Статті в журналах з теми "Protein interactions (PPI)"
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CHUA, HON NIAN, KANG NING, WING-KIN SUNG, HON WAI LEONG, and LIMSOON WONG. "USING INDIRECT PROTEIN–PROTEIN INTERACTIONS FOR PROTEIN COMPLEX PREDICTION." Journal of Bioinformatics and Computational Biology 06, no. 03 (June 2008): 435–66. http://dx.doi.org/10.1142/s0219720008003497.
Kusova, Aleksandra M., Aleksandr E. Sitnitsky, Vladimir N. Uversky, and Yuriy F. Zuev. "Effect of Protein–Protein Interactions on Translational Diffusion of Spheroidal Proteins." International Journal of Molecular Sciences 23, no. 16 (August 17, 2022): 9240. http://dx.doi.org/10.3390/ijms23169240.
Poot Velez, Albros Hermes, Fernando Fontove, and Gabriel Del Rio. "Protein–Protein Interactions Efficiently Modeled by Residue Cluster Classes." International Journal of Molecular Sciences 21, no. 13 (July 6, 2020): 4787. http://dx.doi.org/10.3390/ijms21134787.
Velasco-García, Roberto, and Rocío Vargas-Martínez. "The study of protein–protein interactions in bacteria." Canadian Journal of Microbiology 58, no. 11 (November 2012): 1241–57. http://dx.doi.org/10.1139/w2012-104.
Kaur, Rajpreet, Poonam Khullar, and Anita Gupta. "Protein-Protein Interactions Followed by in-Situ Synthesis of Gold Nanoparticles." ECS Transactions 107, no. 1 (April 24, 2022): 16375–90. http://dx.doi.org/10.1149/10701.16375ecst.
Yang, Lei, and Xianglong Tang. "Protein-Protein Interactions Prediction Based on Iterative Clique Extension with Gene Ontology Filtering." Scientific World Journal 2014 (2014): 1–6. http://dx.doi.org/10.1155/2014/523634.
Abdullah, Syahid, Wisnu Ananta Kusuma, and Sony Hartono Wijaya. "Sequence-based prediction of protein-protein interaction using autocorrelation features and machine learning." Jurnal Teknologi dan Sistem Komputer 10, no. 1 (January 4, 2022): 1–11. http://dx.doi.org/10.14710/jtsiskom.2021.13984.
Orasch, Oliver, Noah Weber, Michael Müller, Amir Amanzadi, Chiara Gasbarri, and Christopher Trummer. "Protein–Protein Interaction Prediction for Targeted Protein Degradation." International Journal of Molecular Sciences 23, no. 13 (June 24, 2022): 7033. http://dx.doi.org/10.3390/ijms23137033.
Klein, Mark. "Targeting Protein-Protein Interactions to Inhibit Cyclin-Dependent Kinases." Pharmaceuticals 16, no. 4 (March 31, 2023): 519. http://dx.doi.org/10.3390/ph16040519.
Zhang, Jinxiong, Cheng Zhong, Hai Xiang Lin, and Mian Wang. "Identifying Protein Complexes from Dynamic Temporal Interval Protein-Protein Interaction Networks." BioMed Research International 2019 (August 21, 2019): 1–17. http://dx.doi.org/10.1155/2019/3726721.
Ban Bolly, Hendrikus Masang, Yulius Hermanto, Ahmad Faried, Muhammad Zafrullah Arifin, Trajanus Laurens Yembise, and Firman Fuad Wirakusumah. "Protein-protein Interaction Analysis of Contributing Molecules in Dura mater Healing Process." International Journal of ChemTech Research 13, no. 3 (2020): 73–82. http://dx.doi.org/10.20902/jctr.2019.130302.
Alborzi, Seyed Ziaeddin, Amina Ahmed Nacer, Hiba Najjar, David W. Ritchie, and Marie-Dominique Devignes. "PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions." PLOS Computational Biology 17, no. 8 (August 9, 2021): e1008844. http://dx.doi.org/10.1371/journal.pcbi.1008844.
Dallago, Christian, Tatyana Goldberg, Miguel Angel Andrade-Navarro, Gregorio Alanis-Lobato, and Burkhard Rost. "CellMap visualizes protein-protein interactions and subcellular localization." F1000Research 6 (October 11, 2017): 1824. http://dx.doi.org/10.12688/f1000research.12707.1.
Dallago, Christian, Tatyana Goldberg, Miguel Angel Andrade-Navarro, Gregorio Alanis-Lobato, and Burkhard Rost. "CellMap visualizes protein-protein interactions and subcellular localization." F1000Research 6 (February 1, 2018): 1824. http://dx.doi.org/10.12688/f1000research.12707.2.
Dong, Yun Yuan, and Xian Chun Zhang. "Nonessential-Nonhub Proteins in the Protein-Protein Interaction Network." Advanced Materials Research 934 (May 2014): 159–64. http://dx.doi.org/10.4028/www.scientific.net/amr.934.159.
Kazemi-Pour, Ali, Bahram Goliaei, and Hamid Pezeshk. "Protein Complex Discovery by Interaction Filtering from Protein Interaction Networks Using Mutual Rank Coexpression and Sequence Similarity." BioMed Research International 2015 (2015): 1–7. http://dx.doi.org/10.1155/2015/165186.
Liu, Hongfang, Manabu Torii, Guixian Xu, and Johannes Goll. "Classification Systems for Bacterial Protein-Protein Interaction Document Retrieval." International Journal of Computational Models and Algorithms in Medicine 1, no. 1 (January 2010): 34–44. http://dx.doi.org/10.4018/jcmam.2010072003.
Blaszczak, Ewa, Natalia Lazarewicz, Aswani Sudevan, Robert Wysocki, and Gwenaël Rabut. "Protein-fragment complementation assays for large-scale analysis of protein–protein interactions." Biochemical Society Transactions 49, no. 3 (June 22, 2021): 1337–48. http://dx.doi.org/10.1042/bst20201058.
Idrees, Sobia, Åsa Pérez-Bercoff, and Richard J. Edwards. "SLiM-Enrich: computational assessment of protein–protein interaction data as a source of domain-motif interactions." PeerJ 6 (October 31, 2018): e5858. http://dx.doi.org/10.7717/peerj.5858.
Jung, Dongmin, and Xijin Ge. "PPInfer: a Bioconductor package for inferring functionally related proteins using protein interaction networks." F1000Research 6 (November 7, 2017): 1969. http://dx.doi.org/10.12688/f1000research.12947.1.
Jung, Dongmin, and Xijin Ge. "PPInfer: a Bioconductor package for inferring functionally related proteins using protein interaction networks." F1000Research 6 (December 8, 2017): 1969. http://dx.doi.org/10.12688/f1000research.12947.2.
Jung, Dongmin, and Xijin Ge. "PPInfer: a Bioconductor package for inferring functionally related proteins using protein interaction networks." F1000Research 6 (March 12, 2018): 1969. http://dx.doi.org/10.12688/f1000research.12947.3.
Gopalakrishnan, Sathyanarayanan, and Swaminathan Venkatraman. "Prediction of influential proteins and enzymes of certain diseases using a directed unimodular hypergraph." Mathematical Biosciences and Engineering 21, no. 1 (2023): 325–45. http://dx.doi.org/10.3934/mbe.2024015.
Milano, Marianna, Giuseppe Agapito, and Mario Cannataro. "Challenges and Limitations of Biological Network Analysis." BioTech 11, no. 3 (July 7, 2022): 24. http://dx.doi.org/10.3390/biotech11030024.
Usman, Muhammad Syafiuddin, Wisnu Ananta Kusuma, Farit Mochamad Afendi, and Rudi Heryanto. "Identification of Significant Proteins Associated with Diabetes Mellitus Using Network Analysis of Protein-Protein Interactions." Computer Engineering and Applications Journal 8, no. 1 (February 1, 2019): 41–52. http://dx.doi.org/10.18495/comengapp.v8i1.283.
You, Zhu-Hong, Shuai Li, Xin Gao, Xin Luo, and Zhen Ji. "Large-Scale Protein-Protein Interactions Detection by Integrating Big Biosensing Data with Computational Model." BioMed Research International 2014 (2014): 1–9. http://dx.doi.org/10.1155/2014/598129.
Kosugi, Takatsugu, and Masahito Ohue. "Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions." International Journal of Molecular Sciences 22, no. 20 (October 10, 2021): 10925. http://dx.doi.org/10.3390/ijms222010925.
Winkler, Joanna, Evelien Mylle, Andreas De Meyer, Benjamin Pavie, Julie Merchie, Peter Grones, and Dani�l Van Damme. "Visualizing protein–protein interactions in plants by rapamycin-dependent delocalization." Plant Cell 33, no. 4 (January 25, 2021): 1101–17. http://dx.doi.org/10.1093/plcell/koab004.
El Khamlichi, Chayma, Flora Reverchon-Assadi, Nadège Hervouet-Coste, Lauren Blot, Eric Reiter, and Séverine Morisset-Lopez. "Bioluminescence Resonance Energy Transfer as a Method to Study Protein-Protein Interactions: Application to G Protein Coupled Receptor Biology." Molecules 24, no. 3 (February 1, 2019): 537. http://dx.doi.org/10.3390/molecules24030537.
Gemovic, Branislava, Neven Sumonja, Radoslav Davidovic, Vladimir Perovic, and Nevena Veljkovic. "Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes." Current Medicinal Chemistry 26, no. 21 (September 19, 2019): 3890–910. http://dx.doi.org/10.2174/0929867325666180214113704.
Kang, Jee Eun, Ji Hae Jun, Jung Hyun Kwon, Ju-Hyun Lee, Kidong Hwang, Sungjong Kim, and Namhee Jeong. "Arabidopsis Transcription Regulatory Factor Domain/Domain Interaction Analysis Tool—Liquid/Liquid Phase Separation, Oligomerization, GO Analysis: A Toolkit for Interaction Data-Based Domain Analysis." Genes 14, no. 7 (July 19, 2023): 1476. http://dx.doi.org/10.3390/genes14071476.
Xu, Amy Y., Nicholas J. Clark, Joseph Pollastrini, Maribel Espinoza, Hyo-Jin Kim, Sekhar Kanapuram, Bruce Kerwin, et al. "Effects of Monovalent Salt on Protein-Protein Interactions of Dilute and Concentrated Monoclonal Antibody Formulations." Antibodies 11, no. 2 (March 31, 2022): 24. http://dx.doi.org/10.3390/antib11020024.
IVANOV, ALEXIS S., OKSANA V. GNEDENKO, ANDREY A. MOLNAR, YURY V. MEZENTSEV, ANDREY V. LISITSA, and ALEXANDER I. ARCHAKOV. "PROTEIN–PROTEIN INTERACTIONS AS NEW TARGETS FOR DRUG DESIGN: VIRTUAL AND EXPERIMENTAL APPROACHES." Journal of Bioinformatics and Computational Biology 05, no. 02b (April 2007): 579–92. http://dx.doi.org/10.1142/s0219720007002825.
Goldsmith, Mark, Harto Saarinen, Guillermo García-Pérez, Joonas Malmi, Matteo A. C. Rossi, and Sabrina Maniscalco. "Link Prediction with Continuous-Time Classical and Quantum Walks." Entropy 25, no. 5 (April 28, 2023): 730. http://dx.doi.org/10.3390/e25050730.
Ohue, Masahito, Yuki Kojima, and Takatsugu Kosugi. "Generating Potential Protein-Protein Interaction Inhibitor Molecules Based on Physicochemical Properties." Molecules 28, no. 15 (July 26, 2023): 5652. http://dx.doi.org/10.3390/molecules28155652.
Larsen, Peter E., Frank Collart, and Yang Dai. "Incorporating Network Topology Improves Prediction of Protein Interaction Networks from Transcriptomic Data." International Journal of Knowledge Discovery in Bioinformatics 1, no. 3 (July 2010): 1–19. http://dx.doi.org/10.4018/jkdb.2010070101.
Chasapis, Christos T., Konstantinos Kelaidonis, Harry Ridgway, Vasso Apostolopoulos, and John M. Matsoukas. "The Human Myelin Proteome and Sub-Metalloproteome Interaction Map: Relevance to Myelin-Related Neurological Diseases." Brain Sciences 12, no. 4 (March 24, 2022): 434. http://dx.doi.org/10.3390/brainsci12040434.
Cao, Buwen, Jiawei Luo, Cheng Liang, and Shulin Wang. "Identifying Protein Complexes by Combining Network Topology and Biological Characteristics." Journal of Computational and Theoretical Nanoscience 13, no. 10 (October 1, 2016): 7666–75. http://dx.doi.org/10.1166/jctn.2016.6084.
Dash, Radha Charan, and Kyle Hadden. "Protein–Protein Interactions in Translesion Synthesis." Molecules 26, no. 18 (September 13, 2021): 5544. http://dx.doi.org/10.3390/molecules26185544.
GUI, YUANMIAO, RUJING WANG, YUANYUAN WEI, and XUE WANG. "DNN-PPI: A LARGE-SCALE PREDICTION OF PROTEIN–PROTEIN INTERACTIONS BASED ON DEEP NEURAL NETWORKS." Journal of Biological Systems 27, no. 01 (March 2019): 1–18. http://dx.doi.org/10.1142/s0218339019500013.
Wilson, Jennifer L., Alessio Gravina, and Kevin Grimes. "From random to predictive: a context-specific interaction framework improves selection of drug protein–protein interactions for unknown drug pathways." Integrative Biology 14, no. 1 (January 2022): 13–24. http://dx.doi.org/10.1093/intbio/zyac002.
Hu, Yang, Ying Zhang, Jun Ren, Yadong Wang, Zhenzhen Wang, and Jun Zhang. "Statistical Approaches for the Construction and Interpretation of Human Protein-Protein Interaction Network." BioMed Research International 2016 (2016): 1–7. http://dx.doi.org/10.1155/2016/5313050.
Nezamuldeen, Leena, and Mohsin Saleet Jafri. "Protein–Protein Interaction Network Extraction Using Text Mining Methods Adds Insight into Autism Spectrum Disorder." Biology 12, no. 10 (October 18, 2023): 1344. http://dx.doi.org/10.3390/biology12101344.
Yao, Yu, Xiuquan Du, Yanyu Diao, and Huaixu Zhu. "An integration of deep learning with feature embedding for protein–protein interaction prediction." PeerJ 7 (June 17, 2019): e7126. http://dx.doi.org/10.7717/peerj.7126.
Xu, Da, Hanxiao Xu, Yusen Zhang, Wei Chen, and Rui Gao. "Protein-Protein Interactions Prediction Based on Graph Energy and Protein Sequence Information." Molecules 25, no. 8 (April 16, 2020): 1841. http://dx.doi.org/10.3390/molecules25081841.
Wu, Ke-Jia, Pui-Man Lei, Hao Liu, Chun Wu, Chung-Hang Leung, and Dik-Lung Ma. "Mimicking Strategy for Protein–Protein Interaction Inhibitor Discovery by Virtual Screening." Molecules 24, no. 24 (December 4, 2019): 4428. http://dx.doi.org/10.3390/molecules24244428.
Xu, Yan, Wen Hu, Zhiqiang Chang, Huizi DuanMu, Shanzhen Zhang, Zhenqi Li, Zihui Li, Lili Yu, and Xia Li. "Prediction of human protein–protein interaction by a mixed Bayesian model and its application to exploring underlying cancer-related pathway crosstalk." Journal of The Royal Society Interface 8, no. 57 (October 13, 2010): 555–67. http://dx.doi.org/10.1098/rsif.2010.0384.
Sun, Xiao-Fei, and Salam Pradeep Singh. "Network pharmacology integrated molecular docking demonstrates the therapeutic mode of Panax ginseng against ovarian cancer." Tropical Journal of Pharmaceutical Research 22, no. 3 (April 19, 2023): 589–96. http://dx.doi.org/10.4314/tjpr.v22i3.16.
Wang, Lei, Lixiao Zhang, Li Li, Jingsheng Jiang, Zhen Zheng, Jialin Shang, Chengxiang Wang, et al. "Small-molecule inhibitor targeting the Hsp90-Cdc37 protein-protein interaction in colorectal cancer." Science Advances 5, no. 9 (September 2019): eaax2277. http://dx.doi.org/10.1126/sciadv.aax2277.
Mewara, Bhawna, Gunjan Sahni, Soniya Lalwani, and Rajesh Kumar. "CAA-PPI: A Computational Feature Design to Predict Protein–Protein Interactions Using Different Encoding Strategies." AI 4, no. 2 (April 28, 2023): 385–400. http://dx.doi.org/10.3390/ai4020020.