Статті в журналах з теми "Protein Structure Networks (PSN)"
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Felline, Angelo, Michele Seeber, and Francesca Fanelli. "webPSN v2.0: a webserver to infer fingerprints of structural communication in biomacromolecules." Nucleic Acids Research 48, W1 (May 19, 2020): W94—W103. http://dx.doi.org/10.1093/nar/gkaa397.
Повний текст джерелаDuong, Vy T., Elizabeth M. Diessner, Gianmarc Grazioli, Rachel W. Martin, and Carter T. Butts. "Neural Upscaling from Residue-Level Protein Structure Networks to Atomistic Structures." Biomolecules 11, no. 12 (November 30, 2021): 1788. http://dx.doi.org/10.3390/biom11121788.
Повний текст джерелаAydınkal, Rasim Murat, Onur Serçinoğlu, and Pemra Ozbek. "ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism." Nucleic Acids Research 47, W1 (May 22, 2019): W471—W476. http://dx.doi.org/10.1093/nar/gkz390.
Повний текст джерелаNewaz, Khalique, Mahboobeh Ghalehnovi, Arash Rahnama, Panos J. Antsaklis, and Tijana Milenković. "Network-based protein structural classification." Royal Society Open Science 7, no. 6 (June 2020): 191461. http://dx.doi.org/10.1098/rsos.191461.
Повний текст джерелаFanelli, Francesca, Angelo Felline, Francesco Raimondi, and Michele Seeber. "Structure network analysis to gain insights into GPCR function." Biochemical Society Transactions 44, no. 2 (April 11, 2016): 613–18. http://dx.doi.org/10.1042/bst20150283.
Повний текст джерелаChasapis, Christos T., and Alexios Vlamis-Gardikas. "Probing Conformational Dynamics by Protein Contact Networks: Comparison with NMR Relaxation Studies and Molecular Dynamics Simulations." Biophysica 1, no. 2 (April 8, 2021): 157–67. http://dx.doi.org/10.3390/biophysica1020012.
Повний текст джерелаMahmud, Khandakar Abu Hasan Al, Fuad Hasan, Md Ishak Khan, and Ashfaq Adnan. "Shock-Induced Damage Mechanism of Perineuronal Nets." Biomolecules 12, no. 1 (December 22, 2021): 10. http://dx.doi.org/10.3390/biom12010010.
Повний текст джерелаLubovac, Zelmina. "Investigating Topological and Functional Features of Multimodular Proteins." Journal of Biomedicine and Biotechnology 2009 (2009): 1–10. http://dx.doi.org/10.1155/2009/472415.
Повний текст джерелаDrago, Valentina, Luisa Di Paola, Claire Lesieur, Renato Bernardini, Claudio Bucolo, and Chiara Bianca Maria Platania. "In-Silico Characterization of von Willebrand Factor Bound to FVIII." Applied Sciences 12, no. 15 (August 4, 2022): 7855. http://dx.doi.org/10.3390/app12157855.
Повний текст джерелаDANICH, V. M., and S. M. SHEVCHENKO. "FORMALIZATION OF THE CONCEPT OF SOCIAL SPACE OF THE SUBJECT THROUGH THE CONCEPT OF SOCIAL NETWORKS." REVIEW OF TRANSPORT ECONOMICS AND MANAGEMENT, no. 4(20) (November 30, 2020): 182–94. http://dx.doi.org/10.15802/rtem2020/228878.
Повний текст джерелаHu, Guang, Luisa Di Paola, Zhongjie Liang, and Alessandro Giuliani. "Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case." BioMed Research International 2017 (2017): 1–15. http://dx.doi.org/10.1155/2017/2483264.
Повний текст джерелаLukinova, Nina I., Victoria V. Roussakova, and Mark E. Fortini. "Genetic Characterization of Cytological Region 77A–D Harboring the Presenilin Gene of Drosophila melanogaster." Genetics 153, no. 4 (December 1, 1999): 1789–97. http://dx.doi.org/10.1093/genetics/153.4.1789.
Повний текст джерелаGreene, L. H. "Protein structure networks." Briefings in Functional Genomics 11, no. 6 (October 4, 2012): 469–78. http://dx.doi.org/10.1093/bfgp/els039.
Повний текст джерелаDeng, Yu Qiao, and Ge Song. "A Verifiable Visual Cryptography Scheme Using Neural Networks." Advanced Materials Research 756-759 (September 2013): 1361–65. http://dx.doi.org/10.4028/www.scientific.net/amr.756-759.1361.
Повний текст джерелаWu, Xiao-Tong, Zhu-Pei Xiong, Kun-Xiang Chen, Guo-Rong Zhao, Ke-Ru Feng, Xiu-Hua Li, Xi-Ran Li, et al. "Genome-Wide Identification and Transcriptional Expression Profiles of PP2C in the Barley (Hordeum vulgare L.) Pan-Genome." Genes 13, no. 5 (May 7, 2022): 834. http://dx.doi.org/10.3390/genes13050834.
Повний текст джерелаHase, T., Y. Suzuki, S. Ogisima, and H. Tanaka. "Hierarchical Structure of Protein Protein Interaction Networks." Seibutsu Butsuri 43, supplement (2003): S244. http://dx.doi.org/10.2142/biophys.43.s244_1.
Повний текст джерелаHaryanto, Toto, Rizky Kurniawan, Sony Muhammad, Aziz Kustiyo, and Endang Purnama Giri. "Ekstraksi Fitur Rantai Markov untuk Klasifikasi Famili Protein." Jurnal Ilmiah SINUS 21, no. 2 (July 10, 2023): 79. http://dx.doi.org/10.30646/sinus.v21i2.748.
Повний текст джерелаThomas, A., R. Cannings, N. A. M. Monk, and C. Cannings. "On the structure of protein–protein interaction networks." Biochemical Society Transactions 31, no. 6 (December 1, 2003): 1491–96. http://dx.doi.org/10.1042/bst0311491.
Повний текст джерелаCotterill, RMJ. "Neural networks applied to protein structure." Journal de Chimie Physique 88 (1991): 2729. http://dx.doi.org/10.1051/jcp/1991882729.
Повний текст джерелаVijayabaskar, M. S., and Saraswathi Vishveshwara. "Interaction Energy Based Protein Structure Networks." Biophysical Journal 99, no. 11 (December 2010): 3704–15. http://dx.doi.org/10.1016/j.bpj.2010.08.079.
Повний текст джерелаNaveed, Hammad, and Jingdong J. Han. "Structure-based protein-protein interaction networks and drug design." Quantitative Biology 1, no. 3 (August 31, 2013): 183–91. http://dx.doi.org/10.1007/s40484-013-0018-y.
Повний текст джерелаHales, David, and Stefano Arteconi. "Motifs in evolving cooperative networks look like protein structure networks." Networks & Heterogeneous Media 3, no. 2 (2008): 239–49. http://dx.doi.org/10.3934/nhm.2008.3.239.
Повний текст джерелаHead-Gordon, Teresa, and Frank H. Stillinger. "Optimal neural networks for protein-structure prediction." Physical Review E 48, no. 2 (August 1, 1993): 1502–15. http://dx.doi.org/10.1103/physreve.48.1502.
Повний текст джерелаMilenković, Tijana, Ioannis Filippis, Michael Lappe, and Nataša Pržulj. "Optimized Null Model for Protein Structure Networks." PLoS ONE 4, no. 6 (June 26, 2009): e5967. http://dx.doi.org/10.1371/journal.pone.0005967.
Повний текст джерелаJohnson, Margaret E., and Gerhard Hummer. "Refining Protein Interaction Networks with Protein Structure and Kinetic Modeling." Biophysical Journal 102, no. 3 (January 2012): 226a. http://dx.doi.org/10.1016/j.bpj.2011.11.1240.
Повний текст джерелаHu, Ke, Jing-Bo Hu, Liang Tang, Ju Xiang, Jin-Long Ma, Yuan-Yuan Gao, Hui-Jia Li, and Yan Zhang. "Predicting disease-related genes by path structure and community structure in protein–protein networks." Journal of Statistical Mechanics: Theory and Experiment 2018, no. 10 (October 26, 2018): 100001. http://dx.doi.org/10.1088/1742-5468/aae02b.
Повний текст джерелаRost, Burkhard, and Chris Sander. "EXERCISING MULTI-LAYERED NETWORKS ON PROTEIN SECONDARY STRUCTURE." International Journal of Neural Systems 03, supp01 (January 1992): 209–20. http://dx.doi.org/10.1142/s0129065792000541.
Повний текст джерелаBerenstein, Ariel José, Janet Piñero, Laura Inés Furlong, and Ariel Chernomoretz. "Mining the Modular Structure of Protein Interaction Networks." PLOS ONE 10, no. 4 (April 9, 2015): e0122477. http://dx.doi.org/10.1371/journal.pone.0122477.
Повний текст джерелаLu, Hui-Chun, Arianna Fornili, and Franca Fraternali. "Protein–protein interaction networks studies and importance of 3D structure knowledge." Expert Review of Proteomics 10, no. 6 (December 2013): 511–20. http://dx.doi.org/10.1586/14789450.2013.856764.
Повний текст джерелаKulkarni, Prakash, Vitor B. P. Leite, Susmita Roy, Supriyo Bhattacharyya, Atish Mohanty, Srisairam Achuthan, Divyoj Singh, et al. "Intrinsically disordered proteins: Ensembles at the limits of Anfinsen's dogma." Biophysics Reviews 3, no. 1 (March 2022): 011306. http://dx.doi.org/10.1063/5.0080512.
Повний текст джерелаFang, Yi, Mengtian Sun, Guoxian Dai, and Karthik Ramain. "The Intrinsic Geometric Structure of Protein-Protein Interaction Networks for Protein Interaction Prediction." IEEE/ACM Transactions on Computational Biology and Bioinformatics 13, no. 1 (January 1, 2016): 76–85. http://dx.doi.org/10.1109/tcbb.2015.2456876.
Повний текст джерелаLaursen, Louise, Johanna Kliche, Stefano Gianni, and Per Jemth. "Supertertiary protein structure affects an allosteric network." Proceedings of the National Academy of Sciences 117, no. 39 (September 14, 2020): 24294–304. http://dx.doi.org/10.1073/pnas.2007201117.
Повний текст джерелаChandni, Khatri, Prof Mrudang Pandya, and Dr Sunil Jardosh. "Deep Learning Approaches for Protein Structure Prediction." International Journal of Engineering & Technology 7, no. 4.5 (September 22, 2018): 168. http://dx.doi.org/10.14419/ijet.v7i4.5.20037.
Повний текст джерелаLappe, M., and L. Holm. "Algorithms for protein interaction networks." Biochemical Society Transactions 33, no. 3 (June 1, 2005): 530–34. http://dx.doi.org/10.1042/bst0330530.
Повний текст джерелаStrosberg, A. D., and C. Nahmias. "G-protein-coupled receptor signalling through protein networks." Biochemical Society Transactions 35, no. 1 (January 22, 2007): 23–27. http://dx.doi.org/10.1042/bst0350023.
Повний текст джерелаSun, Dengdi, and Maolin Hu. "Predicting Protein Function Based on the Topological Structure of Protein Interaction Networks." Journal of Computational and Theoretical Nanoscience 4, no. 7 (November 1, 2007): 1337–43. http://dx.doi.org/10.1166/jctn.2007.2421.
Повний текст джерелаSeo, Jung-hyun, and HyeongOk Lee. "Petersen-star networks modeled by optical transpose interconnection system." International Journal of Distributed Sensor Networks 17, no. 11 (November 2021): 155014772110331. http://dx.doi.org/10.1177/15501477211033115.
Повний текст джерелаEma, Romana Rahman, Akhi Khatun, Md Alam Hossain, Mostafijur Rahman Akhond, Nazmul Hossain, and Md Yasir Arafat. "Protein Secondary Structure Prediction using Hybrid Recurrent Neural Networks." Journal of Computer Science 18, no. 7 (July 1, 2022): 599–611. http://dx.doi.org/10.3844/jcssp.2022.599.611.
Повний текст джерелаReczko, M. "Protein Secondary Structure Prediction with Partially Recurrent Neural Networks." SAR and QSAR in Environmental Research 1, no. 2-3 (August 1993): 153–59. http://dx.doi.org/10.1080/10629369308028826.
Повний текст джерелаWagner, Andreas. "How the global structure of protein interaction networks evolves." Proceedings of the Royal Society of London. Series B: Biological Sciences 270, no. 1514 (March 7, 2003): 457–66. http://dx.doi.org/10.1098/rspb.2002.2269.
Повний текст джерелаMishra, Awdhesh Kumar, Swati Puranik, and Manoj Prasad. "Structure and regulatory networks of WD40 protein in plants." Journal of Plant Biochemistry and Biotechnology 21, S1 (August 19, 2012): 32–39. http://dx.doi.org/10.1007/s13562-012-0134-1.
Повний текст джерелаZhou, Shusen, Hailin Zou, Chanjuan Liu, Mujun Zang, and Tong Liu. "Combining Deep Neural Networks for Protein Secondary Structure Prediction." IEEE Access 8 (2020): 84362–70. http://dx.doi.org/10.1109/access.2020.2992084.
Повний текст джерелаWood, M. J., and J. D. Hirst. "Predicting protein secondary structure by cascade-correlation neural networks." Bioinformatics 20, no. 3 (January 22, 2004): 419–20. http://dx.doi.org/10.1093/bioinformatics/btg423.
Повний текст джерелаGrazioli, Gianmarc, Vy Duong, Elizabeth Diessner, Rachel W. Martin, and Carter T. Butts. "Reconstructing atomistic structures from residue-level protein structure networks using artificial neural networks." Biophysical Journal 121, no. 3 (February 2022): 133a. http://dx.doi.org/10.1016/j.bpj.2021.11.2046.
Повний текст джерелаNoor, Amina, Erchin Serpedin, Mohamed Nounou, Hazem Nounou, Nady Mohamed, and Lotfi Chouchane. "An Overview of the Statistical Methods Used for Inferring Gene Regulatory Networks and Protein-Protein Interaction Networks." Advances in Bioinformatics 2013 (February 21, 2013): 1–12. http://dx.doi.org/10.1155/2013/953814.
Повний текст джерелаLEE, PO-HAN, CHIEN-HUNG HUANG, JYWE-FEI FANG, HSIANG-CHUAN LIU, and KA-LOK NG. "HIERARCHICAL AND TOPOLOGICAL STUDY OF THE PROTEIN–PROTEIN INTERACTION NETWORKS." Advances in Complex Systems 08, no. 04 (December 2005): 383–97. http://dx.doi.org/10.1142/s0219525905000531.
Повний текст джерелаSora, Valentina, Dionisio Sanchez, and Elena Papaleo. "Bcl-xL Dynamics under the Lens of Protein Structure Networks." Journal of Physical Chemistry B 125, no. 17 (April 13, 2021): 4308–20. http://dx.doi.org/10.1021/acs.jpcb.0c11562.
Повний текст джерелаIbrahim, Ali Abdulhafidh, and Ibrahim Sabah Yasseen. "Using Neural Networks to Predict Secondary Structure for Protein Folding." Journal of Computer and Communications 05, no. 01 (2017): 1–8. http://dx.doi.org/10.4236/jcc.2017.51001.
Повний текст джерелаJinmiao Chen and N. S. Chaudhari. "Cascaded Bidirectional Recurrent Neural Networks for Protein Secondary Structure Prediction." IEEE/ACM Transactions on Computational Biology and Bioinformatics 4, no. 4 (October 2007): 572–82. http://dx.doi.org/10.1109/tcbb.2007.1055.
Повний текст джерелаYan, Wenying, Maomin Sun, Guang Hu, Jianhong Zhou, Wenyu Zhang, Jiajia Chen, Biao Chen, and Bairong Shen. "Amino acid contact energy networks impact protein structure and evolution." Journal of Theoretical Biology 355 (August 2014): 95–104. http://dx.doi.org/10.1016/j.jtbi.2014.03.032.
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