Статті в журналах з теми "Protein Structure Networks (PSNs)"
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Duong, Vy T., Elizabeth M. Diessner, Gianmarc Grazioli, Rachel W. Martin, and Carter T. Butts. "Neural Upscaling from Residue-Level Protein Structure Networks to Atomistic Structures." Biomolecules 11, no. 12 (November 30, 2021): 1788. http://dx.doi.org/10.3390/biom11121788.
Повний текст джерелаNewaz, Khalique, Mahboobeh Ghalehnovi, Arash Rahnama, Panos J. Antsaklis, and Tijana Milenković. "Network-based protein structural classification." Royal Society Open Science 7, no. 6 (June 2020): 191461. http://dx.doi.org/10.1098/rsos.191461.
Повний текст джерелаYan, Wenying, Daqing Zhang, Chen Shen, Zhongjie Liang, and Guang Hu. "Recent Advances on the Network Models in Target-based Drug Discovery." Current Topics in Medicinal Chemistry 18, no. 13 (October 4, 2018): 1031–43. http://dx.doi.org/10.2174/1568026618666180719152258.
Повний текст джерелаAydınkal, Rasim Murat, Onur Serçinoğlu, and Pemra Ozbek. "ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism." Nucleic Acids Research 47, W1 (May 22, 2019): W471—W476. http://dx.doi.org/10.1093/nar/gkz390.
Повний текст джерелаFelline, Angelo, Michele Seeber, and Francesca Fanelli. "webPSN v2.0: a webserver to infer fingerprints of structural communication in biomacromolecules." Nucleic Acids Research 48, W1 (May 19, 2020): W94—W103. http://dx.doi.org/10.1093/nar/gkaa397.
Повний текст джерелаHa, Tae Won, Ji Hun Jeong, HyeonSeok Shin, Hyun Kyu Kim, Jeong Suk Im, Byung Hoo Song, Jacob Hanna, et al. "Characterization of Endoplasmic Reticulum (ER) in Human Pluripotent Stem Cells Revealed Increased Susceptibility to Cell Death upon ER Stress." Cells 9, no. 5 (April 26, 2020): 1078. http://dx.doi.org/10.3390/cells9051078.
Повний текст джерелаPuspitasari, Ira, Shukor Sanim Mohd Fauzi, and Cheng-Yuan Ho. "Factors Driving Users’ Engagement in Patient Social Network Systems." Informatics 8, no. 1 (February 9, 2021): 8. http://dx.doi.org/10.3390/informatics8010008.
Повний текст джерелаDeng, Yu Qiao, and Ge Song. "A Verifiable Visual Cryptography Scheme Using Neural Networks." Advanced Materials Research 756-759 (September 2013): 1361–65. http://dx.doi.org/10.4028/www.scientific.net/amr.756-759.1361.
Повний текст джерелаGreene, L. H. "Protein structure networks." Briefings in Functional Genomics 11, no. 6 (October 4, 2012): 469–78. http://dx.doi.org/10.1093/bfgp/els039.
Повний текст джерелаHase, T., Y. Suzuki, S. Ogisima, and H. Tanaka. "Hierarchical Structure of Protein Protein Interaction Networks." Seibutsu Butsuri 43, supplement (2003): S244. http://dx.doi.org/10.2142/biophys.43.s244_1.
Повний текст джерелаThomas, A., R. Cannings, N. A. M. Monk, and C. Cannings. "On the structure of protein–protein interaction networks." Biochemical Society Transactions 31, no. 6 (December 1, 2003): 1491–96. http://dx.doi.org/10.1042/bst0311491.
Повний текст джерелаCotterill, RMJ. "Neural networks applied to protein structure." Journal de Chimie Physique 88 (1991): 2729. http://dx.doi.org/10.1051/jcp/1991882729.
Повний текст джерелаVijayabaskar, M. S., and Saraswathi Vishveshwara. "Interaction Energy Based Protein Structure Networks." Biophysical Journal 99, no. 11 (December 2010): 3704–15. http://dx.doi.org/10.1016/j.bpj.2010.08.079.
Повний текст джерелаNaveed, Hammad, and Jingdong J. Han. "Structure-based protein-protein interaction networks and drug design." Quantitative Biology 1, no. 3 (August 31, 2013): 183–91. http://dx.doi.org/10.1007/s40484-013-0018-y.
Повний текст джерелаHales, David, and Stefano Arteconi. "Motifs in evolving cooperative networks look like protein structure networks." Networks & Heterogeneous Media 3, no. 2 (2008): 239–49. http://dx.doi.org/10.3934/nhm.2008.3.239.
Повний текст джерелаHead-Gordon, Teresa, and Frank H. Stillinger. "Optimal neural networks for protein-structure prediction." Physical Review E 48, no. 2 (August 1, 1993): 1502–15. http://dx.doi.org/10.1103/physreve.48.1502.
Повний текст джерелаMilenković, Tijana, Ioannis Filippis, Michael Lappe, and Nataša Pržulj. "Optimized Null Model for Protein Structure Networks." PLoS ONE 4, no. 6 (June 26, 2009): e5967. http://dx.doi.org/10.1371/journal.pone.0005967.
Повний текст джерелаJohnson, Margaret E., and Gerhard Hummer. "Refining Protein Interaction Networks with Protein Structure and Kinetic Modeling." Biophysical Journal 102, no. 3 (January 2012): 226a. http://dx.doi.org/10.1016/j.bpj.2011.11.1240.
Повний текст джерелаLyu, Guizhen, Dongbing Li, Hui Xiong, Langtao Xiao, Jianhua Tong, Chanjuan Ning, Ping Wang, and Shaoshan Li. "Quantitative Proteomic Analyses Identify STO/BBX24 -Related Proteins Induced by UV-B." International Journal of Molecular Sciences 21, no. 7 (April 3, 2020): 2496. http://dx.doi.org/10.3390/ijms21072496.
Повний текст джерелаHu, Ke, Jing-Bo Hu, Liang Tang, Ju Xiang, Jin-Long Ma, Yuan-Yuan Gao, Hui-Jia Li, and Yan Zhang. "Predicting disease-related genes by path structure and community structure in protein–protein networks." Journal of Statistical Mechanics: Theory and Experiment 2018, no. 10 (October 26, 2018): 100001. http://dx.doi.org/10.1088/1742-5468/aae02b.
Повний текст джерелаRost, Burkhard, and Chris Sander. "EXERCISING MULTI-LAYERED NETWORKS ON PROTEIN SECONDARY STRUCTURE." International Journal of Neural Systems 03, supp01 (January 1992): 209–20. http://dx.doi.org/10.1142/s0129065792000541.
Повний текст джерелаBerenstein, Ariel José, Janet Piñero, Laura Inés Furlong, and Ariel Chernomoretz. "Mining the Modular Structure of Protein Interaction Networks." PLOS ONE 10, no. 4 (April 9, 2015): e0122477. http://dx.doi.org/10.1371/journal.pone.0122477.
Повний текст джерелаLu, Hui-Chun, Arianna Fornili, and Franca Fraternali. "Protein–protein interaction networks studies and importance of 3D structure knowledge." Expert Review of Proteomics 10, no. 6 (December 2013): 511–20. http://dx.doi.org/10.1586/14789450.2013.856764.
Повний текст джерелаFang, Yi, Mengtian Sun, Guoxian Dai, and Karthik Ramain. "The Intrinsic Geometric Structure of Protein-Protein Interaction Networks for Protein Interaction Prediction." IEEE/ACM Transactions on Computational Biology and Bioinformatics 13, no. 1 (January 1, 2016): 76–85. http://dx.doi.org/10.1109/tcbb.2015.2456876.
Повний текст джерелаLaursen, Louise, Johanna Kliche, Stefano Gianni, and Per Jemth. "Supertertiary protein structure affects an allosteric network." Proceedings of the National Academy of Sciences 117, no. 39 (September 14, 2020): 24294–304. http://dx.doi.org/10.1073/pnas.2007201117.
Повний текст джерелаChandni, Khatri, Prof Mrudang Pandya, and Dr Sunil Jardosh. "Deep Learning Approaches for Protein Structure Prediction." International Journal of Engineering & Technology 7, no. 4.5 (September 22, 2018): 168. http://dx.doi.org/10.14419/ijet.v7i4.5.20037.
Повний текст джерелаLappe, M., and L. Holm. "Algorithms for protein interaction networks." Biochemical Society Transactions 33, no. 3 (June 1, 2005): 530–34. http://dx.doi.org/10.1042/bst0330530.
Повний текст джерелаStrosberg, A. D., and C. Nahmias. "G-protein-coupled receptor signalling through protein networks." Biochemical Society Transactions 35, no. 1 (January 22, 2007): 23–27. http://dx.doi.org/10.1042/bst0350023.
Повний текст джерелаSun, Dengdi, and Maolin Hu. "Predicting Protein Function Based on the Topological Structure of Protein Interaction Networks." Journal of Computational and Theoretical Nanoscience 4, no. 7 (November 1, 2007): 1337–43. http://dx.doi.org/10.1166/jctn.2007.2421.
Повний текст джерелаEma, Romana Rahman, Akhi Khatun, Md Alam Hossain, Mostafijur Rahman Akhond, Nazmul Hossain, and Md Yasir Arafat. "Protein Secondary Structure Prediction using Hybrid Recurrent Neural Networks." Journal of Computer Science 18, no. 7 (July 1, 2022): 599–611. http://dx.doi.org/10.3844/jcssp.2022.599.611.
Повний текст джерелаReczko, M. "Protein Secondary Structure Prediction with Partially Recurrent Neural Networks." SAR and QSAR in Environmental Research 1, no. 2-3 (August 1993): 153–59. http://dx.doi.org/10.1080/10629369308028826.
Повний текст джерелаWagner, Andreas. "How the global structure of protein interaction networks evolves." Proceedings of the Royal Society of London. Series B: Biological Sciences 270, no. 1514 (March 7, 2003): 457–66. http://dx.doi.org/10.1098/rspb.2002.2269.
Повний текст джерелаMishra, Awdhesh Kumar, Swati Puranik, and Manoj Prasad. "Structure and regulatory networks of WD40 protein in plants." Journal of Plant Biochemistry and Biotechnology 21, S1 (August 19, 2012): 32–39. http://dx.doi.org/10.1007/s13562-012-0134-1.
Повний текст джерелаZhou, Shusen, Hailin Zou, Chanjuan Liu, Mujun Zang, and Tong Liu. "Combining Deep Neural Networks for Protein Secondary Structure Prediction." IEEE Access 8 (2020): 84362–70. http://dx.doi.org/10.1109/access.2020.2992084.
Повний текст джерелаWood, M. J., and J. D. Hirst. "Predicting protein secondary structure by cascade-correlation neural networks." Bioinformatics 20, no. 3 (January 22, 2004): 419–20. http://dx.doi.org/10.1093/bioinformatics/btg423.
Повний текст джерелаGrazioli, Gianmarc, Vy Duong, Elizabeth Diessner, Rachel W. Martin, and Carter T. Butts. "Reconstructing atomistic structures from residue-level protein structure networks using artificial neural networks." Biophysical Journal 121, no. 3 (February 2022): 133a. http://dx.doi.org/10.1016/j.bpj.2021.11.2046.
Повний текст джерелаNoor, Amina, Erchin Serpedin, Mohamed Nounou, Hazem Nounou, Nady Mohamed, and Lotfi Chouchane. "An Overview of the Statistical Methods Used for Inferring Gene Regulatory Networks and Protein-Protein Interaction Networks." Advances in Bioinformatics 2013 (February 21, 2013): 1–12. http://dx.doi.org/10.1155/2013/953814.
Повний текст джерелаLEE, PO-HAN, CHIEN-HUNG HUANG, JYWE-FEI FANG, HSIANG-CHUAN LIU, and KA-LOK NG. "HIERARCHICAL AND TOPOLOGICAL STUDY OF THE PROTEIN–PROTEIN INTERACTION NETWORKS." Advances in Complex Systems 08, no. 04 (December 2005): 383–97. http://dx.doi.org/10.1142/s0219525905000531.
Повний текст джерелаSora, Valentina, Dionisio Sanchez, and Elena Papaleo. "Bcl-xL Dynamics under the Lens of Protein Structure Networks." Journal of Physical Chemistry B 125, no. 17 (April 13, 2021): 4308–20. http://dx.doi.org/10.1021/acs.jpcb.0c11562.
Повний текст джерелаIbrahim, Ali Abdulhafidh, and Ibrahim Sabah Yasseen. "Using Neural Networks to Predict Secondary Structure for Protein Folding." Journal of Computer and Communications 05, no. 01 (2017): 1–8. http://dx.doi.org/10.4236/jcc.2017.51001.
Повний текст джерелаJinmiao Chen and N. S. Chaudhari. "Cascaded Bidirectional Recurrent Neural Networks for Protein Secondary Structure Prediction." IEEE/ACM Transactions on Computational Biology and Bioinformatics 4, no. 4 (October 2007): 572–82. http://dx.doi.org/10.1109/tcbb.2007.1055.
Повний текст джерелаYan, Wenying, Maomin Sun, Guang Hu, Jianhong Zhou, Wenyu Zhang, Jiajia Chen, Biao Chen, and Bairong Shen. "Amino acid contact energy networks impact protein structure and evolution." Journal of Theoretical Biology 355 (August 2014): 95–104. http://dx.doi.org/10.1016/j.jtbi.2014.03.032.
Повний текст джерелаLiebman, M. "Neural networks and protein structure-function analysis on the macintosh." Journal of Molecular Graphics 9, no. 1 (March 1991): 42. http://dx.doi.org/10.1016/0263-7855(91)80037-z.
Повний текст джерелаConover, Matthew, Max Staples, Dong Si, Miao Sun, and Renzhi Cao. "AngularQA: Protein Model Quality Assessment with LSTM Networks." Computational and Mathematical Biophysics 7, no. 1 (May 29, 2019): 1–9. http://dx.doi.org/10.1515/cmb-2019-0001.
Повний текст джерелаPržulj, Nataša, and Desmond J. Higham. "Modelling protein–protein interaction networks via a stickiness index." Journal of The Royal Society Interface 3, no. 10 (August 22, 2006): 711–16. http://dx.doi.org/10.1098/rsif.2006.0147.
Повний текст джерелаBaker, Charles, Sheelagh Carpendale, Przemyslaw Prusinkiewicz, and Michael Surette. "GeneVis: Simulation and Visualization of Genetic Networks." Information Visualization 2, no. 4 (December 2003): 201–17. http://dx.doi.org/10.1057/palgrave.ivs.9500055.
Повний текст джерелаSenior, Andrew W., Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, et al. "Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13)." Proteins: Structure, Function, and Bioinformatics 87, no. 12 (November 11, 2019): 1141–48. http://dx.doi.org/10.1002/prot.25834.
Повний текст джерелаVISHVESHWARA, SARASWATHI, K. V. BRINDA, and N. KANNAN. "PROTEIN STRUCTURE: INSIGHTS FROM GRAPH THEORY." Journal of Theoretical and Computational Chemistry 01, no. 01 (July 2002): 187–211. http://dx.doi.org/10.1142/s0219633602000117.
Повний текст джерелаLiu, Peng, Lei Yang, Daming Shi, and Xianglong Tang. "Prediction of Protein-Protein Interactions Related to Protein Complexes Based on Protein Interaction Networks." BioMed Research International 2015 (2015): 1–9. http://dx.doi.org/10.1155/2015/259157.
Повний текст джерелаGosline, John M. "Structure and Mechanical Properties of Rubberlike Proteins in Animals." Rubber Chemistry and Technology 60, no. 3 (July 1, 1987): 417–38. http://dx.doi.org/10.5254/1.3536137.
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