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Статті в журналах з теми "Plant biogeochemistry"

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Автор: Grafiati

Опубліковано: 10 грудня 2022

Оновлено: 28 січня 2023

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1

Mackowiak, C. L., P. R. Grossl, and B. G. Bugbee. "Biogeochemistry of Fluoride in a Plant-Solution System." Journal of Environmental Quality 32, no. 6 (November 2003): 2230–37. http://dx.doi.org/10.2134/jeq2003.2230.

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2

Murray, Andrew P., Dianne Edwards, Janet M. Hope, Christopher J. Boreham, Webber E. Booth, Robert A. Alexander, and Roger E. Summons. "Carbon isotope biogeochemistry of plant resins and derived hydrocarbons." Organic Geochemistry 29, no. 5-7 (November 1998): 1199–214. http://dx.doi.org/10.1016/s0146-6380(98)00126-0.

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3

Hinsinger, Philippe, A. Glyn Bengough, Doris Vetterlein, and Iain M. Young. "Rhizosphere: biophysics, biogeochemistry and ecological relevance." Plant and Soil 321, no. 1-2 (January 21, 2009): 117–52. http://dx.doi.org/10.1007/s11104-008-9885-9.

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4

Poulter, B., P. Ciais, E. Hodson, H. Lischke, F. Maignan, S. Plummer, and N. E. Zimmermann. "Plant functional type mapping for earth system models." Geoscientific Model Development 4, no. 4 (November 16, 2011): 993–1010. http://dx.doi.org/10.5194/gmd-4-993-2011.

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Abstract. The sensitivity of global carbon and water cycling to climate variability is coupled directly to land cover and the distribution of vegetation. To investigate biogeochemistry-climate interactions, earth system models require a representation of vegetation distributions that are either prescribed from remote sensing data or simulated via biogeography models. However, the abstraction of earth system state variables in models means that data products derived from remote sensing need to be post-processed for model-data assimilation. Dynamic global vegetation models (DGVM) rely on the concept of plant functional types (PFT) to group shared traits of thousands of plant species into usually only 10–20 classes. Available databases of observed PFT distributions must be relevant to existing satellite sensors and their derived products, and to the present day distribution of managed lands. Here, we develop four PFT datasets based on land-cover information from three satellite sensors (EOS-MODIS 1 km and 0.5 km, SPOT4-VEGETATION 1 km, and ENVISAT-MERIS 0.3 km spatial resolution) that are merged with spatially-consistent Köppen-Geiger climate zones. Using a beta (ß) diversity metric to assess reclassification similarity, we find that the greatest uncertainty in PFT classifications occur most frequently between cropland and grassland categories, and in dryland systems between shrubland, grassland and forest categories because of differences in the minimum threshold required for forest cover. The biogeography-biogeochemistry DGVM, LPJmL, is used in diagnostic mode with the four PFT datasets prescribed to quantify the effect of land-cover uncertainty on climatic sensitivity of gross primary productivity (GPP) and transpiration fluxes. Our results show that land-cover uncertainty has large effects in arid regions, contributing up to 30% (20%) uncertainty in the sensitivity of GPP (transpiration) to precipitation. The availability of PFT datasets that are consistent with current satellite products and adapted for earth system models is an important component for reducing the uncertainty of terrestrial biogeochemistry to climate variability.

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5

Poulter, B., P. Ciais, E. Hodson, H. Lischke, F. Maignan, S. Plummer, and N. E. Zimmermann. "Plant functional type mapping for earth system models." Geoscientific Model Development Discussions 4, no. 3 (August 26, 2011): 2081–121. http://dx.doi.org/10.5194/gmdd-4-2081-2011.

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Abstract. The sensitivity of global carbon and water cycling to climate variability is coupled directly to land cover and the distribution of vegetation. To investigate biogeochemistry-climate interactions, earth system models require a representation of vegetation distributions that are either prescribed from remote sensing data or simulated via biogeography models. However, the abstraction of earth system state variables in models means that data products derived from remote sensing need to be post-processed for model-data assimilation. Dynamic global vegetation models (DGVM) rely on the concept of plant functional types (PFT) to group shared traits of thousands of plant species into just several classes. Available databases of observed PFT distributions must be relevant to existing satellite sensors and their derived products, and to the present day distribution of managed lands. Here, we develop four PFT datasets based on land-cover information from three satellite sensors (EOS-MODIS 1 km and 0.5 km, SPOT4-VEGETATION 1 km, and ENVISAT-MERIS 0.3 km spatial resolution) that are merged with spatially-consistent Köppen-Geiger climate zones. Using a beta (β) diversity metric to assess reclassification similarity, we find that the greatest uncertainty in PFT classifications occur most frequently between cropland and grassland categories, and in dryland systems between shrubland, grassland and forest categories because of differences in the minimum threshold required for forest cover. The biogeography-biogeochemistry DGVM, LPJmL, is used in diagnostic mode with the four PFT datasets prescribed to quantify the effect of land-cover uncertainty on climatic sensitivity of gross primary productivity (GPP) and transpiration fluxes. Our results show that land-cover uncertainty has large effects in arid regions, contributing up to 30 % (20 %) uncertainty in the sensitivity of GPP (transpiration) to precipitation. The availability of plant functional type datasets that are consistent with current satellite products and adapted for earth system models is an important component for reducing the uncertainty of terrestrial biogeochemistry to climate variability.

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6

Sarmiento, Jorge L., and Michael Bender. "Carbon biogeochemistry and climate change." Photosynthesis Research 39, no. 3 (March 1994): 209–34. http://dx.doi.org/10.1007/bf00014585.

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7

Isagaliev, Murodjon, Evgeny Abakumov, Avazbek Turdaliev, Muzaffar Obidov, Mavlonjon Khaydarov, Khusnida Abdukhakimova, Tokhirjon Shermatov, and Iskandar Musaev. "Capparis spinosa L. Cenopopulation and Biogeochemistry in South Uzbekistan." Plants 11, no. 13 (June 21, 2022): 1628. http://dx.doi.org/10.3390/plants11131628.

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The article provides an analysis of the cenopopulation and tissues element composition of the medicinal caper plant Capparis spinosa L. distributed on Calcisols formed on eroded alluvial-proluvial gravel textured rocks in the south of the Fergana Valley (Uzbekistan, Central Asia). The predominance of immature plants in the cenopopulation was detected in the Arsif hills massive, and quantitative indicators of micronutrients in the vegetative and generative organs of C. spinosa L. were determined. The study of biomorphological characteristics of the plant during the growing season (April-October) was carried out in the identified 10 observational experimental field populations. The cenopopulation dynamics and plant development patterns of Capparis spinosa L. were characterized for environmental conditions of south Uzbekistan for the first time. Soil, plant element analysis was performed by neutron-activation method. In this case, the samples were irradiated in a nuclear reactor with a neutron flux of 5 × 1013 neutrons/cm2 s, and their quantities were determined in accordance with the half-life of chemical elements. It has also been compared with research materials conducted by world scientists on the importance and pharmacological properties of botanicals in medicine and the food industry, as well as their botanical characteristics. The plant can serve to conserve soil resources, as it prevents water and wind erosion of dense clay soils in the dry subtropical climate of Central Fergana and could be considered an effective agent of destroyed soils remediation. The development of this plant will contribute to the diversification of agriculture in Uzbekistan (Central Asia) and the development of the food industry and pharmacology.

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8

Neubauer, Scott C., Kim Givler, SarahKeith Valentine, and J. Patrick Megonigal. "SEASONAL PATTERNS AND PLANT-MEDIATED CONTROLS OF SUBSURFACE WETLAND BIOGEOCHEMISTRY." Ecology 86, no. 12 (December 2005): 3334–44. http://dx.doi.org/10.1890/04-1951.

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9

Peterken, G. F., G. E. Likens, and F. H. Bormann. "Biogeochemistry of a Forested Ecosystem." Journal of Ecology 84, no. 4 (August 1996): 630. http://dx.doi.org/10.2307/2261486.

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10

Natasha, Muhammad Shahid, Sana Khalid, Camille Dumat, Antoine Pierart, and Nabeel Khan Niazi. "Biogeochemistry of antimony in soil-plant system: Ecotoxicology and human health." Applied Geochemistry 106 (July 2019): 45–59. http://dx.doi.org/10.1016/j.apgeochem.2019.04.006.

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11

Favas, Paulo J. C., João Pratas, Soumita Mitra, Santosh Kumar Sarkar, and Perumal Venkatachalam. "Biogeochemistry of uranium in the soil-plant and water-plant systems in an old uranium mine." Science of The Total Environment 568 (October 2016): 350–68. http://dx.doi.org/10.1016/j.scitotenv.2016.06.024.

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12

Van Oijen, Marcel, Zoltán Barcza, Roberto Confalonieri, Panu Korhonen, György Kröel-Dulay, Eszter Lellei-Kovács, Gaëtan Louarn, et al. "Incorporating Biodiversity into Biogeochemistry Models to Improve Prediction of Ecosystem Services in Temperate Grasslands: Review and Roadmap." Agronomy 10, no. 2 (February 12, 2020): 259. http://dx.doi.org/10.3390/agronomy10020259.

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Multi-species grasslands are reservoirs of biodiversity and provide multiple ecosystem services, including fodder production and carbon sequestration. The provision of these services depends on the control exerted on the biogeochemistry and plant diversity of the system by the interplay of biotic and abiotic factors, e.g., grazing or mowing intensity. Biogeochemical models incorporate a mechanistic view of the functioning of grasslands and provide a sound basis for studying the underlying processes. However, in these models, the simulation of biogeochemical cycles is generally not coupled to simulation of plant species dynamics, which leads to considerable uncertainty about the quality of predictions. Ecological models, on the other hand, do account for biodiversity with approaches adopted from plant demography, but without linking the dynamics of plant species to the biogeochemical processes occurring at the community level, and this hampers the models’ capacity to assess resilience against abiotic stresses such as drought and nutrient limitation. While setting out the state-of-the-art developments of biogeochemical and ecological modelling, we explore and highlight the role of plant diversity in the regulation of the ecosystem processes underlying the ecosystems services provided by multi-species grasslands. An extensive literature and model survey was carried out with an emphasis on technically advanced models reconciling biogeochemistry and biodiversity, which are readily applicable to managed grasslands in temperate latitudes. We propose a roadmap of promising developments in modelling.

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13

Blank, Robert R. "Biogeochemistry of Plant Invasion: A Case Study with Downy Brome (Bromus tectorum)." Invasive Plant Science and Management 1, no. 2 (April 2008): 226–38. http://dx.doi.org/10.1614/ipsm-07-026.1.

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14

Stribling, JM, OA Glahn, XM Chen, and JC Cornwell. "Microtopographic variability in plant distribution and biogeochemistry in a brackish-marsh system." Marine Ecology Progress Series 320 (August 29, 2006): 121–29. http://dx.doi.org/10.3354/meps320121.

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15

Dalling, James W., Katherine Heineman, Grizelle González, and Rebecca Ostertag. "Geographic, environmental and biotic sources of variation in the nutrient relations of tropical montane forests." Journal of Tropical Ecology 32, no. 5 (November 20, 2015): 368–83. http://dx.doi.org/10.1017/s0266467415000619.

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Abstract:Tropical montane forests (TMF) are associated with a widely observed suite of characteristics encompassing forest structure, plant traits and biogeochemistry. With respect to nutrient relations, montane forests are characterized by slow decomposition of organic matter, high investment in below-ground biomass and poor litter quality, relative to tropical lowland forests. However, within TMF there is considerable variation in substrate age, parent material, disturbance and species composition. Here we emphasize that many TMFs are likely to be co-limited by multiple nutrients, and that feedback among soil properties, species traits, microbial communities and environmental conditions drive forest productivity and soil carbon storage. To date, studies of the biogeochemistry of montane forests have been restricted to a few, mostly neotropical, sites and focused mainly on trees while ignoring mycorrhizas, epiphytes and microbial community structure. Incorporating the geographic, environmental and biotic variability in TMF will lead to a greater recognition of plant–soil feedbacks that are critical to understanding constraints on productivity, both under present conditions and under future climate, nitrogen-deposition and land-use scenarios.

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16

Leong, Yoong Kit, Kit Wayne Chew, Wei-Hsin Chen, Jo-Shu Chang, and Pau Loke Show. "Reuniting the Biogeochemistry of Algae for a Low-Carbon Circular Bioeconomy." Trends in Plant Science 26, no. 7 (July 2021): 729–40. http://dx.doi.org/10.1016/j.tplants.2020.12.010.

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17

Tang, Jinyun, and William J. Riley. "On the modeling paradigm of plant root nutrient acquisition." Plant and Soil 459, no. 1-2 (January 14, 2021): 441–51. http://dx.doi.org/10.1007/s11104-020-04798-5.

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AbstractPlant root nutrient acquisition, and to a lesser extent foliar nutrient uptake, maintain plant metabolism and strongly regulate terrestrial biogeochemistry and carbon-climate feedbacks. However, terrestrial biogeochemical models differ in their representations of plant root nutrient acquisition, leading to significantly different, and uncertain, carbon cycle and future climate projections. Here we first review biogeochemical principles and observations relevant to three essential plant root nutrient acquisition mechanisms: activity of nutrient acquiring proteins, maintenance of nutrient stoichiometry, and energy expenditure for these processes. We next examine how these mechanisms are considered in three existing modeling paradigms, and conclude by recommending the capacity-based approach, the need for observations, and necessary modeling developments of plant root nutrient acquisition to improve carbon-climate feedback projections.

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18

Gribsholt, B., and E. Kristensen. "Effects of bioturbation and plant roots on salt marsh biogeochemistry: a mesocosm study." Marine Ecology Progress Series 241 (2002): 71–87. http://dx.doi.org/10.3354/meps241071.

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19

Jiménez, Juan de la Cruz, Elisa Pellegrini, Ole Pedersen, and Mikio Nakazono. "Radial Oxygen Loss from Plant Roots—Methods." Plants 10, no. 11 (October 28, 2021): 2322. http://dx.doi.org/10.3390/plants10112322.

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In flooded soils, an efficient internal aeration system is essential for root growth and plant survival. Roots of many wetland species form barriers to restrict radial O2 loss (ROL) to the rhizosphere. The formation of such barriers greatly enhances longitudinal O2 diffusion from basal parts towards the root tip, and the barrier also impedes the entry of phytotoxic compounds produced in flooded soils into the root. Nevertheless, ROL from roots is an important source of O2 for rhizosphere oxygenation and the oxidation of toxic compounds. In this paper, we review the methodological aspects for the most widely used techniques for the qualitative visualization and quantitative determination of ROL from roots. Detailed methodological approaches, practical set-ups and examples of ROL from roots with or without barriers to ROL are included. This paper provides practical knowledge relevant to several disciplines, including plant–soil interactions, biogeochemistry and eco-physiological aspects of roots and soil biota.

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20

Asner, Gregory P., and Susan W. Beatty. "Effects of an African grass invasion on Hawaiian shrubland nitrogen biogeochemistry." Plant and Soil 186, no. 2 (October 1996): 205–11. http://dx.doi.org/10.1007/bf02415515.

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21

Putman, R. J., R. L. Jones, and H. C. Hanson. "Mineral Licks, Geophagy, and Biogeochemistry of North American Ungulates." Journal of Ecology 74, no. 1 (March 1986): 306. http://dx.doi.org/10.2307/2260373.

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22

Gribsholt, B., JE Kostka, and E. Kristensen. "Impact of fiddler crabs and plant roots on sediment biogeochemistry in a Georgia saltmarsh." Marine Ecology Progress Series 259 (2003): 237–51. http://dx.doi.org/10.3354/meps259237.

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23

Herbert, Darrell A. "Effects of Plant Growth Characteristics on Biogeochemistry and Community Composition in a Changing Climate." Ecosystems 2, no. 4 (July 1, 1999): 367–82. http://dx.doi.org/10.1007/s100219900086.

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24

Zhang, Zhong-Sheng, Xian-Guo Lu, Qi-Chao Wang, and Dong-Mei Zheng. "Mercury, Cadmium and Lead Biogeochemistry in the Soil–Plant–Insect System in Huludao City." Bulletin of Environmental Contamination and Toxicology 83, no. 2 (March 12, 2009): 255–59. http://dx.doi.org/10.1007/s00128-009-9688-6.

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25

Zhu, Q., Q. Zhuang, D. Henze, K. Bowman, M. Chen, Y. Liu, Y. He, et al. "Constraining terrestrial ecosystem CO<sub>2</sub> fluxes by integrating models of biogeochemistry and atmospheric transport and data of surface carbon fluxes and atmospheric CO<sub>2</sub> concentrations." Atmospheric Chemistry and Physics Discussions 14, no. 16 (September 3, 2014): 22587–638. http://dx.doi.org/10.5194/acpd-14-22587-2014.

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Abstract. Regional net carbon fluxes of terrestrial ecosystems could be estimated with either biogeochemistry models by assimilating surface carbon flux measurements or atmospheric CO2 inversions by assimilating observations of atmospheric CO2 concentrations. Here we combine the ecosystem biogeochemistry modeling and atmospheric CO2 inverse modeling to investigate the magnitude and spatial distribution of the terrestrial ecosystem CO2 sources and sinks. First, we constrain a terrestrial ecosystem model (TEM) at site level by assimilating the observed net ecosystem production (NEP) for various plant functional types. We find that the uncertainties of model parameters are reduced up to 90% and model predictability is greatly improved for all the plant functional types (coefficients of determination are enhanced up to 0.73). We then extrapolate the model to a global scale at a 0.5° × 0.5° resolution to estimate the large-scale terrestrial ecosystem CO2 fluxes, which serve as prior for atmospheric CO2 inversion. Second, we constrain the large-scale terrestrial CO2 fluxes by assimilating the GLOBALVIEW-CO2 and mid-tropospheric CO2 retrievals from the Atmospheric Infrared Sounder (AIRS) into an atmospheric transport model (GEOS-Chem). The transport inversion estimates that: (1) the annual terrestrial ecosystem carbon sink in 2003 is −2.47 Pg C yr−1, which agrees reasonably well with the most recent inter-comparison studies of CO2 inversions (−2.82 Pg C yr−1); (2) North America temperate, Europe and Eurasia temperate regions act as major terrestrial carbon sinks; and (3) The posterior transport model is able to reasonably reproduce the atmospheric CO2 concentrations, which are validated against Comprehensive Observation Network for TRace gases by AIrLiner (CONTRAIL) CO2 concentration data. This study indicates that biogeochemistry modeling or atmospheric transport and inverse modeling alone might not be able to well quantify regional terrestrial carbon fluxes. However, combining the two modeling approaches and assimilating data of surface carbon flux as well as atmospheric CO2 mixing ratios might significantly improve the quantification of terrestrial carbon fluxes.

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26

Puschenreiter, Markus, Andrea Schnepf, Inés Molina Millán, Walter J. Fitz, Othmar Horak, Jürgen Klepp, Thomas Schrefl, Enzo Lombi, and Walter W. Wenzel. "Changes of Ni biogeochemistry in the rhizosphere of the hyperaccumulator Thlaspi goesingense." Plant and Soil 271, no. 1-2 (April 2005): 205–18. http://dx.doi.org/10.1007/s11104-004-2387-5.

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27

Chagnon, Pierre‐Luc, Francois Rineau, and Christina Kaiser. "Mycorrhizas across scales: a journey between genomics, global patterns of biodiversity and biogeochemistry." New Phytologist 209, no. 3 (January 12, 2016): 913–16. http://dx.doi.org/10.1111/nph.13819.

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28

Vinther, HF, P. Norling, PS Kristensen, P. Dolmer, and M. Holmer. "Effects of coexistence between the blue mussel and eelgrass on sediment biogeochemistry and plant performance." Marine Ecology Progress Series 447 (February 13, 2012): 139–49. http://dx.doi.org/10.3354/meps09505.

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29

Arhin, Emmanuel, Samuel Torkornoo, Musah Saeed Zango, and Raymond Webrah Kazapoe. "Gold in Plant: A Biogeochemical Approach in Detecting Gold Anomalies Undercover- A Case Study at Pelangio Gold Project at Mamfo Area of Brong Ahafo, Ghana." Ghana Mining Journal 18, no. 1 (June 28, 2018): 39–48. http://dx.doi.org/10.4314/gm.v18i1.5.

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Many plants have the ability to take up gold from soils and accumulate them in their tissues. Their concentrations and distributions reflect the nearby gold deposits masked by complex regolith. The 50 vegetation samples collected at Pelangio Tepa concession recorded low and subtle gold (Au) concentrations of 0.2 to 10.4 ppb at Pokukrom target, 0.3 to 28.3 ppb at Nfante East target and 0.1 to 1.7 ppb at Subriso target. Each target area had different concentration populations enough to distinguish the anomalous areas from the background contrary to Au-geochemical expressions derived from the gold in soils. So many uncertainties were placed on the soil-Au-geochemistry because the defined anomalies were not strong and generally appear patchy, weak and subtle that led to the assumption of no associated bedrock mineralisation. The gold in plant samples confirmed the Pokukrom anomaly that has been drilled and known to relate to underlying mineralisation. Much better and robust anomaly was defined by the biogeochemical Au data in plants sampled and analysed for Au at Nfante East target and isolated high patchy anomalies were identified at Subriso area. The case study at Pelangio Mamfo project reveals and recommends the significant application of biogeochemistry in mineral exploration particularly in the field of gold prospecting at the regional exploration stage and endorses it as being practically feasible in regolith-dominated terrains where regolith-landform modifications may impact on the true geochemistry in anomaly delineation. Keywords: Biogeochemistry, Regolith-Dominated-Terrain, Plant, Gold, Pelangio

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30

Rout, Marnie E., and Thomas H. Chrzanowski. "The invasive Sorghum halepense harbors endophytic N2-fixing bacteria and alters soil biogeochemistry." Plant and Soil 315, no. 1-2 (August 5, 2008): 163–72. http://dx.doi.org/10.1007/s11104-008-9740-z.

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31

Neina, Dora. "The Role of Soil pH in Plant Nutrition and Soil Remediation." Applied and Environmental Soil Science 2019 (November 3, 2019): 1–9. http://dx.doi.org/10.1155/2019/5794869.

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In the natural environment, soil pH has an enormous influence on soil biogeochemical processes. Soil pH is, therefore, described as the “master soil variable” that influences myriads of soil biological, chemical, and physical properties and processes that affect plant growth and biomass yield. This paper discusses how soil pH affects processes that are interlinked with the biological, geological, and chemical aspects of the soil environment as well as how these processes, through anthropogenic interventions, induce changes in soil pH. Unlike traditional discussions on the various causes of soil pH, particularly soil acidification, this paper focuses on relationships and effects as far as soil biogeochemistry is concerned. Firstly, the effects of soil pH on substance availability, mobility, and soil biological processes are discussed followed by the biogenic regulation of soil pH. It is concluded that soil pH can broadly be applied in two broad areas, i.e., nutrient cycling and plant nutrition and soil remediation (bioremediation and physicochemical remediation).

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32

Hasanuzzaman, Mirza, M. H. M. Borhannuddin Bhuyan, Ali Raza, Barbara Hawrylak-Nowak, Renata Matraszek-Gawron, Kamrun Nahar, and Masayuki Fujita. "Selenium Toxicity in Plants and Environment: Biogeochemistry and Remediation Possibilities." Plants 9, no. 12 (December 4, 2020): 1711. http://dx.doi.org/10.3390/plants9121711.

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Selenium (Se) is a widely distributed trace element with dual (beneficial or toxic) effects for humans, animals, and plants. The availability of Se in the soil is reliant on the structure of the parental material and the procedures succeeding to soil formation. Anthropogenic activities affect the content of Se in the environment. Although plants are the core source of Se in animal and human diet, the role of Se in plants is still debatable. A low concentration of Se can be beneficial for plant growth, development, and ecophysiology both under optimum and unfavorable environmental conditions. However, excess Se results in toxic effects, especially in Se sensitive plants, due to changing structure and function of proteins and induce oxidative/nitrosative stress, which disrupts several metabolic processes. Contrary, Se hyperaccumulators absorb and tolerate exceedingly large amounts of Se, could be potentially used to remediate, i.e., remove, transfer, stabilize, and/or detoxify Se-contaminants in the soil and groundwater. Thereby, Se-hyperaccumulators can play a dynamic role in overcoming global problem Se-inadequacy and toxicity. However, the knowledge of Se uptake and metabolism is essential for the effective phytoremediation to remove this element. Moreover, selecting the most efficient species accumulating Se is crucial for successful phytoremediation of a particular Se-contaminated area. This review emphasizes Se toxicity in plants and the environment with regards to Se biogeochemistry and phytoremediation aspects. This review follows a critical approach and stimulates thought for future research avenues.

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33

Tang, Jinyun, William J. Riley, and Qing Zhu. "Supporting hierarchical soil biogeochemical modeling: version 2 of the Biogeochemical Transport and Reaction model (BeTR-v2)." Geoscientific Model Development 15, no. 4 (February 24, 2022): 1619–32. http://dx.doi.org/10.5194/gmd-15-1619-2022.

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Abstract. Reliable soil biogeochemical modeling is a prerequisite for credible projections of climate change and associated ecosystem feedbacks. This recognition has called for frameworks that can support flexible and efficient development and application of new or alternative soil biogeochemical modules in Earth system models (ESMs). The the Biogeochemical Transport and Reaction model version 1 (BeTR-v1) code (i.e., CLM4-BeTR) is one such framework designed to accelerate the development and integration of new soil biogeochemistry formulations into ESMs and to analyze structural uncertainty in ESM simulations. With a generic reactive transport capability, BeTR-v1 can represent multiphase (e.g., gaseous, aqueous, and solid), multi-tracer (e.g., nitrate and organic carbon), and multi-organism (e.g., plants, bacteria, and fungi) dynamics. Here, we describe the new version, Biogeochemical Transport and Reaction model version 2 (BeTR-v2), which adopts more robust numerical solvers for multiphase diffusion and advection and coupling between biogeochemical reactions and improves code modularization over BeTR-v1. BeTR-v2 better supports different mathematical formulations in a hierarchical manner by allowing the resultant model be run for a single topsoil layer or a vertically resolved soil column, and it allows the model to be fully coupled with the land component of the Energy Exascale Earth System Model (E3SM). We demonstrate the capability of BeTR-v2 with benchmark cases and example soil biogeochemical (BGC) implementations. By taking advantage of BeTR-v2's generic structure integrated in E3SM, we then found that calibration could not resolve biases introduced by different numerical coupling strategies of plant–soil biogeochemistry. These results highlight the importance of numerically robust implementation of soil biogeochemistry and coupling with hydrology, thermal dynamics, and plants – capabilities that the open-source BeTR-v2 provides. We contend that Earth system models should strive to minimize this uncertainty by applying better numerical solvers.

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Marler, Thomas E. "Leaf Elemental Concentrations, Stoichiometry, and Resorption in Guam’s Coastal Karst Forests." Diversity 13, no. 11 (October 29, 2021): 545. http://dx.doi.org/10.3390/d13110545.

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Greater knowledge concerning the interspecific diversity of the plant leaf ionome is required to effectively understand the spatiotemporal dynamics of biogeochemistry, but Micronesia has been ignored in this literature. The objectives of this study were to quantify the leaf ionome, resorption efficiency, and stoichiometry of leaves from 25 plant species representing Guam’s coastal karst forests. Carbon and nitrogen were quantified by dry combustion, and other minerals and metals were quantified by spectrometry. Nitrogen and calcium concentrations in Guam’s green leaves exceeded the published global means, but manganese and copper concentrations were less than the global means. The remainder of the elements were within the expected ranges. Nutrient resorption rates exhibited a decreasing order of potassium > phosphorus > nitrogen > zinc > copper. The term “accretion efficiency” is introduced to describe the accumulation of an element throughout leaf aging and senescence, and calcium and iron exhibited substantial accretion efficiency in this study. Stoichiometry relations indicated that Guam’s karst forest is most limited by phosphorus and then secondarily limited by nitrogen, although several individual taxa exhibited co-limitation by potassium. Five of the species are officially listed on extinction threat lists. Of these, the Malvaceae tree Heriteria longipetiolata exhibited leaf traits depicting the most recalcitrant litter characteristics, and the Fabaceae tree Serianthes nelsonii exhibited leaf traits depicting the most labile litter characteristics. The contributions of these two tree species to spatiotemporal diversity in biogeochemistry appear to be profound, indicating species recovery efforts are of paramount importance for maintaining ecosystem function and soil heterotroph biodiversity in northern Guam.

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35

Qu, Yang, Shamil Maksyutov, and Qianlai Zhuang. "Technical Note: An efficient method for accelerating the spin-up process for process-based biogeochemistry models." Biogeosciences 15, no. 13 (July 3, 2018): 3967–73. http://dx.doi.org/10.5194/bg-15-3967-2018.

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Abstract. To better understand the role of terrestrial ecosystems in the global carbon cycle and their feedbacks to the global climate system, process-based biogeochemistry models need to be improved with respect to model parameterization and model structure. To achieve these improvements, the spin-up time for those differential equation-based models needs to be shortened. Here, an algorithm for a fast spin-up was developed by finding the exact solution of a linearized system representing the cyclo-stationary state of a model and implemented in a biogeochemistry model, the Terrestrial Ecosystem Model (TEM). With the new spin-up algorithm, we showed that the model reached a steady state in less than 10 years of computing time, while the original method requires more than 200 years on average of model run. For the test sites with five different plant functional types, the new method saves over 90 % of the original spin-up time in site-level simulations. In North American simulations, average spin-up time savings for all grid cells is 85 % for either the daily or monthly version of TEM. The developed spin-up method shall be used for future quantification of carbon dynamics at fine spatial and temporal scales.

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36

Grbovic, Filip, Gordana Gajic, Snezana Brankovic, Zoran Simic, Nenad Vukovic, Pavle Pavlovic, and Marina Topuzovic. "Complex effect of Robinia pseudoacacia L. and Ailanthus altissima (Mill.) Swingle growing on asbestos deposits: Allelopathy and biogeochemistry." Journal of the Serbian Chemical Society 85, no. 1 (2020): 141–53. http://dx.doi.org/10.2298/jsc190416062g.

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Asbestos is widely mined and used around the globe posing a great risk to environment and human health. The main objective of this study was to determine allelopathic potential of Robinia pseudoacacia L. and Ailanthus altissima (Mill.) Swingle growing on the asbestos deposits at abandoned mine ?Stragari? in central Serbia. The pH, content of carbon, nitrogen, calcium carbonate, available phosphorous and potassium, content of Fe, Ni, Cu, Zn, Pb, Mn, and phenolics were analyzed in the control asbestos (zones without vegetation cover) and plant rhizospheric asbestos. Allelopathic activity of plant species was assessed by ?rhizosphere soil method?, and Trifolium pratense L. and Medicago sativa L. were used as the indicator species. A. altissima showed higher allelopathic potential compared to R. pseudoacacia for T. pratense and M. sativa due to greater content of phenolics. Alleopathic activity of phenolics in rhizospheric asbestos was highly correlated with pH, content of carbon and nitrogen, available phosphate and potassium, and content of Ni, Cu, Zn, Pb and Mn. A. altissima increased phenolics content in rhizospheric asbestos inhibiting the plant growth. This woody plant in spite of high allelopathic potential is suitable for revegetation of distrurbed ecosystems because it initiates pedogenesis and affects the asbestos chemistry.

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37

Noyce, Genevieve L., and J. Patrick Megonigal. "Biogeochemical and plant trait mechanisms drive enhanced methane emissions in response to whole-ecosystem warming." Biogeosciences 18, no. 8 (April 19, 2021): 2449–63. http://dx.doi.org/10.5194/bg-18-2449-2021.

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Abstract. Climate warming perturbs ecosystem carbon (C) cycling, causing both positive and negative feedbacks on greenhouse gas emissions. In 2016, we began a tidal marsh field experiment in two vegetation communities to investigate the mechanisms by which whole-ecosystem warming alters C gain, via plant-driven sequestration in soils, and C loss, primarily via methane (CH4) emissions. Here, we report the results from the first 4 years. As expected, warming of 5.1 ∘C more than doubled CH4 emissions in both plant communities. We propose this was caused by a combination of four mechanisms: (i) a decrease in the proportion of CH4 consumed by CH4 oxidation, (ii) more C substrates available for methanogenesis, (iii) reduced competition between methanogens and sulfate-reducing bacteria, and (iv) indirect effects of plant traits. Plots dominated by Spartina patens consistently emitted more CH4 than plots dominated by Schoenoplectus americanus, indicating key differences in the roles these common wetland plants play in affecting anaerobic soil biogeochemistry and suggesting that plant composition can modulate coastal wetland responses to climate change.

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38

Mezbahuddin, Mohammad, Robert F. Grant, and Lawrence B. Flanagan. "Coupled eco-hydrology and biogeochemistry algorithms enable the simulation of water table depth effects on boreal peatland net CO<sub>2</sub> exchange." Biogeosciences 14, no. 23 (December 7, 2017): 5507–31. http://dx.doi.org/10.5194/bg-14-5507-2017.

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Abstract. Water table depth (WTD) effects on net ecosystem CO2 exchange of boreal peatlands are largely mediated by hydrological effects on peat biogeochemistry and the ecophysiology of peatland vegetation. The lack of representation of these effects in carbon models currently limits our predictive capacity for changes in boreal peatland carbon deposits under potential future drier and warmer climates. We examined whether a process-level coupling of a prognostic WTD with (1) oxygen transport, which controls energy yields from microbial and root oxidation–reduction reactions, and (2) vascular and nonvascular plant water relations could explain mechanisms that control variations in net CO2 exchange of a boreal fen under contrasting WTD conditions, i.e., shallow vs. deep WTD. Such coupling of eco-hydrology and biogeochemistry algorithms in a process-based ecosystem model, ecosys, was tested against net ecosystem CO2 exchange measurements in a western Canadian boreal fen peatland over a period of drier-weather-driven gradual WTD drawdown. A May–October WTD drawdown of ∼ 0.25 m from 2004 to 2009 hastened oxygen transport to microbial and root surfaces, enabling greater microbial and root energy yields and peat and litter decomposition, which raised modeled ecosystem respiration (Re) by 0.26 µmol CO2 m−2 s−1 per 0.1 m of WTD drawdown. It also augmented nutrient mineralization, and hence root nutrient availability and uptake, which resulted in improved leaf nutrient (nitrogen) status that facilitated carboxylation and raised modeled vascular gross primary productivity (GPP) and plant growth. The increase in modeled vascular GPP exceeded declines in modeled nonvascular (moss) GPP due to greater shading from increased vascular plant growth and moss drying from near-surface peat desiccation, thereby causing a net increase in modeled growing season GPP by 0.39 µmol CO2 m−2 s−1 per 0.1 m of WTD drawdown. Similar increases in GPP and Re caused no significant WTD effects on modeled seasonal and interannual variations in net ecosystem productivity (NEP). These modeled trends were corroborated well by eddy covariance measured hourly net CO2 fluxes (modeled vs. measured: R2 ∼ 0.8, slopes ∼ 1 ± 0.1, intercepts ∼ 0.05 µmol m−2 s−1), hourly measured automated chamber net CO2 fluxes (modeled vs. measured: R2 ∼ 0.7, slopes ∼ 1 ± 0.1, intercepts ∼ 0.4 µmol m−2 s−1), and other biometric and laboratory measurements. Modeled drainage as an analog for WTD drawdown induced by climate-change-driven drying showed that this boreal peatland would switch from a large carbon sink (NEP ∼ 160 g C m−2 yr−1) to carbon neutrality (NEP ∼ 10 g C m−2 yr−1) should the water table deepen by a further ∼ 0.5 m. This decline in projected NEP indicated that a further WTD drawdown at this fen would eventually lead to a decline in GPP due to water limitation. Therefore, representing the effects of interactions among hydrology, biogeochemistry and plant physiological ecology on ecosystem carbon, water, and nutrient cycling in global carbon models would improve our predictive capacity for changes in boreal peatland carbon sequestration under changing climates.

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39

Qin, Haoyang, and Zhenghai Wang. "Biogeochemistry of Dominant Plants and Soils in Shewushan Gold Lateritic Deposit, China." Plants 11, no. 1 (December 23, 2021): 38. http://dx.doi.org/10.3390/plants11010038.

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This paper describes the effect of mineral elements on dominant plants in the Shewushan lateritic gold deposit, China. For this purpose, 30 soil profile samples at different depths and 3 kinds of dominant plants including Populus canadensis (Populus X canadensis Moench), Cinnamomun camphora (Cinnamomum camphora (L.) Presl.) and Rhus chinensis (Rhus chinensis Mill.) were collected. The concentration of ore-forming elements including Au, Ag, Pb, Zn, Cu, As, Fe, and S were analyzed. Based on the investigation of two mine profiles, it can be found that Au, Pb, As, and Fe were mainly enriched in laterite layer and the brown clay layer at a depth of 5–11 m. Moreover, the biological accumulate coefficient (BAC) and the contrast coefficient (CM) were calculated to assess the sensitivity and concentrating ability of Populus canadensis and Cinnamomun camphora. To investigate the response of the two species to metal stress, the contents of chlorophyll, malondialdehyde (MDA), and activities of superoxide dismutase (SOD) and peroxidase (POD) were determined. The result showed that Populus canadensis and Cinnamomun camphora have a high tolerance to metal stress and that both of the two species can indicate the content of Au, As, Pb, and Co in topsoil.

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40

Roland, F., VLM Huszar, VF Farjalla, A. Enrich-Prast, AM Amado, and JPHB Ometto. "Climate change in Brazil: perspective on the biogeochemistry of inland waters." Brazilian Journal of Biology 72, no. 3 suppl (August 2012): 709–22. http://dx.doi.org/10.1590/s1519-69842012000400009.

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Although only a small amount of the Earth's water exists as continental surface water bodies, this compartment plays an important role in the biogeochemical cycles connecting the land to the atmosphere. The territory of Brazil encompasses a dense river net and enormous number of shallow lakes. Human actions have been heavily influenced by the inland waters across the country. Both biodiversity and processes in the water are strongly driven by seasonal fluvial forces and/or precipitation. These macro drivers are sensitive to climate changes. In addition to their crucial importance to humans, inland waters are extremely rich ecosystems, harboring high biodiversity, promoting landscape equilibrium (connecting ecosystems, maintaining animal and plant flows in the landscape, and transferring mass, nutrients and inocula), and controlling regional climates through hydrological-cycle feedback. In this contribution, we describe the aquatic ecological responses to climate change in a conceptual perspective, and we then analyze the possible climate-change scenarios in different regions in Brazil. We also indentify some potential biogeochemical signals in running waters, natural lakes and man-made impoundments. The possible future changes in climate and aquatic ecosystems in Brazil are highly uncertain. Inland waters are pressured by local environmental changes because of land uses, landscape fragmentation, damming and diversion of water bodies, urbanization, wastewater load, and level of pollutants can alter biogeochemical patterns in inland waters over a shorter term than can climate changes. In fact, many intense environmental changes may enhance the effects of changes in climate. Therefore, the maintenance of key elements within the landscape and avoiding extreme perturbation in the systems are urgent to maintain the sustainability of Brazilian inland waters, in order to prevent more catastrophic future events.

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Fraser, M. W., J. Statton, R. K. Hovey, B. Laverock, and G. A. Kendrick. "Seagrass derived organic matter influences biogeochemistry, microbial communities, and seedling biomass partitioning in seagrass sediments." Plant and Soil 400, no. 1-2 (October 31, 2015): 133–46. http://dx.doi.org/10.1007/s11104-015-2721-0.

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42

White, Richard Allen, Joshua Rosnow, Paul D. Piehowski, Colin J. Brislawn, and James J. Moran. "In Situ Non-Destructive Temporal Measurements of the Rhizosphere Microbiome ‘Hot-Spots’ Using Metaproteomics." Agronomy 11, no. 11 (November 6, 2021): 2248. http://dx.doi.org/10.3390/agronomy11112248.

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Rhizosphere arguably embodies the most diverse microbial ecosystem on the planet, yet it is largely a functional ‘black box’ of belowground plant-microbiome interactions. The rhizosphere is the primary site of entry for subsurface injection of fixed carbon (C) into soil with impacts on local to global scale C biogeochemistry and ultimately Earth’s climate. While spatial organization of rhizosphere is central to its function, small scale and steep microbial and geochemical gradients within this dynamic region make it easily disrupted by sampling. The significant challenge presented by sampling blocks elucidation of discreet functions, drivers, and interactions within rhizosphere ecosystems. Here, we describe a non-destructive sampling method linked to metaproteomic analysis in order to measure temporal shifts in the microbial composition and function of rhizosphere. A robust, non-destructive method of sampling microbial hotspots within rhizosphere provides an unperturbed window into the elusive functional interactome of this system over time and space.

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43

Castillo, Pamela, Ignacio Serra, Brian Townley, Felipe Aburto, Sofía López, Joseline Tapia, and Muriel Contreras. "Biogeochemistry of plant essential mineral nutrients across rock, soil, water and fruits in vineyards of Central Chile." CATENA 196 (January 2021): 104905. http://dx.doi.org/10.1016/j.catena.2020.104905.

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44

Miao, Li, Ruisong Xu, Yueliang Ma, Zhaoyu Zhu, Jie Wang, Rui Cai, and Yu Chen. "Geochemistry and biogeochemistry of rare earth elements in a surface environment (soil and plant) in South China." Environmental Geology 56, no. 2 (December 21, 2007): 225–35. http://dx.doi.org/10.1007/s00254-007-1157-0.

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45

Cunha, Maria do Carmo Lima e., Lauro V. S. Nardi, and Ingke F. Muller. "Biogeochemistry of REE elements and tetrad effect in the soil-plant system: a study on volcanic rock covers in southernmost Brazil." Anais da Academia Brasileira de Ciências 84, no. 4 (November 9, 2012): 911–18. http://dx.doi.org/10.1590/s0001-37652012005000069.

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This paper deals with the distribution of REE in rock, soil and plant in an area of monzonitic rocks from southernmost Brazil. The REE patterns in Schinus lensticifolius show a negative-Ce anomaly and a prominent tetrad effect, characterized as W-type that are not present in rock and soil samples. The REE patterns in the soils and rocks sampled are very similar and there is no fractionation of REE during the processes of soil formation. The W-type patterns are interpreted as indicating that REE were absorved by S. lentiscifolius as simple ions rather than as complex ions, or, alternatively, that the transport of REE in the plant metabolic processes was as free ions. The recognition of tetrads, either, M- or W-type patterns, is an additional tool for understanding the biogeochemistry of REE and can contribute to the study of monitoring processes of contaminated environment or to mineral prospecting.

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46

Mitchell, Myron J. "Book review: E. Matzner: Biogeochemistry of Forested Catchments in A Changing Environment, A German Case Study." Journal of Plant Nutrition and Soil Science 168, no. 1 (February 2005): 145–46. http://dx.doi.org/10.1002/jpln.200590000.

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47

Damman, Antoni W. H. "Hydrology, development, and biogeochemistry of ombrogenous peat bogs with special reference to nutrient relocation in a western Newfoundland bog." Canadian Journal of Botany 64, no. 2 (February 1, 1986): 384–94. http://dx.doi.org/10.1139/b86-055.

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Ombrogenous bogs differ fundamentally from other peatlands in their hydrology, and this affects peat accumulation and bog development as well as the elemental concentrations in peat and water. In oceanic and northern parts of the raised bog zone, the surface of the bog center remains below the critical profile of the water mound because factors other than moisture supply limit its maximum height. In the surface peat, Na and K decrease with depth, whereas other elements increase to a greater or smaller extent. Most elements occur in surprisingly low concentrations below the anaerobic level. In an ombrotrophic bog in western Newfoundland, Na, Mg, and Ca concentrations of bog water were 5, 4–5, and 0.5 times higher, respectively, than in precipitation. K and Mg increased downslope, especially in spring, but not during the vegetation season. In July and August, 20–30% of the Mg, 75–80% of the K, and 93% of the Ca are removed from the precipitation while the water seeps over the bog. Uptake by vegetation is primarily responsible, but Ca is mostly adsorbed on the peat. Increased water flow, rather than higher nutrient concentration, appears to account for the occurrence of more nutrient-demanding species, such as Nymphaea odorata and Utricularia vulgaris, in the pools of the lower slope.

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48

RICHARDSON, CURTIS J. "The Biogeochemistry of Submerged Soils. Kirk, G. 2004. Chichester, UK: John Wiley & Sons, Ltd. £100 (hardcover). 304 pp." Annals of Botany 96, no. 1 (July 1, 2005): 165. http://dx.doi.org/10.1093/aob/mci162.

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49

Lerdau, Manuel T. "Minding (and bridging) the gap between evolutionary ecology and atmospheric biogeochemistry in a study of plant pollinator behaviour." New Phytologist 209, no. 1 (November 26, 2015): 11–12. http://dx.doi.org/10.1111/nph.13752.

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50

Luo, Xiaosan, Haijian Bing, Zhuanxi Luo, Yujun Wang, and Ling Jin. "Impacts of atmospheric particulate matter pollution on environmental biogeochemistry of trace metals in soil-plant system: A review." Environmental Pollution 255 (December 2019): 113138. http://dx.doi.org/10.1016/j.envpol.2019.113138.

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