Добірка наукової літератури з теми "Protein sequence alignment"
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Статті в журналах з теми "Protein sequence alignment"
Staritzbichler, René, Edoardo Sarti, Emily Yaklich, Antoniya Aleksandrova, Marcus Stamm, Kamil Khafizov, and Lucy R. Forrest. "Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors." PLOS ONE 16, no. 4 (April 30, 2021): e0239881. http://dx.doi.org/10.1371/journal.pone.0239881.
Повний текст джерелаPervez, Muhammad Tariq, Hayat Ali Shah, Masroor Ellahi Babar, Nasir Naveed, and Muhammad Shoaib. "SAliBASE: A Database of Simulated Protein Alignments." Evolutionary Bioinformatics 15 (January 2019): 117693431882108. http://dx.doi.org/10.1177/1176934318821080.
Повний текст джерелаCavanaugh, David, and Krishnan Chittur. "A hydrophobic proclivity index for protein alignments." F1000Research 4 (October 21, 2015): 1097. http://dx.doi.org/10.12688/f1000research.6348.1.
Повний текст джерелаCavanaugh, David, and Krishnan Chittur. "A hydrophobic proclivity index for protein alignments." F1000Research 4 (October 15, 2020): 1097. http://dx.doi.org/10.12688/f1000research.6348.2.
Повний текст джерелаAadland, Kelsey, and Bryan Kolaczkowski. "Alignment-Integrated Reconstruction of Ancestral Sequences Improves Accuracy." Genome Biology and Evolution 12, no. 9 (August 12, 2020): 1549–65. http://dx.doi.org/10.1093/gbe/evaa164.
Повний текст джерелаBarton, Geoffrey J. "Protein Sequence Alignment Techniques." Acta Crystallographica Section D Biological Crystallography 54, no. 6 (November 1, 1998): 1139–46. http://dx.doi.org/10.1107/s0907444998008324.
Повний текст джерелаKanagarajadurai, Karuppiah, Singaravelu Kalaimathy, Paramasivam Nagarajan, and Ramanathan Sowdhamini. "PASS2." International Journal of Knowledge Discovery in Bioinformatics 2, no. 4 (October 2011): 53–66. http://dx.doi.org/10.4018/jkdb.2011100104.
Повний текст джерелаPei, Jimin. "Multiple protein sequence alignment." Current Opinion in Structural Biology 18, no. 3 (June 2008): 382–86. http://dx.doi.org/10.1016/j.sbi.2008.03.007.
Повний текст джерелаPAI, TUN-WEN, RUEI-HSIANG CHANG, CHIEN-MING CHEN, PO-HAN SU, LEE-JYI WANG, KUEN-TSAIR LAY, and KUO-TORNG LAN. "MULTIPLE STRUCTURE ALIGNMENT BASED ON GEOMETRICAL CORRELATION OF SECONDARY STRUCTURE ELEMENTS." New Mathematics and Natural Computation 06, no. 01 (March 2010): 77–95. http://dx.doi.org/10.1142/s1793005710001621.
Повний текст джерелаHenneke, Christina M., Michael J. Danson, David W. Hough, and David J. Osguthorpe. "Sequence alignment of citrate synthase proteins using a multiple sequence alignment algorithm and multiple scoring matrices." "Protein Engineering, Design and Selection" 2, no. 8 (1989): 597–604. http://dx.doi.org/10.1093/protein/2.8.597.
Повний текст джерелаДисертації з теми "Protein sequence alignment"
Abhiman, Saraswathi. "Prediction of function shift in protein families /." Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-869-X/.
Повний текст джерелаCarroll, Hyrum D. "Biologically Relevant Multiple Sequence Alignment." Diss., CLICK HERE for online access, 2008. http://contentdm.lib.byu.edu/ETD/image/etd2623.pdf.
Повний текст джерелаTalbot, Danielle. "Identifying misalignments in sequence alignment for protein modelling." Thesis, University of Reading, 2005. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.445754.
Повний текст джерелаGarriga, Nogales Edgar 1990. "New algorithmic contributions for large scale multiple sequence alignments of protein sequences." Doctoral thesis, TDX (Tesis Doctorals en Xarxa), 2022. http://hdl.handle.net/10803/673526.
Повний текст джерелаEn aquests dies de profunds canvis i una ràpida evolució de la tecnologia, la quantitat de dataque la ciència ha de treballar ha crescut increïblement ràpid i la grandària dels arxius ha crescutde manera quasi prohibitiva.Els alineaments múltiples de seqüència (MSA) es fan servir endiverses àrees de la biologia, i l'increment de les dades ha produït una degradació delsresultats. És per això, que es proposa una nova estratègia per realitzar els alineaments. Aquestnou paradigma permet alinear milions de seqüències i l'opcio de modularitzar el procés.'Regressive' permet la paral·lelització del procés i la combinació de diferents algoritmesd'agrupacio (guide-tree) amb el mètode de alineament que és desitgi. Dins del camp del'agrupació, s'ha de repensar l'estratègia per crear els guide-tree. Un estudi sobre l'estat actualdels mètodes i les seves virtuts i punts febles ha sigut realitzar per llençar una mica de llum enaquesta àrea. Els 'guide-tree' no poden ser el coll de botella, i haurien de servir per començarde la millor manera possible el procés d'alineament.
Bonneau, Richard A. "Gene annotation using Ab initio protein structure prediction : method development and application to major protein families /." Thesis, Connect to this title online; UW restricted, 2001. http://hdl.handle.net/1773/9241.
Повний текст джерелаLassmann, Timo. "Algorithms for building and evaluating multiple sequence alignments /." Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-887-8/.
Повний текст джерелаHollich, Volker. "Orthology and protein domain architecture evolution /." Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-783-9/.
Повний текст джерелаLi, Yuheng. "Searching for remotely homologous sequences in protein databases with hybrid PSI-blast." The Ohio State University, 2006. http://rave.ohiolink.edu/etdc/view?acc_num=osu1164741421.
Повний текст джерелаDeBlasio, Dan, and John Kececioglu. "Core column prediction for protein multiple sequence alignments." BIOMED CENTRAL LTD, 2017. http://hdl.handle.net/10150/623957.
Повний текст джерелаAniba, Mohamed Radhouane. "Knowledge based expert system development in bioinformatics : applied to multiple sequence alignment of protein sequences." Strasbourg, 2010. https://publication-theses.unistra.fr/public/theses_doctorat/2010/ANIBA_Mohamed_Radhouane_2010.pdf.
Повний текст джерелаThe objective of this PhD project was the development of an integrated expert system to test, evaluate and optimize all the stages of the construction and the analysis of a multiple sequence alignment. The new system was validated using standard benchmark cases and brings a ncw vision to software development in Bioinformatics: knowledge-guided systems. The architecture used to build the expert system is highly modular and flcxible, allowing AlcxSys to evolve as new algorithms are made available. In the future, AlexSys will he uscd to furthcr optimize each stage of the alignment process, for example by optimizing the input parameters of the different algorithms. The inference engine could also be extended to identify combinations of algorithms that could potentially provide complementary information about the input sequences. For example, well aligned regions from different aligners could be identified and combined into a single consensus alignment. Additional structural and functional information could also be exploited to improve the final alignment accuracy. Finally, a crucial aspect of any bioinformatics tool is its accessibility and usability. Therefore, we are currently developing a web server, and a web services based distributed system. We will also design a novel visualization module that will provide an intuitive, user-friendly interface to all the information retrieved and constructed by AlexSys
Книги з теми "Protein sequence alignment"
Russell, David James. Multiple sequence alignment methods. New York: Humana Press, 2014.
Знайти повний текст джерелаHomology modeling: Methods and protocols. New York: Humana Press, 2012.
Знайти повний текст джерелаSheng wu ji suan: Sheng wu xu lie de fen xi fang fa yu ying yong. Beijing: Ke xue chu ban she, 2010.
Знайти повний текст джерелаЧастини книг з теми "Protein sequence alignment"
Do, Chuong B., and Kazutaka Katoh. "Protein Multiple Sequence Alignment." In Functional Proteomics, 379–413. Totowa, NJ: Humana Press, 2008. http://dx.doi.org/10.1007/978-1-59745-398-1_25.
Повний текст джерелаBarton, Geoffrey J., Robert B. Russell, and Craig D. Livingstone. "Prediction of Protein Structure from Multiple Sequence Alignment." In Methods in Protein Sequence Analysis, 209–20. Boston, MA: Springer US, 1993. http://dx.doi.org/10.1007/978-1-4899-1603-7_27.
Повний текст джерелаShatsky, Maxim, Ruth Nussinov, and Haim J. Wolfson. "Algorithms for Multiple Protein Structure Alignment and Structure-Derived Multiple Sequence Alignment." In Protein Structure Prediction, 125–46. Totowa, NJ: Humana Press, 2008. http://dx.doi.org/10.1007/978-1-59745-574-9_5.
Повний текст джерелаLiu, Yongchao, and Bertil Schmidt. "Multiple Protein Sequence Alignment with MSAProbs." In Methods in Molecular Biology, 211–18. Totowa, NJ: Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-646-7_14.
Повний текст джерелаBarton, Geoffrey J. "The AMPS Package for Multiple Protein Sequence Alignment." In Computer Analysis of Sequence Data, 327–47. Totowa, NJ: Humana Press, 1994. http://dx.doi.org/10.1385/0-89603-276-0:327.
Повний текст джерелаDo, Chuong B., Samuel S. Gross, and Serafim Batzoglou. "CONTRAlign: Discriminative Training for Protein Sequence Alignment." In Lecture Notes in Computer Science, 160–74. Berlin, Heidelberg: Springer Berlin Heidelberg, 2006. http://dx.doi.org/10.1007/11732990_15.
Повний текст джерелаHiggins, Desmond G. "Clustal V: Multiple Alignment of DNA and Protein Sequences." In Computer Analysis of Sequence Data, 307–18. Totowa, NJ: Humana Press, 1994. http://dx.doi.org/10.1385/0-89603-276-0:307.
Повний текст джерелаKumar, Manish, Ranjeet Kumar, and R. Nidhya. "WOAMSA: Whale Optimization Algorithm for Multiple Sequence Alignment of Protein Sequence." In Computational Vision and Bio-Inspired Computing, 131–39. Cham: Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-37218-7_15.
Повний текст джерелаManikandan, P., and D. Ramyachitra. "Influence of Parameters in Multiple Sequence Alignment Methods for Protein Sequences." In Advances in Intelligent Systems and Computing, 183–91. Singapore: Springer Singapore, 2018. http://dx.doi.org/10.1007/978-981-10-7871-2_18.
Повний текст джерелаReizer, Aiala, and Jonathan Reizer. "Progressive Multiple Alignment of Protein Sequences and the Construction of Phylogenetic Trees." In Computer Analysis of Sequence Data, 319–25. Totowa, NJ: Humana Press, 1994. http://dx.doi.org/10.1385/0-89603-276-0:319.
Повний текст джерелаТези доповідей конференцій з теми "Protein sequence alignment"
Hasan, L., M. Kentie, and Z. Al-Ars. "GPU-accelerated protein sequence alignment." In 2011 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2011. http://dx.doi.org/10.1109/iembs.2011.6090679.
Повний текст джерелаMidic, Uros, A. Keith Dunker, and Zoran Obradovic. "Protein sequence alignment and structural disorder." In the KDD-09 Workshop. New York, New York, USA: ACM Press, 2009. http://dx.doi.org/10.1145/1562090.1562096.
Повний текст джерелаHung, Che-Lun, Chun-Yuan Lin, Yeh-Ching Chung, and Chuan Yi Tang. "Introducing Variable Gap Penalties into Three-Sequence Alignment for Protein Sequences." In 22nd International Conference on Advanced Information Networking and Applications - Workshops (aina workshops 2008). IEEE, 2008. http://dx.doi.org/10.1109/waina.2008.101.
Повний текст джерелаCarvalho, Leonardo Reboucas de, Alba Cristina Alves Melo, and Aleteia Araujo. "A Framework for Executing Protein Sequence Alignment in Cloud Computing Services." In Simpósio em Sistemas Computacionais de Alto Desempenho. Sociedade Brasileira de Computação, 2021. http://dx.doi.org/10.5753/wscad.2021.18511.
Повний текст джерелаWise, Michael J. "Alignment algorithms revisited: Alignment algorithms for low similarity protein sequence comparisons." In 2003 European Control Conference (ECC). IEEE, 2003. http://dx.doi.org/10.23919/ecc.2003.7086563.
Повний текст джерелаAit, Layal Al, Eduardo Corel, and Burkhard Morgenstern. "Using protein-domain information for multiple sequence alignment." In 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE). IEEE, 2012. http://dx.doi.org/10.1109/bibe.2012.6399667.
Повний текст джерелаNord, Alex, Peter Hornbeck, Kaitlin Carey, and Travis Wheeler. "Splice-Aware Multiple Sequence Alignment of Protein Isoforms." In BCB '18: 9th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics. New York, NY, USA: ACM, 2018. http://dx.doi.org/10.1145/3233547.3233592.
Повний текст джерела"IMPROVEMENTS TO A MULTIPLE PROTEIN SEQUENCE ALIGNMENT TOOL." In International Conference on Bioinformatics Models, Methods and Algorithms. SciTePress - Science and and Technology Publications, 2012. http://dx.doi.org/10.5220/0003789202260233.
Повний текст джерелаIryanto, Syam B., Wisnu A. Kusuma, Rifki Sadikin, and I. Wayan A. Swardiana. "GPU-accelerated protein sequence alignment for Jamu prediction." In 2017 International Conference on Computer, Control, Informatics and its Applications (IC3INA). IEEE, 2017. http://dx.doi.org/10.1109/ic3ina.2017.8251754.
Повний текст джерелаQi-wen Dong, Lei Lin, Xiao-Long Wang, and Ming-Hui Li. "Contact-based Simulated Annealing Protein Sequence Alignment Method." In 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference. IEEE, 2005. http://dx.doi.org/10.1109/iembs.2005.1617054.
Повний текст джерелаЗвіти організацій з теми "Protein sequence alignment"
Rangwala, Huzefa, and George Karypis. Incremental Window-based Protein Sequence Alignment Algorithms. Fort Belvoir, VA: Defense Technical Information Center, March 2006. http://dx.doi.org/10.21236/ada444856.
Повний текст джерелаRafaeli, Ada, and Russell Jurenka. Molecular Characterization of PBAN G-protein Coupled Receptors in Moth Pest Species: Design of Antagonists. United States Department of Agriculture, December 2012. http://dx.doi.org/10.32747/2012.7593390.bard.
Повний текст джерелаRafaeli, Ada, Russell Jurenka, and Chris Sander. Molecular characterisation of PBAN-receptors: a basis for the development and screening of antagonists against Pheromone biosynthesis in moth pest species. United States Department of Agriculture, January 2008. http://dx.doi.org/10.32747/2008.7695862.bard.
Повний текст джерела