерелаMacCoss, Michael J., Christine C. Wu, Hongbin Liu, Rovshan Sadygov, and John R. Yates. "A Correlation Algorithm for the Automated Quantitative Analysis of Shotgun Proteomics Data." Analytical Chemistry 75, no. 24 (December 2003): 6912–21. http://dx.doi.org/10.1021/ac034790h.
Повний текст джерелаTing, Lily, Mark J. Cowley, Seah Lay Hoon, Michael Guilhaus, Mark J. Raftery, and Ricardo Cavicchioli. "Normalization and Statistical Analysis of Quantitative Proteomics Data Generated by Metabolic Labeling." Molecular & Cellular Proteomics 8, no. 10 (July 14, 2009): 2227–42. http://dx.doi.org/10.1074/mcp.m800462-mcp200.
Повний текст джерелаWalzer, Mathias, Da Qi, Gerhard Mayer, Julian Uszkoreit, Martin Eisenacher, Timo Sachsenberg, Faviel F. Gonzalez-Galarza, et al. "The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics." Molecular & Cellular Proteomics 12, no. 8 (April 18, 2013): 2332–40. http://dx.doi.org/10.1074/mcp.o113.028506.
Повний текст джерелаTeo, Guoshou, Sinae Kim, Chih-Chiang Tsou, Ben Collins, Anne-Claude Gingras, Alexey I. Nesvizhskii, and Hyungwon Choi. "mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry." Journal of Proteomics 129 (November 2015): 108–20. http://dx.doi.org/10.1016/j.jprot.2015.09.013.
Повний текст джерелаBhawal, Ruchika, Ann L. Oberg, Sheng Zhang, and Manish Kohli. "Challenges and Opportunities in Clinical Applications of Blood-Based Proteomics in Cancer." Cancers 12, no. 9 (August 27, 2020): 2428. http://dx.doi.org/10.3390/cancers12092428.
Повний текст джерелаPoulsen, T. B. G., J. S. Andersen, M. K. Kristiansen, S. Rasmusen, L. Arent-Nielsen, C. H. Nielsen, and A. Stensballe. "AB1254 PHENOTYPING OF MULTIPLE BIOFLUIDS FOR LIQUID BIOMARKERS FOR DIAGNOSTICS AND PERSONALIZED MEDICINE OF RHEUMATOID ARTHRITIS, SPONDYLOARTHRITIS AND OSTEOARTHRITIS." Annals of the Rheumatic Diseases 79, Suppl 1 (June 2020): 1918.1–1919. http://dx.doi.org/10.1136/annrheumdis-2020-eular.5949.
Повний текст джерелаRaffel, Simon, Daniel Klimmeck, Mattia Falcone, Aykut Demir, Alireza Pouya, Petra Zeisberger, Christoph Lutz, et al. "Quantitative proteomics reveals specific metabolic features of acute myeloid leukemia stem cells." Blood 136, no. 13 (September 24, 2020): 1507–19. http://dx.doi.org/10.1182/blood.2019003654.
Повний текст джерелаWu, Jinlu, Qingsong Lin, Teck Kwang Lim, Tiefei Liu, and Choy-Leong Hew. "White Spot Syndrome Virus Proteins and Differentially Expressed Host Proteins Identified in Shrimp Epithelium by Shotgun Proteomics and Cleavable Isotope-Coded Affinity Tag." Journal of Virology 81, no. 21 (August 22, 2007): 11681–89. http://dx.doi.org/10.1128/jvi.01006-07.
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