Дисертації з теми "Plant mating systems"

Thesis (Ph.D.)--Indiana University, Dept. of Biology, 2006.
"Title from dissertation home page (viewed July 11, 2007)." Source: Dissertation Abstracts International, Volume: 67-08, Section: B, page: 4208. Advier: Keith Clay.

Thesis (Ph. D.)--University of Missouri-Columbia, 2008.
The entire dissertation/thesis text is included in the research.pdf file; the official abstract appears in the short.pdf file (which also appears in the research.pdf); a non-technical general description, or public abstract, appears in the public.pdf file. Title from title screen of research.pdf file (viewed on June 4, 2009) Vita. Includes bibliographical references.

Reproductive studies in invasive plants are necessary for an understanding of their potential to establish and spread in foreign environments. Elaeagnus umbellata Thunb. (autumn olive) is an invasive woody shrub that flowers early in the spring and is often noted for its abundant fruit set. This study examined the reproductive biology of E. umbellata in Illinois, where it is highly invasive. Hand-pollination experiments were performed to determine the breeding system of E. umbellata, and floral visitors were collected to determine its pollinators. Experiments showed that E. umbellata is a predominantly outcrossing species with a self-incompatible breeding system. However, individual variation was detected in several reproductive characteristics. Pollen tube analyses revealed that a small percentage of individuals allow successful self-pollen tube growth, and self-fruit set resulting from automatic self-pollination (autogamy) was relatively high in a few plants. Automatic self-pollination is possible because the male and female parts of flowers mature sychronously, but the likelihood of autogamy may vary among individuals due to variability in the spatial separation of male and female parts (herkogamy). Variability in the incompatibility system and the level of herkogamy may impact the outcrossing rates and reproductive success of individuals. The majority of floral visitors to E. umbellata were generalist pollinators. Frequently visiting bees included small and large species such as native Andrena spp., Augochlorella aurata, Bombus spp., Ceratina calcarata, Xylocopa virginica, and the introduced Apis mellifera. Bombylius major (large bee fly) and the moth Mythimna unipuncta (armyworm) were also frequent visitors. Most of the above insect taxa are pollinators of E. umbellata based on analysis of pollen on insect bodies. E. umbellata is likely to achieve its abundant fruit set where these common pollinators and other E. umbellata are present. However, in my study sites, many individuals experienced low fruit set on branches that were open to pollinator visitation, suggesting pollen limitation may be common in some years and at certain sites. The discovery of autogamous individuals demonstrates that some E. umbellata individuals may be able to establish and spread even when mates or pollinators are limiting.

A major challenge in plant ecology is in understanding how species strategies mediate interactions between the environment and fitness. Variation in niche strategies that affect phenological, physiological, and reproductive traits will allow species to partition resources differently in space and time, allowing for coexistence of many species and strategies within a community. How species differentially respond to variable environments will ultimately influence their population dynamics and geographic distribution. This dissertation approaches this topic from two perspectives: (a) examining the interaction between biogeography and variable demographic strategies in desert annual plants, and (b) examining the costs and benefits of contrasting reproductive strategies in co-occurring selfing and outcrossing desert annuals. Firstly, I tested the abundant center model to determine the role of range position on plant population dynamics. I examined how the geographic and climatic position of 13 desert annuals found at a common location, the Desert Laboratory at Tumamoc Hill in Tucson, Arizona, related to their demography over a 25-year time span. I found that species for which the Desert Laboratory was close to the center of their geographic range have less variable long-term survival and fecundity compared to species for which the Desert Laboratory was further from the center of their range. Secondly, I studied how related species with contrasting mating systems respond to variable environments to affect plant performance. In a three-year field study I investigated how inter-annual variation in plant reproductive phenology affects synchrony with pollinators and herbivores. Since selfing species are guaranteed to reproduce in the absence of pollinators, seasonal and annual variation in phenology resulted in less variable plant reproductive success compared to outcrossing species. Greater variation in reproduction in outcrossing species resulted from asynchrony in some years between plants and pollinators. In a greenhouse study examining the interaction between mating system and drought, I found that the physiological functioning and survival of outcrossing species was more strongly negatively affected by drought conditions, suggesting that selfing species have an advantage in more arid environments. These studies demonstrate how plant reproductive and physiological strategies can play a critical role in influencing fitness, population dynamics and geographic distribution.

Buzz-pollination or pollination by vibration occurs in several families of angiosperms including some important commercial crops such as potatoes and tomatoes. Buzz-pollinated flowers release pollen via small pores or slits on the anther’s tip that require the use of vibrations by specialized pollinators, usually bees, to remove the pollen. Some buzz-pollinated species have elaborate floral morphologies including dimorphic anthers within the same flower (heteranthery), and mirror-image flowers (enantiostyly) where the style is reciprocally deflected to either the left or right side of the floral axis. The complex floral morphology and buzz-pollination syndrome seen in these species require a close physical interaction between the sexual organs of the flowers and the bodies of insect visitors. Despite the broad taxonomic distribution of buzz-pollination in angiosperms (more than 60 families are buzz-pollinated) relatively few studies have described the pollination ecology of these species under natural conditions. The main goal of the present work was to characterize the pollination biology, mating patterns and antagonistic interactions (e.g. pollen theft) in natural populations of a buzz-pollinated species. For this purpose, I studied Solanum rostratum (Solanaceae), a buzz-pollinated, self-compatible, annual weed with complex floral morphology (both enantiostylous and heterantherous flowers). This species usually grows in disturbed areas in its native range (Mexico) and has become invasive around the world. My research was divided into three components. First, I characterized the pollination and reproductive biology of natural populations in Mexico. I performed floral manipulations in six natural populations of S. rostratum to estimate fruit and seed set. In three of these populations, I carried out 115 hours of pollinator observations and quantified the incidence of pollinators versus pollen thieves. I also measured the efficiency of a subset of floral visitors in triggering fruit set after single visits. Second, I investigated whether morphological correspondence between the size of the pollinator’s body and floral morphology influences pollen transfer. In experimental arrays, I exposed flowers of S. rostratum that varied in the distance between their sexual organs, to bumblebees (Bombus terrestris) of different sizes, and recorded pollen deposition and fruit and seed production. Finally, I determined the mating system (i.e. the proportion of self- and cross-fertilized offspring) of natural populations in Mexico and of introduced populations in the United States of America, using newly developed microsatellite markers. My results show that S. rostratum is visited by a wide range of bees of different sizes (0.9–9.8 mm in thorax diameter), but that only a small subset of these visitors act as pollinators. Most visitors act as pollen thieves, consuming pollen while effecting little or no pollination. I also found that correspondence between a pollinator’s size and the separation of the S. rostratum sexual organs determines pollen deposition and fruit production; pollen deposition decreased when bees were small relative to the distance between the sexual organs visited the flowers. My genetic analyses show that natural populations of S. rostratum maintain a relatively high outcrossing rate (tm = 0.75 ± 0.03) across the native and introduced range. Furthermore, genetic diversity is reduced in invasive populations, but this is not accompanied by changes in mating system. My work shows that the morphological fit between the pollinator and the flowers is important in determining the dynamics of pollen transfer and fruit production in this buzz-pollinated plant. Distinguishing between pollinators and pollen thieves in buzz-pollinated plants is essential for understanding the evolution of buzz-pollination, as pollen theft could be a major selective force for these species.

Unequal sex ratios are widespread in dioecious plants and understanding their cause is important to understanding fundamental aspects of their population dynamics, and yet what causes biased sex ratios in plants is still poorly understood. Competition experiments have been used in plants to predict the outcome of species interactions, but they have rarely been used to help explain sex ratio bias. This study used a response surface competition design to measure the relative competitive abilities of the sexes of the bryophyte Marchantia inflexa (a thallus liverwort of Marchantiaceae) to predict the outcome of competition before the onset of sexual reproductive structures. In bryophytes, dioecy and sex ratio bias is especially common, making them effective organisms for studying sex ratio bias. Given the frequency of female bias in bryophytes, the hypothesis was that females will show a higher competitive ability relative to males. The experiment was conducted in greenhouse conditions at several densities and proportions over the course of seven months. As individuals grew and formed clumps, identities were tracked, and growth measurements were made using photographs and computer imaging software. Both sexes grew on average 41% more with the opposite sex relative to their single-sex cultures. A model predicting future sex ratios showed coexistence between the sexes and predicted a male biased sex ratio of 3.2 males to 1 female. A trade-off was observed for males where single-sex cultures contained more asexual structures than mixed-sex cultures and the reverse for growth rate. Higher levels of asexual reproduction in males in single-sex cultures might be selected for to increase male dispersal for a higher probability of encountering females. This pattern was not found for females. The overyielding results suggest an interaction effect may exist due to niche differentiation between the sexes. In addition, the results suggest that in some dioecious plants a change in sex ratio can occur before differences in their allocation to sexual reproduction.

Sporophytic self-incompatibility is a genetically controlled inbreeding prevention mechanism, which is prevalent in the Brassicaceae, and has been reported in a variety of high profile species. Despite the benefits of preventing self-fertilization in terms of maintaining genetic diversity, variation in the strength of self-incompatibility (SI) has also been well documented, as has a shift from SI to inbreeding at the species and population levels. An important underlying driving force behind a switch to inbreeding could be the reproductive assurance provided by not requiring an unrelated mating partner for sexual reproduction. This could be beneficial for a species undergoing rapid colonization, because only a single individual is required to begin a sexually reproducing colony after a long-distance dispersal event (Baker’s law), which is characteristic of the plight of many species after the last glacial maxima. The purpose of my thesis was to evaluate the effects of variation in mating system on post-glacial colonization, using two model species that show intraspecific variation in outcrossing rates. The first, Arabidopsis lyrata, represents an excellent model system to assess post-glacial colonization history because it exhibits broad geographical and ecological ranges, and has a recently completed genome sequence. In North America, A. lyrata has further benefits as a model system, namely it exhibits variation in the strength of SI and shift to SC at the population level, which is not observed in Europe. The second species is Arabis alpina, which also appears to show population level variation in mating system strength in Europe based on variation in FIS. This has been putatively linked to colonization history after the last glacial maxima. Unlike in A. lyrata however, its mating system has not been characterized. Mating system delimitation in A. alpina has the potential to aid the interpretation of patterns of ecological genetic diversity, which may in part be influenced by local or regional stochastic changes to mating system variation. My first objective was to identify if A. alpina had a functioning SI system based on both self-fertilization experiments, and allozyme based outcrossing rate estimations. I found strong evidence to suggest the presence of a functional barrier preventing self-fertilization in A. alpina. I identified multiple putative SRK alleles (the female determinant of self-incompatibility), suggesting that the same type of sporophytic system seen in other Brassicaceae species governs SI in this species. I also demonstrated linkage of SI phenotype to some SRK genotypes by diallel crosses, strengthening the case for a functional SI system in this species. Further to this I demonstrate variation in mating system strength between populations, and autonomous inbreeding was seen in a single population. I note that the potential changes in SI status coincide with areas suspected to differ in post-glacial history based on allozyme diversity reported in previous work. While the number of populations sampled was insufficient to link mating system variation to colonization history in A. alpina, mating system variation has been more extensively characterized in North American A. lyrata, allowing more fine-scale resolution of population structure and post-glacial colonization history; an underlying objective of my thesis. I used three molecular marker systems (cpDNA, nuclear micro-satellites and allozymes) to assess these phylogeographic questions, and present evidence of three putative colonization routes for the Great Lakes region. These putative routes are congruent with those described in other species, particularly amphibians and reptiles. Further to this I considered the possible location of glacial refugia, and likelihood that plant taxa may have survived during Pleistocene glaciation in close proximity to the Laurentide Ice Sheet, particularly in Illinois, Indiana, Wisconsin and Minnesota, which may also be true for some animal taxa. I examined patterns of population structure, and scenarios that may have influenced this, and present support for the previously documented theory of multiple breakdowns in SI in this geographic region. My final objective was to assess the suitability of the three marker systems for phylogeographic reconstruction in A. lyrata, by comparing and contrasting the patterns of population structure, and colonization history suggested by each system. Levels of variation observed between the marker systems used varied, and I explored how these patterns complemented and contradicted each other. As expected, the nuclear micro-satellite loci represent the system with the greatest genetic diversity, but do not allow meaningful conclusions to be drawn regarding colonization history because of low levels of shared variation between populations. Conversely, the allozyme loci presented much lower levels of genetic diversity, but support population structuring conclusions based on both cpDNA data and previous studies of A. lyrata and other taxa in this area. The cpDNA marker (trnF) represents a somewhat contentious system to use for phylogeography in A. lyrata, as it contains a tandem array of highly variable, but complexly evolving duplications (pseudogenes). I concluded that these structural changes could be phylogenetically informative when pseudogene evolutionary relationships can be resolved This was based on variation in patterns of diversity, and the subsequent population structure change that occurred when using different methods of assessing trnF variation.

Este trabalho teve por objetivo caracterizar e comparar a estrutura genética de sete populações de cupuaçuzeiro, Theobroma grandiflorum (Willd. ex Spreng.) Schum., uma fruteira nativa da Amazônia brasileira, utilizando marcadores microssatélites e descritores botânico-agronômicos. Visou também conhecer, preliminarmente, o sistema reprodutivo do cupuaçuzeiro. A estrutura genética das sete populações, sendo três populações naturais, coletadas na suposta área de máxima diversidade da espécie, três populações estabelecidas em Banco Ativo de Germoplasma (BAG), e uma população coletada em plantios comerciais do município de Tomé açu - PA, foi analisada com auxílio de marcadores microssatélites. Foi observada alta variabilidade genética na espécie, ressaltado pelo elevado número de alelos por loco, alto nível de heterozigosidade e divergência entre as populações. A divergência foi mais acentuada entre as populações naturais, em comparação com as populações do Banco de Germoplasma. Essa divergência pode indicar um processo preliminar de diferenciação. Porém, foi mais acentuada entre as populações oriundas de Tucuruí e Nova Ipixuna, corroborando com as indicações que consideram essa região como o centro de máxima diversidade de T. grandiflorum. Estes resultados sugerem, como estratégia de conservação in situ, a necessidade de definição de mais de um local para reserva genética, bem como, em relação a conservação ex situ, as coletas devem ser realizadas em vários locais. A elevada diversidade genética observada nos plantios comerciais, permite recomendar essas plantações como uma fonte alternativa de genes e genótipos ao programa de melhoramento de T. grandiflorum. No BAG foi observada baixa divergência genética entre as populações, sendo que, a maior parte da variabilidade genética encontrava-se dentro das populações. Essa caracterização foi complementada com o emprego de descritores botânico-agronômicos, quando foi observada grande variabilidade para a maioria dos descritores empregados. Houve necessidade, inicialmente, de selecionar dentre as 53 variáveis, aquelas que melhor se prestavam para a caracterização dos acessos. Empregando análises univariada e multivariada por componentes principais, foi possível descartar 64% das variáveis iniciais, sendo sugerida uma lista mínima de 19 descritores para o cupuaçuzeiro. Com base nessa lista e o emprego da distância Euclideana média, foi obtida uma matriz de dissimilaridade entre os 31 acessos avaliados. Esses acessos foram agrupados pelo método de Tocher e UPGMA, tendo sido obtidos seis grupos de similaridade. A comparação entre as duas caracterizações realizadas no BAG, revelou uma correlação positiva e significativa entre distâncias genéticas e fenotípicas. Preliminarmente foi estudado o sistema de reprodução do cupuaçuzeiro, numa população natural de Nova Ipixuna – PA, sendo utilizadas oito progênies de polinização aberta, com dez indivíduos e oito locos microssatélites polimórficos. Baseado na estimativa da taxa de cruzamento multilocos ( $ t m =1,0) e individual por planta materna, o estudo nessa população sugere que o T. grandiflorum é uma espécie predominantemente alógama, com uma pequena percentagem (5,4%) de cruzamentos entre parentes. Esse fator tem implicações importantes nas estratégias de conservação in situ e na utilização de progênies oriundas de polinização aberta nos programas de melhoramento.
This work had the objectives to characterize and compare the genetic structure of seven populations of cupuassu, Theobroma grandiflorum (Willd. ex Spreng.) Schum., a fruit tree native to the Brazilian Amazon using microsatellite markers and botanic-agronomic descriptors; and to investigate the cupuassu mating system. The genetic structure of seven populations of cupuassu, with three originally collected at the putative center of maximum diversity of the species; three populations established at the active germplasm collection (BAG); and one population colected from commercial plantings were analyzed using microsatellite markers. High genetic variability was observed for the species, demonstrated by the elevated number of alleles per locus; high heterozigosity and divergence between populations. The divergence was more noticeable among natural populations than among populations from the germplasm collection. This divergence might indicate a preliminary process of diversification. However, it was more pronounced between the populations from Tucuruí and Nova Ipixuna, corroborating indications that this region is considered the center of maximum diversity of T. grandiflorum. These results suggested as strategy for in situ conservation, the requirement to define more than one site for genetic reserves, large enough to maintain rare alleles in the medium- to long term. For ex situ conservation, sample collection must be conducted in many sites, with low intensity in each site, due to the existing variability witihin population. The high genetic diversity observed in commercail plantings allow to recommend these areas as an alternative source for genes and genotypes for the breeding program of T. grandiflorum. The characterization of the germplasm populations was complemented using botanic-agronomic descriptors. The large observed variability for most of the evaluated descriptors indicated that the germplasm collection contained high phenotypic diversity. Initially, it was necessary to select from the 53 evaluated variables, those most suitable for characterization of the accessions. Using univariate and multivariate analyses of principal components, it was possible to discard 64% of the initial variables, and a minimum descriptor list with 19 traits was proposed for cupuassu. Based on the minimum descriptor list, a matrix of dissimilarity was constructed using Euclidean distances. The 31 evaluated cupuassu accessions were grouped using Tocher and UPGMA, into six groups. The comparison betwen the molecular and phenotypic characterization revealed a significant and positive correlation between the genetic and phenotypic distances. The mating system fo cupuassu was studied, based on a natural population from Nova Ipixuna – PA, using eight progenies derived from open-pollinated pods with ten individuals each and eight polymorphic microsatellite loci. Based on the estimation of the multilocus outcrossing rate ( $ t m =1,0) and individual outcrossing rate ( $ t =1.0), the results from this population suggested that T. grandiflorum is a predominatly outbreeding species, with a small percentage (5,4%) of biparental inbreeding. These results have important implications on the in situ conservation strategies and on the use of open-pollinated progenies in breeding programs.

Fragmentation of natural vegetation is currently one of the largest threats to biodiversity. Within the southwest Australia global biodiversity hotspot, the Swan Coastal Plain was historically cleared for agriculture and forestry and is now experiencing extensive land clearing for urbanisation. The wavy-leaved smokebush Conospermum undulatum is a rare species endemic to the Swan Coastal Plain, and its future persistence is threatened by urban expansion. Throughout this research, I investigated the pollination ecology of this species and found a specific association between C. undulatum and native bees for pollination. I also demonstrated that C. undulatum has evolved pollen with resistance to the usually negative effect of ant secretions on pollen grains, with ants providing effective pollination services to this threatened species. Native pollinators were drastically reduced in small populations, and urbanisation limited the movement of pollen across built-up areas surrounding remnant bushland. This lack of both pollinators and inter-population pollen flow is severely limiting the production of healthy seeds in smaller populations. I then performed molecular investigations combined with an ecological characterisation of the recently fragmented distribution range of C. undulatum to quantify the genetic structure and levels of genetic diversity across the entire distribution of the species. Despite the current intense fragmentation, I found levels of genetic diversity similar across populations and a weak spatial genetic structure. Since habitat fragmentation is recent and many adult plants are likely to be several decades old, they mainly reflect pre-fragmentation conditions. Therefore, the detailed characterization of fragmentation over time has shown how the low levels of genetic fixation can be attributed to pervasive gene flow through the pre-fragmented landscape, which mostly influenced the current adult cohort. Early signals of the negative effects of habitat fragmentation were found during my study of contemporary gene flow through the paternity assignment of seedlings sampled at the end of the 2017 flowering season. Although gametes of C. undulatum could flow unimpeded through large expanses of unfragmented bushland, inter-population pollen flow was non-existent between fragments surrounded by built-up areas. This study supports the need for an understanding of contemporary mating patterns to detect early signals of gene flow failure in fragmented remnants. Lastly, I found evidence for hybridisation occurring at the edge of the distribution of C. undulatum between this rare and threatened plant and two other related species. This adds to the threats posed by habitat fragmentation to the conservation of C. undulatum. My research highlighted the importance of native pollinators for plants that coevolved with them and adds to the limited research on the effect of habitat fragmentation on native plants that rely exclusively on native insects for pollination. Such pollinators appeared unable to maintain an adequate inter- population pollen flow in heavily fragmented landscapes. Therefore, the often negative effects of habitat fragmentation can be exacerbated in small and isolated populations of plants that rely on species-specific pollinators for sexual reproduction. Outcomes of my research will inform recovery plans to enhance the future persistence of C. undulatum over the long term.

Many different approaches have been taken towards solving the stereo correspondence problem and great progress has been made within the field during the last decade. This is mainly thanks to newly evolved global optimization techniques and better ways to compute pixel dissimilarity between views. The most successful algorithms are based on approaches that explicitly model smoothness assumptions made about the physical world, with image segmentation and plane fitting being two frequently used techniques.

Within the project, a survey of state of the art stereo algorithms was conducted and the theory behind them is explained. Techniques found interesting were implemented for experimental trials and an algorithm aiming to achieve state of the art performance was implemented and evaluated. For several cases, state of the art performance was reached.

To keep down the computational complexity, an algorithm relying on local winner-take-all optimization, image segmentation and plane fitting was compared against minimizing a global energy function formulated on pixel level. Experiments show that the local approach in several cases can match the global approach, but that problems sometimes arise – especially when large areas that lack texture are present. Such problematic areas are better handled by the explicit modeling of smoothness in global energy minimization.

Lastly, disparity estimation for image sequences was explored and some ideas on how to use temporal information were implemented and tried. The ideas mainly relied on motion detection to determine parts that are static in a sequence of frames. Stereo correspondence for sequences is a rather new research field, and there is still a lot of work to be made.

Major transitions between vertebrate and insect pollination systems have occurred many times during the angiosperm radiation and are associated with evolutionary modifications in floral traits. In the large ancestrally bird-pollinated African genus Protea (Proteaceae), an evolutionary shift from bird to insect pollination in the genus is suggested by the fruity diurnal scent of flowers in a recently evolved clade of grassland species. In this study, I confirm that four of these grassland Protea species have mixed mating systems and are indeed insect pollinated, and furthermore demonstrate the functional significance of their floral presentation and scent chemistry for attraction of pollinators, specifically cetoniine beetles. The study species, Protea caffra, Protea dracomontana, Protea simplex and Protea welwitschii, have colourful bowl-shaped inflorescences that produce copious amounts of pollen and dilute, xylose-rich nectar. Cetoniine beetles were found to be the most suitable pollinators due to their abundance, size, relatively pure Protea pollen loads, and their preference for the fruity scent and low growth form of these scented Protea species, as demonstrated by choice experiments in which inflorescences were offered at either end of a y-maze or at various heights above the ground, respectively. Bagging and hand pollinations revealed that these Protea species are self-compatible and capable of autonomous selfing. Self progeny of P. caffra were as vigorous as cross progeny in terms of germinability and survivorship to two months. Vertebrate-excluded and open-pollinated inflorescences yielded similar seed numbers for all species. Supplemental hand-pollinations, however, failed to increase seed set substantially, an indication of resource limitation. Outcrossing rates estimated using polymorphisms at eight allozyme loci in progeny from vertebrate-excluded and open-pollinated treatments of P. caffra were no different (t=0.59), indicating outcrossing by insects and an equal or insubstantial contribution from bird pollinators. The fruity-sweet scents of these species were more complex, with higher whole flower and mass-specific emission rates, than those in eight bird-pollinated congenerics. The overall floral scent is shown to be a blend of emissions from various plant parts, especially nectar. Electroantennography (EAG) revealed that the generalist pollinator Atrichelaphinis tigrina responds to a variety of volatile compounds found in fruity Protea scents. Field trapping confirmed that this cetoniine beetle is strongly attracted to ß-linalool (up to 60% of scent profile) and methyl benzoate. In conclusion, this study demonstrates the evolution of beetle pollination and mixed mating systems in a grassland clade of Protea. Volatile compounds that make up the unique (within Protea) fruity scent of the study species are shown to attract beetles, and the emission of large amounts of these compounds was probably a key step in the transition from bird to insect pollination in Protea.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2012.

Fragmented tree populations are not expected to be as susceptible to small population paradigm effects (e.g. genetic drift) that generally dominate conservation genetics and restoration as many other taxa. The reasons for this are that trees tend to (1) undergo regular far-reaching gene flow, even in fragmented landscapes, (2) have many overlapping generations and (3) be long lived relative to when most habitat fragmentation occurred. These traits result in tree populations having great genetic inertia and thus they tend to maintain genetic diversity (as measured by numbers of alleles) despite significant habitat fragmentation. However, trees are not resistant to changes in the genetic diversity of their progeny (as measured by observed heterozygosity) as a result of habitat fragmentation. Habitat fragmentation can alter the mating patterns of individual trees by changing pollination dynamics (e.g. levels of selfing, pollen diversity) and these mating patterns directly influence the genetic makeup of progeny. Tree progeny are predicted to be particularly sensitive to mating pattern changes of their maternal plant since most tree species predominantly outcross, leading them to accumulate more genetic load than plants that regularly selfpollinate. Consequently, reduced pollen diversity is likely to reduce pollen competition or reduce heterosis effects within the observed generation; more selfing is expected to increase inbreeding depression. Furthermore, for trees, these patterns remain to be examined in an experimental or quantitative way. Furthermore, discussions of these trends have often relied on theoretical arguments, rather than empirical data, paving the way for experimental investigations. Consequently, it was the primary goal of this thesis to examine some of these gaps in knowledge in an experimental and quantitative way. Specifically the aims of this thesis were to: 1. Examine and quantify the impact of fragmentation and tree density on mating patterns, and how this may vary with pollinators of differing mobility 2. Determine the theoretical expectations and perform empirical tests of mating pattern-fitness relationships in trees 3. Explore the plant genetic resource management implications that arise from the observations in aims 1 and 2 In general the results showed that stands of trees that have experienced habitat fragmentation or are present in lower densities express a quantifiable negative shift in their mating patterns (i.e. they tend to self more and receive less pollen diversity). More mobile pollinators appear to buffer trees from these negative shifts in their mating patterns. I present a theoretical guide to the mating pattern-fitness relationships in terms of habitat fragmentation. I found that an increase in selfing and a decrease in pollen diversity are both important factors that could be quantified as impacting on fitness of established seedlings. Taken together, these findings suggest that seeds collected from larger, less fragmented and higher density stands have higher fitness. Consequently, collecting seeds from these stands should lead to better outcomes of ex situ and in situ conservation, restoration and revegetation plantings.
Thesis (Ph.D.) -- University of Adelaide, School of Earth and Environmental Sciences, 2013

Meadowfoam (Limnanthes alba Bentham; Order: Brassicales; Family: Limnanthaceae) is a self-compatible, predominantly allogamous, insect pollinated species. Meadowfoam oil is a source of novel unsaturated very-long-chain (VLC) seed oils (C������ and C������) with low concentrations of saturated fatty acids (typically less than 2%) and outstanding oxidative stability. Here we report the development of 389 SSR markers for meadowfoam. All the 389 SSRs were screened on 14 meadowfoam germplasm accessions to assess their utility and efficiency. Ninety-six percent of the SSR markers (373 out of 389) were polymorphic among the 14-germplasm accessions (from nine taxa) with a mean heterozygosity of 0.63. We also report that the physical size of the meadowfoam genome was estimated to be 5.52 pg using flow cytometry; thus, the meadowfoam genome is ca. 16 times larger than the Arabidopsis genome. Karyotype analyses revealed that the meadowfoam genome is made up of two metacentric and three submetacentric chromosomes. Meadowfoam has two pairs of chromosomes with subterminal nucleolar organizing regions (NOR's). A genetic map comprised of 84 SSR loci dispersed among five linkage groups with 11 to 22 SSR loci per linkage (6 SSR loci segregated independently) was constructed. The map was 988.7 cM long with a mean density of 11.8 cM and minimal clustering of loci. A total of 20 quantitative trait loci (QTL) were identified for five mating system characters in meadowfoam, using the SSR linkage map of meadowfoam. Individual QTL for mating system traits peta1 area (pa), seeds per plant (spp) and seeds per flower (spf)I account for up to 20% of the backcross phenotypic variance, with most traits showing QTL effects of 5-15%. The QTL for protandry and chiasma frequency were adjacent to the QTL for spp and spf. This study has provided evidence that the correlation between the chiasma frequency and the type of mating system is not a direct developmental relationship between these factors, but is due to a selective advantage of the combination of the characters found. The speculation that the genetic factors underlying chiasma frequency and autonomous seed set have co-evolved during evolution negates the self-fertilization as an "evolutionary dead end".
Graduation date: 2002

Yes
A crucial step in the transition from outcrossing to self-fertilization is the loss of genetic self-incompatibility (SI). In the Brassicaceae, SI involves the interaction of female and male speci-ficity components, encoded by the genesSRKandSCRat the self-incompatibility locus (S-lo-cus). Theory predicts thatS-linked mutations, and especially dominant mutations inSCR, arelikely to contribute to loss of SI. However, few studies have investigated the contribution ofdominant mutations to loss of SI in wild plant species. Here, we investigate the genetic basis of loss of SI in the self-fertilizing crucifer speciesCapsella orientalis, by combining genetic mapping, long-read sequencing of completeS-hap-lotypes, gene expression analyses and controlled crosses. We show that loss of SI inC. orientalisoccurred<2.6 Mya and maps as a dominant trait totheS-locus. We identify a fixed frameshift deletion in the male specificity geneSCRand con-firm loss of male SI specificity. We further identify anS-linked small RNA that is predicted tocause dominance of self-compatibility. Our results agree with predictions on the contribution of dominantS-linked mutations toloss of SI, and thus provide new insights into the molecular basis of mating system transitions.
Work at Uppsala Genome Center is funded by 550 RFI / VR and Science for Life Laboratory, Sweden. The SNP&SEQ Platform is supported by 551 the Swedish Research Council and the Knut and Alice Wallenberg Foundation. V.C. 552 acknowledges support by a grant from the European Research Council (NOVEL project, 553 grant #648321). The authors thank the French Ministère de l’Enseignement Supérieur et de la 554 Recherche, the Hauts de France Region and the European Funds for Regional Economical 555 Development for their financial support to this project. This work was supported by a grant 556 from the Swedish Research Council (grant #D0432001) and by a grant from the Science for 557 Life Laboratory, Swedish Biodiversity Program to T.S. The Swedish Biodiversity Program is 558 supported by the Knut and Alice Wallenberg Foundation.

There are few other structures in nature from which evolution has generated such wide diversity as the flower or inflorescence, and this diversity is commonly attributed to the influence of their animal visitors. By outsourcing their mate choice to pollinators, plants have left themselves - and especially their flowers - subject to the selective forces imposed by the behaviour, cognition and perception of the pollinators that serve them. The orchids provide some of the most remarkable and extreme examples of adaptations to specific animal pollinators. Perhaps one of the most peculiar of these strategies is sexual deception, whereby male insects are lured to the flower by mimicry of the female sex pheromone. This seemingly unlikely strategy has evolved multiple times independently on different continents in different parts of the orchid phylogeny which raises the question of what adaptive advantages might underlie such a strategy. This multidisciplinary thesis studies gene flow and pollinator behaviour in two sympatric sexually deceptive orchids in the genus Chiloglottis. The two species attract their specific wasp pollinators through emission of distinct species - specific semiochemicals. Since floral volatiles play a pre-eminent role in pollinator attraction, Chiloglottis provides an excellent case study for examining the interaction between floral volatile chemistry, pollinator behaviour and the evolutionary dynamics of populations. The thesis begins with a review of floral volatiles and their role in pollinator attraction and plant speciation. The literature is used to develop a research framework of six testable hypotheses under which we might productively explore the influence of floral volatiles on plant evolution. These hypotheses are then explored in the study system over the following chapters. A study of pollinator specificity, neutral genetic differentiation and floral chemistry demonstrates that the chemical mimicry crucial to sexual deception is responsible for reproductive isolation and potentially even speciation. Mating system and paternity analysis provide the first genetic evidence for multiple paternity in orchid broods. Extensive outcrossing is found to predominate and paternity assignment shows evidence for long distance pollen flow supporting the hypothesis that sexual deception promotes outcrossing and so minimizes the potentially deleterious effects of selfing. Lastly, an innovative new method is developed for tracking wasps in the field. Application of this technique to a population of orchid-pollinating wasps reveals detailed information about their movement and mating behaviour. The findings support the conclusion that sexual deception is a superb adaptive solution to the problem flowers face of simultaneously attracting pollinators and persuading them to leave quickly.