Статті в журналах з теми "Protein sequence alignment"
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Staritzbichler, René, Edoardo Sarti, Emily Yaklich, Antoniya Aleksandrova, Marcus Stamm, Kamil Khafizov, and Lucy R. Forrest. "Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors." PLOS ONE 16, no. 4 (April 30, 2021): e0239881. http://dx.doi.org/10.1371/journal.pone.0239881.
Повний текст джерелаPervez, Muhammad Tariq, Hayat Ali Shah, Masroor Ellahi Babar, Nasir Naveed, and Muhammad Shoaib. "SAliBASE: A Database of Simulated Protein Alignments." Evolutionary Bioinformatics 15 (January 2019): 117693431882108. http://dx.doi.org/10.1177/1176934318821080.
Повний текст джерелаCavanaugh, David, and Krishnan Chittur. "A hydrophobic proclivity index for protein alignments." F1000Research 4 (October 21, 2015): 1097. http://dx.doi.org/10.12688/f1000research.6348.1.
Повний текст джерелаCavanaugh, David, and Krishnan Chittur. "A hydrophobic proclivity index for protein alignments." F1000Research 4 (October 15, 2020): 1097. http://dx.doi.org/10.12688/f1000research.6348.2.
Повний текст джерелаAadland, Kelsey, and Bryan Kolaczkowski. "Alignment-Integrated Reconstruction of Ancestral Sequences Improves Accuracy." Genome Biology and Evolution 12, no. 9 (August 12, 2020): 1549–65. http://dx.doi.org/10.1093/gbe/evaa164.
Повний текст джерелаBarton, Geoffrey J. "Protein Sequence Alignment Techniques." Acta Crystallographica Section D Biological Crystallography 54, no. 6 (November 1, 1998): 1139–46. http://dx.doi.org/10.1107/s0907444998008324.
Повний текст джерелаKanagarajadurai, Karuppiah, Singaravelu Kalaimathy, Paramasivam Nagarajan, and Ramanathan Sowdhamini. "PASS2." International Journal of Knowledge Discovery in Bioinformatics 2, no. 4 (October 2011): 53–66. http://dx.doi.org/10.4018/jkdb.2011100104.
Повний текст джерелаPei, Jimin. "Multiple protein sequence alignment." Current Opinion in Structural Biology 18, no. 3 (June 2008): 382–86. http://dx.doi.org/10.1016/j.sbi.2008.03.007.
Повний текст джерелаPAI, TUN-WEN, RUEI-HSIANG CHANG, CHIEN-MING CHEN, PO-HAN SU, LEE-JYI WANG, KUEN-TSAIR LAY, and KUO-TORNG LAN. "MULTIPLE STRUCTURE ALIGNMENT BASED ON GEOMETRICAL CORRELATION OF SECONDARY STRUCTURE ELEMENTS." New Mathematics and Natural Computation 06, no. 01 (March 2010): 77–95. http://dx.doi.org/10.1142/s1793005710001621.
Повний текст джерелаHenneke, Christina M., Michael J. Danson, David W. Hough, and David J. Osguthorpe. "Sequence alignment of citrate synthase proteins using a multiple sequence alignment algorithm and multiple scoring matrices." "Protein Engineering, Design and Selection" 2, no. 8 (1989): 597–604. http://dx.doi.org/10.1093/protein/2.8.597.
Повний текст джерелаSierk, Michael L., Michael E. Smoot, Ellen J. Bass, and William R. Pearson. "Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments." BMC Bioinformatics 11, no. 1 (2010): 146. http://dx.doi.org/10.1186/1471-2105-11-146.
Повний текст джерелаTu, Shin-Lin, Jeannette Staheli, Colum McClay, Kathleen McLeod, Timothy Rose, and Chris Upton. "Base-By-Base Version 3: New Comparative Tools for Large Virus Genomes." Viruses 10, no. 11 (November 15, 2018): 637. http://dx.doi.org/10.3390/v10110637.
Повний текст джерелаZhan, Qing, Yilei Fu, Qinghua Jiang, Bo Liu, Jiajie Peng, and Yadong Wang. "SpliVert: A Protein Multiple Sequence Alignment Refinement Method Based on Splitting-Splicing Vertically." Protein & Peptide Letters 27, no. 4 (March 17, 2020): 295–302. http://dx.doi.org/10.2174/0929866526666190806143959.
Повний текст джерелаStamm, Marcus, René Staritzbichler, Kamil Khafizov, and Lucy R. Forrest. "AlignMe—a membrane protein sequence alignment web server." Nucleic Acids Research 42, W1 (April 21, 2014): W246—W251. http://dx.doi.org/10.1093/nar/gku291.
Повний текст джерелаTAYLOR, WILLIAM R. "Motif-Biased Protein Sequence Alignment." Journal of Computational Biology 1, no. 4 (January 1994): 297–310. http://dx.doi.org/10.1089/cmb.1994.1.297.
Повний текст джерелаFox, Gearóid, Fabian Sievers, and Desmond G. Higgins. "Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments." Bioinformatics 32, no. 6 (November 14, 2015): 814–20. http://dx.doi.org/10.1093/bioinformatics/btv592.
Повний текст джерелаMIAO, XIJIANG, PETER J. WADDELL, and HOMAYOUN VALAFAR. "TALI: LOCAL ALIGNMENT OF PROTEIN STRUCTURES USING BACKBONE TORSION ANGLES." Journal of Bioinformatics and Computational Biology 06, no. 01 (February 2008): 163–81. http://dx.doi.org/10.1142/s0219720008003370.
Повний текст джерелаMadhusudhan, M. S., Marc A. Marti-Renom, Roberto Sanchez, and Andrej Sali. "Variable gap penalty for protein sequence–structure alignment." Protein Engineering, Design and Selection 19, no. 3 (January 19, 2006): 129–33. http://dx.doi.org/10.1093/protein/gzj005.
Повний текст джерелаSALEM, SAEED, MOHAMMED J. ZAKI, and CHRISTOPHER BYSTROFF. "ITERATIVE NON-SEQUENTIAL PROTEIN STRUCTURAL ALIGNMENT." Journal of Bioinformatics and Computational Biology 07, no. 03 (June 2009): 571–96. http://dx.doi.org/10.1142/s0219720009004205.
Повний текст джерелаKauffman, D. L., P. J. Keller, A. Bennick, and M. Blum. "Alignment of Amino Acid and DNA Sequences of Human Proline-rich Proteins." Critical Reviews in Oral Biology & Medicine 4, no. 3 (April 1993): 287–92. http://dx.doi.org/10.1177/10454411930040030501.
Повний текст джерелаManavalan, Mani. "Fast Model-based Protein Homology Discovery without Alignment." Asia Pacific Journal of Energy and Environment 1, no. 2 (December 31, 2014): 169–84. http://dx.doi.org/10.18034/apjee.v1i2.580.
Повний текст джерелаTh.Mevissen, Heina, and Martin Vingron. "Quantifying the local reliability of a sequence alignment." "Protein Engineering, Design and Selection" 9, no. 2 (1996): 127–32. http://dx.doi.org/10.1093/protein/9.2.127.
Повний текст джерелаJeon, Yoon-Seong, Kihyun Lee, Sang-Cheol Park, Bong-Soo Kim, Yong-Joon Cho, Sung-Min Ha, and Jongsik Chun. "EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes." International Journal of Systematic and Evolutionary Microbiology 64, Pt_2 (February 1, 2014): 689–91. http://dx.doi.org/10.1099/ijs.0.059360-0.
Повний текст джерелаLee, Sung Jong, Keehyoung Joo, Sangjin Sim, Juyong Lee, In-Ho Lee, and Jooyoung Lee. "CRFalign: A Sequence-Structure Alignment of Proteins Based on a Combination of HMM-HMM Comparison and Conditional Random Fields." Molecules 27, no. 12 (June 9, 2022): 3711. http://dx.doi.org/10.3390/molecules27123711.
Повний текст джерелаKuchaiev, Oleksii, Tijana Milenković, Vesna Memišević, Wayne Hayes, and Nataša Pržulj. "Topological network alignment uncovers biological function and phylogeny." Journal of The Royal Society Interface 7, no. 50 (March 24, 2010): 1341–54. http://dx.doi.org/10.1098/rsif.2010.0063.
Повний текст джерелаDaniels, Noah M., Shilpa Nadimpalli, and Lenore J. Cowen. "Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment." BMC Bioinformatics 13, no. 1 (2012): 259. http://dx.doi.org/10.1186/1471-2105-13-259.
Повний текст джерелаCarpentier, Mathilde, and Jacques Chomilier. "Protein multiple alignments: sequence-based versus structure-based programs." Bioinformatics 35, no. 20 (April 3, 2019): 3970–80. http://dx.doi.org/10.1093/bioinformatics/btz236.
Повний текст джерелаPiña, Johan S., Simon Orozco-Arias, Nicolas Tobón-Orozco, Leonardo Camargo-Forero, Reinel Tabares-Soto, and Romain Guyot. "G-SAIP: Graphical Sequence Alignment Through Parallel Programming in the Post-Genomic Era." Evolutionary Bioinformatics 19 (January 2023): 117693432211505. http://dx.doi.org/10.1177/11769343221150585.
Повний текст джерелаCHUANG, LI-YEH, CHENG-HONG YANG, CHAO-CHING CHANG, WEN-SHYONG TZOU, and LI-CHENG JIN. "VSA-TOOL: A TOOL FOR DATA VISUALIZATION IN SEQUENCE ALIGNMENT." Biomedical Engineering: Applications, Basis and Communications 16, no. 02 (April 25, 2004): 68–72. http://dx.doi.org/10.4015/s1016237204000116.
Повний текст джерелаFallaize, Christopher J., Peter J. Green, Kanti V. Mardia, and Stuart Barber. "Bayesian protein sequence and structure alignment." Journal of the Royal Statistical Society: Series C (Applied Statistics) 69, no. 2 (January 8, 2020): 301–25. http://dx.doi.org/10.1111/rssc.12394.
Повний текст джерелаGotoh, Osamu. "Direct mapping and alignment of protein sequences onto genomic sequence." Bioinformatics 24, no. 21 (August 26, 2008): 2438–44. http://dx.doi.org/10.1093/bioinformatics/btn460.
Повний текст джерелаAhola, Virpi, Tero Aittokallio, Esa Uusipaikka, and Mauno Vihinen. "Statistical Methods for Identifying Conserved Residues in Multiple Sequence Alignment." Statistical Applications in Genetics and Molecular Biology 3, no. 1 (January 30, 2004): 1–28. http://dx.doi.org/10.2202/1544-6115.1074.
Повний текст джерелаRoca, Alberto I., Aaron C. Abajian, and David J. Vigerust. "ProfileGrids solve the large alignment visualization problem: influenza hemagglutinin example." F1000Research 2 (January 4, 2013): 2. http://dx.doi.org/10.12688/f1000research.2-2.v1.
Повний текст джерелаKaur, Navjot, Rajbir Singh Cheema, and Harmandeep Singh Harmandeep Singh. "Multiple Sequence Alignment and Profile Analysis of Protein Family Utsing Hidden Markov Model." International Journal of Scientific Research 2, no. 6 (June 1, 2012): 208–11. http://dx.doi.org/10.15373/22778179/june2013/66.
Повний текст джерелаLebsir, Rabah, Abdesslem Layeb, and Tahi Fariza. "A Greedy Clustering Algorithm for Multiple Sequence Alignment." International Journal of Cognitive Informatics and Natural Intelligence 15, no. 4 (October 2021): 1–17. http://dx.doi.org/10.4018/ijcini.20211001.oa41.
Повний текст джерелаBond, Charles Simon, and Alexander Wolfgang Schüttelkopf. "ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments." Acta Crystallographica Section D Biological Crystallography 65, no. 5 (April 18, 2009): 510–12. http://dx.doi.org/10.1107/s0907444909007835.
Повний текст джерелаSauder, J. Michael, Jonathan W. Arthur, and Roland L. Dunbrack Jr. "Large-scale comparison of protein sequence alignment algorithms with structure alignments." Proteins: Structure, Function, and Genetics 40, no. 1 (July 1, 2000): 6–22. http://dx.doi.org/10.1002/(sici)1097-0134(20000701)40:1<6::aid-prot30>3.0.co;2-7.
Повний текст джерелаChen, Jing, and Jia Huang. "A novel network aligner for the analysis of multiple protein-protein interaction networks." Computer Science and Information Systems, no. 00 (2021): 30. http://dx.doi.org/10.2298/csis200909030c.
Повний текст джерелаPazos, Florencio. "Prediction of Protein Sites and Physicochemical Properties Related to Functional Specificity." Bioengineering 8, no. 12 (December 3, 2021): 201. http://dx.doi.org/10.3390/bioengineering8120201.
Повний текст джерелаMd Isa, Mohd Nazrin, Sohiful Anuar Zainol Murad, Mohamad Imran Ahmad, Muhammad M. Ramli, and Rizalafande Che Ismail. "An Efficient Scheduling Technique for Biological Sequence Alignment." Applied Mechanics and Materials 754-755 (April 2015): 1087–92. http://dx.doi.org/10.4028/www.scientific.net/amm.754-755.1087.
Повний текст джерелаESKIN, ELEAZAR, and SAGI SNIR. "INCORPORATING HOMOLOGUES INTO SEQUENCE EMBEDDINGS FOR PROTEIN ANALYSIS." Journal of Bioinformatics and Computational Biology 05, no. 03 (June 2007): 717–38. http://dx.doi.org/10.1142/s0219720007002734.
Повний текст джерелаBIANCHETTI, LAURENT, JULIE DAWN THOMPSON, ODILE LECOMPTE, FREDERIC PLEWNIAK, and OLIVIER POCH. "vALId: VALIDATION OF PROTEIN SEQUENCE QUALITY BASED ON MULTIPLE ALIGNMENT DATA." Journal of Bioinformatics and Computational Biology 03, no. 04 (August 2005): 929–47. http://dx.doi.org/10.1142/s0219720005001326.
Повний текст джерелаLee, Justin, and Shawn X. Wang. "A software tool for protein sequence alignment." International Journal of Bioinformatics Research and Applications 16, no. 4 (2020): 319. http://dx.doi.org/10.1504/ijbra.2020.113018.
Повний текст джерелаLee, Justin, and Shawn X. Wang. "A software tool for protein sequence alignment." International Journal of Bioinformatics Research and Applications 16, no. 4 (2020): 319. http://dx.doi.org/10.1504/ijbra.2020.10035352.
Повний текст джерелаSomasundar, K., and S. Radhakrish. "Nimble Protein Sequence Alignment in Grid (NPSAG)." Journal of Computer Science 4, no. 1 (January 1, 2008): 36–41. http://dx.doi.org/10.3844/jcssp.2008.36.41.
Повний текст джерелаMd. Isa, Mohd Nazrin, Ku Noor Dhaniah Ku Muhsen, Dayana Saiful Nurdin, Muhammad Imran Ahmad, Sohiful Anuar Zainol Murad, Shaiful Nizam Mohyar, Azizi Harun, and Razaidi Hussin. "FPGA-based protein sequence alignment : A review." EPJ Web of Conferences 162 (2017): 01075. http://dx.doi.org/10.1051/epjconf/201716201075.
Повний текст джерелаRangwala, H., and G. Karypis. "Incremental window-based protein sequence alignment algorithms." Bioinformatics 23, no. 2 (January 15, 2007): e17-e23. http://dx.doi.org/10.1093/bioinformatics/btl297.
Повний текст джерелаElofsson, Arne. "A study on protein sequence alignment quality." Proteins: Structure, Function, and Genetics 46, no. 3 (January 29, 2002): 330–39. http://dx.doi.org/10.1002/prot.10043.
Повний текст джерелаSherman, Westley Arthur, Durga Bhavani Kuchibhatla, Vachiranee Limviphuvadh, Sebastian Maurer-Stroh, Birgit Eisenhaber, and Frank Eisenhaber. "HPMV: Human protein mutation viewer — relating sequence mutations to protein sequence architecture and function changes." Journal of Bioinformatics and Computational Biology 13, no. 05 (October 2015): 1550028. http://dx.doi.org/10.1142/s0219720015500286.
Повний текст джерелаLong, Hai Xia, Li Hua Wu, and Yu Zhang. "Multiple Sequence Alignment Based on Profile Hidden Markov Model and Quantum-Behaved Particle Swarm Optimization with Selection Method." Advanced Materials Research 282-283 (July 2011): 7–12. http://dx.doi.org/10.4028/www.scientific.net/amr.282-283.7.
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