Добірка наукової літератури з теми "Protein sequence evolution"
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Статті в журналах з теми "Protein sequence evolution"
Trifonov, Edward N. "Early Molecular Evolution." Israel Journal of Ecology and Evolution 52, no. 3-4 (April 12, 2006): 375–87. http://dx.doi.org/10.1560/ijee_52_3-4_375.
Повний текст джерелаSikosek, Tobias, and Hue Sun Chan. "Biophysics of protein evolution and evolutionary protein biophysics." Journal of The Royal Society Interface 11, no. 100 (November 6, 2014): 20140419. http://dx.doi.org/10.1098/rsif.2014.0419.
Повний текст джерелаYomo, Tetsuya. "S12A2 Protein evolution from random sequence(Unifying Comprehension from Genome to Cells through Reconsideration of Protein)." Seibutsu Butsuri 47, supplement (2007): S17. http://dx.doi.org/10.2142/biophys.47.s17_3.
Повний текст джерелаChang, P. C., M. L. Hsieh, J. H. Shien, D. A. Graham, M. S. Lee, and H. K. Shieh. "Complete nucleotide sequence of avian paramyxovirus type 6 isolated from ducks." Journal of General Virology 82, no. 9 (September 1, 2001): 2157–68. http://dx.doi.org/10.1099/0022-1317-82-9-2157.
Повний текст джерелаBitard-Feildel, Tristan. "Navigating the amino acid sequence space between functional proteins using a deep learning framework." PeerJ Computer Science 7 (September 17, 2021): e684. http://dx.doi.org/10.7717/peerj-cs.684.
Повний текст джерелаChoi, I. G., and S. H. Kim. "Evolution of protein structural classes and protein sequence families." Proceedings of the National Academy of Sciences 103, no. 38 (September 7, 2006): 14056–61. http://dx.doi.org/10.1073/pnas.0606239103.
Повний текст джерелаChen, Z., F. Wen, N. Sun, and H. Zhao. "Directed evolution of homing endonuclease I-SceI with altered sequence specificity." Protein Engineering Design and Selection 22, no. 4 (January 10, 2009): 249–56. http://dx.doi.org/10.1093/protein/gzp001.
Повний текст джерелаPascual-García, Alberto, Miguel Arenas, and Ugo Bastolla. "The Molecular Clock in the Evolution of Protein Structures." Systematic Biology 68, no. 6 (April 23, 2019): 987–1002. http://dx.doi.org/10.1093/sysbio/syz022.
Повний текст джерелаWaters, E. R. "The molecular evolution of the small heat-shock proteins in plants." Genetics 141, no. 2 (October 1, 1995): 785–95. http://dx.doi.org/10.1093/genetics/141.2.785.
Повний текст джерелаHaimel, Matthias, Karin Pröll, and Michael Rebhan. "ProteinArchitect: Protein Evolution above the Sequence Level." PLoS ONE 4, no. 7 (July 15, 2009): e6176. http://dx.doi.org/10.1371/journal.pone.0006176.
Повний текст джерелаДисертації з теми "Protein sequence evolution"
Hollich, Volker. "Orthology and protein domain architecture evolution /." Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-783-9/.
Повний текст джерелаKosiol, Carolin. "Markov models for protein sequence evolution." Thesis, University of Cambridge, 2006. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.614166.
Повний текст джерелаWarnecke, Tobias. "Determinants of coding sequence evolution- beyong protein function." Thesis, University of Bath, 2010. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.531341.
Повний текст джерелаGuney, Tacettin Dogacan. "Prediction Of Protein-protein Interactions From Sequence Using Evolutionary Relations Of Proteins And Species." Master's thesis, METU, 2009. http://etd.lib.metu.edu.tr/upload/12611058/index.pdf.
Повний текст джерелаs phylogenetic profile because the co-evolutionary pressure hypothesis suggests that proteins with similar phylogenetic profiles are likely to interact. We also divide phylogenetic profile into smaller profiles based on the evolutionary lines. These divided profiles are then used to score the similarity between all possible protein pairs. Since not all profile groups have the same number of elements, it is a difficult task to assess the similarity between such pairs. We show that many commonly used measures do not work well and that the end result greatly depends on the type of the similarity measure used. We also introduce a novel similarity measure. The resulting dense putative interaction network contains many false-positive interactions, therefore we apply the Markov Clustering algorithm to cluster the protein-protein interaction network and filter out the weaker edges. The end result is a set of clusters where proteins within the clusters are likely to be functionally linked and to interact. While this method does not perform as well as supervised methods, it has the advantage of not requiring a training set and being able to work only using sequence data and evolutionary information. So it can be used as a first step in identifying protein-protein interactions in newly-sequenced organisms.
Davies, L. "Sequence database searching using structural models of protein evolution." Thesis, University of Cambridge, 2002. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.598371.
Повний текст джерелаWistrand, Markus. "Hidden Markov models for remote protein homology detection /." Stockholm, 2005. http://diss.kib.ki.se/2006/91-7140-598-4/.
Повний текст джерелаNordesjö, Olle. "Searching for novel protein-protein specificities using a combined approach of sequence co-evolution and local structural equilibration." Thesis, Uppsala universitet, Institutionen för biologisk grundutbildning, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-275040.
Повний текст джерелаHöglund, Pär J. "Identification, Characterization and Evolution of Membrane-bound Proteins /." Uppsala : Acta Universitatis Upsaliensis Acta Universitatis Upsaliensis, 2008. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-9329.
Повний текст джерелаDubey, Anshul. "Search and Analysis of the Sequence Space of a Protein Using Computational Tools." Diss., Georgia Institute of Technology, 2006. http://hdl.handle.net/1853/14115.
Повний текст джерелаRandall, Ryan Nicole. "Experimental phylogenetics: a benchmark for ancestral sequence reconstruction." Thesis, Georgia Institute of Technology, 2012. http://hdl.handle.net/1853/48998.
Повний текст джерелаКниги з теми "Protein sequence evolution"
Lorne Conference on Protein Structure & Function (28th 2003). 28th Annual Lorne Conference on Protein Structure & Function: Sun. 9 - Thurs. 13 February 2003. [Lorne, Vic: s.n., 2003.
Знайти повний текст джерелаM, Stone Edwin, and Schwartz Robert J, eds. Intervening sequences in evolution and development. New York: Oxford University Press, 1990.
Знайти повний текст джерелаEasteal, Simon. The mammalian molecular clock. New York: Springer-Verlag, 1995.
Знайти повний текст джерела1955-, Collet Chris, and Betty David 1953-, eds. The mammalian molecular clock. New York: Springer-Verlag, 1995.
Знайти повний текст джерелаAbelson, John N., Melvin I. Simon, and Russell F. Doolittle. Molecular Evolution: Computer Analysis of Protein and Nucleic Acid Sequences. Elsevier Science & Technology Books, 1990.
Знайти повний текст джерела(Editor), John N. Abelson, Melvin I. Simon (Editor), and Russell F. Doolittle (Editor), eds. Molecular Evolution: Computer Analysis of Protein and Nucleic Acid Sequences, Volume 183: Volume 183: Molecular Evolution (Methods in Enzymology). Academic Press, 1990.
Знайти повний текст джерела(Editor), John N. Abelson, Melvin I. Simon (Editor), and Russell F. Doolittle (Editor), eds. Molecular Evolution: Computer Analysis of Protein and Nucleic Acid Sequences, Volume 183: Volume 183: Molecular Evolution (Methods in Enzymology). Academic Press, 1990.
Знайти повний текст джерелаЧастини книг з теми "Protein sequence evolution"
Koonin, Eugene V., and Michael Y. Galperin. "Genomes and the Protein Universe." In Sequence — Evolution — Function, 357–69. Boston, MA: Springer US, 2003. http://dx.doi.org/10.1007/978-1-4757-3783-7_9.
Повний текст джерелаDokholyan, Nikolay V., and Eugene I. Shakhnovich. "Towards Unifying Protein Evolution Theory." In Structural Approaches to Sequence Evolution, 113–26. Berlin, Heidelberg: Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/978-3-540-35306-5_5.
Повний текст джерелаJörnvall, Hans, Olle Danielsson, Jan-Olov Höög, and Bengt Persson. "Alcohol Dehydrogenases: Patterns of Protein Evolution." In Methods in Protein Sequence Analysis, 275–82. Boston, MA: Springer US, 1993. http://dx.doi.org/10.1007/978-1-4899-1603-7_36.
Повний текст джерелаBastolla, Ugo, Markus Porto, H. Eduardo Roman, and Michele Vendruscolo. "The Structurally Constrained Neutral Model of Protein Evolution." In Structural Approaches to Sequence Evolution, 75–112. Berlin, Heidelberg: Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/978-3-540-35306-5_4.
Повний текст джерелаWakabayashi, Steven T., Maksim A. Shlykov, Ujjwal Kumar, Vamsee S. Reddy, Ankur Malhotra, Erik L. Clarke, Jonathan S. Chen, et al. "Deducing Transport Protein Evolution Based on Sequence, Structure, and Function." In Protein Families, 315–39. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2013. http://dx.doi.org/10.1002/9781118743089.ch12.
Повний текст джерелаGu, Xun. "Functional divergence in protein (family) sequence evolution." In Contemporary Issues in Genetics and Evolution, 133–41. Dordrecht: Springer Netherlands, 2003. http://dx.doi.org/10.1007/978-94-010-0229-5_4.
Повний текст джерелаRobey, Frank A. "The Evolution of the Regulatory Response to Products of Recombinant DNA Technology." In Methods in Protein Sequence Analysis · 1986, 67–78. Totowa, NJ: Humana Press, 1987. http://dx.doi.org/10.1007/978-1-59259-480-1_5.
Повний текст джерелаKocher, Thomas D., and Allan C. Wilson. "Sequence Evolution of Mitochondrial DNA in Humans and Chimpanzees: Control Region and a Protein-Coding Region." In Evolution of Life, 391–413. Tokyo: Springer Japan, 1991. http://dx.doi.org/10.1007/978-4-431-68302-5_25.
Повний текст джерелаBastolla, Ugo, and Miguel Arenas. "The Influence of Protein Stability on Sequence Evolution: Applications to Phylogenetic Inference." In Methods in Molecular Biology, 215–31. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8736-8_11.
Повний текст джерелаVanAntwerp, James, Patrick Finneran, Benedikt Dolgikh, and Daniel Woldring. "Ancestral Sequence Reconstruction and Alternate Amino Acid States Guide Protein Library Design for Directed Evolution." In Methods in Molecular Biology, 75–86. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2285-8_4.
Повний текст джерелаТези доповідей конференцій з теми "Protein sequence evolution"
Shovan, S. M., and Md Al Mehedi Hasan. "Prediction of Lysine Glycation PTM site in Protein using Peptide Sequence Evolution based Features." In 2019 International Conference on Electrical, Computer and Communication Engineering (ECCE). IEEE, 2019. http://dx.doi.org/10.1109/ecace.2019.8679407.
Повний текст джерелаKokilam, K. Vasantha, and D. Pon Mary Pushpa Latha. "A review on evolution of data mining techniques for protein sequence causing genetic disorder diseases." In 2012 IEEE International Conference on Computational Intelligence and Computing Research (ICCIC). IEEE, 2012. http://dx.doi.org/10.1109/iccic.2012.6510284.
Повний текст джерелаSadler, J. Evan. "THE MOLECULAR BIOLOGY OF VON WILLEBRAND FACTOR." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643930.
Повний текст джерелаRadolf, Justin, Sanjiv Kumar, David Smajs, Abhishek Dey, Arvind Anand, Morgan Ledoyt, Carson Karanian та ін. "LB1.1 Insights into the evolution of syphilis spirochetes within at-risk populations: sequence variation of outer membrane protein β-barrel domains in clinical samples". У STI and HIV World Congress Abstracts, July 9–12 2017, Rio de Janeiro, Brazil. BMJ Publishing Group Ltd, 2017. http://dx.doi.org/10.1136/sextrans-2017-053264.102.
Повний текст джерелаPannekoek, H., M. Linders, J. Keijer, H. Veerman, H. Van Heerikhuizen, and D. J. Loskutoff. "THE STRUCTURE OF THE HUMAN ENDOTHELIAL PLASMINOGEN ACTIVATOR INHIBITOR (PAI-1) GENE: NON-RANDOM POSITIONING OF INTRONS." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1644767.
Повний текст джерелаSCHÜTTE, MORITZ, NIELS KLITGORD, DANIEL SEGRÈ, and OLIVER EBENHÖH. "CO-EVOLUTION OF METABOLISM AND PROTEIN SEQUENCES." In Proceedings of the 9th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2009). IMPERIAL COLLEGE PRESS, 2010. http://dx.doi.org/10.1142/9781848165786_0013.
Повний текст джерелаKuznetsov, Vladimir A. "Stochastic Model of Evolution of Conserved Protein Coding Sequences." In UNSOLVED PROBLEMS OF NOISE AND FLUCTUATIONS: UPoN 2002: Third International Conference on Unsolved Problems of Noise and Fluctuations in Physics, Biology, and High Technology. AIP, 2003. http://dx.doi.org/10.1063/1.1584911.
Повний текст джерелаGiannelli, B. F. "MOLECULAR GENETICS OF HAEMOPHILIA." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643981.
Повний текст джерелаGoode, Matthew, Stéphane Guindon, and Allen Rodrigo. "Modelling the evolution of protein coding sequences sampled from Measurably Evolving Populations." In Proceedings of the 19th International Conference. IMPERIAL COLLEGE PRESS, 2008. http://dx.doi.org/10.1142/9781848163324_0013.
Повний текст джерелаStrandberg, L., D. Lawrence, and T. Ny. "ISOLATION OF THE GENOMIC REGION CODING FOR TYPE-1 PLASMINOGEN ACTIVATOR INHIBITOR." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1644439.
Повний текст джерелаЗвіти організацій з теми "Protein sequence evolution"
Izhar, Shamay, Maureen Hanson, and Nurit Firon. Expression of the Mitochondrial Locus Associated with Cytoplasmic Male Sterility in Petunia. United States Department of Agriculture, February 1996. http://dx.doi.org/10.32747/1996.7604933.bard.
Повний текст джерелаEyal, Yoram, and Sheila McCormick. Molecular Mechanisms of Pollen-Pistil Interactions in Interspecific Crossing Barriers in the Tomato Family. United States Department of Agriculture, May 2000. http://dx.doi.org/10.32747/2000.7573076.bard.
Повний текст джерелаRafaeli, Ada, Russell Jurenka, and Chris Sander. Molecular characterisation of PBAN-receptors: a basis for the development and screening of antagonists against Pheromone biosynthesis in moth pest species. United States Department of Agriculture, January 2008. http://dx.doi.org/10.32747/2008.7695862.bard.
Повний текст джерелаMawassi, Munir, and Valerian Dolja. Role of RNA Silencing Suppression in the Pathogenicity and Host Specificity of the Grapevine Virus A. United States Department of Agriculture, January 2010. http://dx.doi.org/10.32747/2010.7592114.bard.
Повний текст джерелаPerk, Shimon, Maricarmen Garcia, Alexander Panshin, Caroline Banet-Noach, Irina Gissin, Mark W. Jackwood, and David Stallknecht. Avian Influenza Virus H9N2: Characterization and Control Strategies. United States Department of Agriculture, June 2007. http://dx.doi.org/10.32747/2007.7709882.bard.
Повний текст джерелаFahima, Tzion, and Jorge Dubcovsky. Map-based cloning of the novel stripe rust resistance gene YrG303 and its use to engineer 1B chromosome with multiple beneficial traits. United States Department of Agriculture, January 2013. http://dx.doi.org/10.32747/2013.7598147.bard.
Повний текст джерела