Статті в журналах з теми "Oxford Nanopore sequencing"
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Heikema, Astrid P., Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia D. Hiltemann, Willem de Koning, Robert Kraaij, et al. "Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota." Genes 11, no. 9 (September 21, 2020): 1105. http://dx.doi.org/10.3390/genes11091105.
Повний текст джерелаLin, Bo, Jianan Hui, and Hongju Mao. "Nanopore Technology and Its Applications in Gene Sequencing." Biosensors 11, no. 7 (June 30, 2021): 214. http://dx.doi.org/10.3390/bios11070214.
Повний текст джерелаLu, Hengyun, Francesca Giordano, and Zemin Ning. "Oxford Nanopore MinION Sequencing and Genome Assembly." Genomics, Proteomics & Bioinformatics 14, no. 5 (October 2016): 265–79. http://dx.doi.org/10.1016/j.gpb.2016.05.004.
Повний текст джерелаEisenstein, Michael. "Oxford Nanopore announcement sets sequencing sector abuzz." Nature Biotechnology 30, no. 4 (April 2012): 295–96. http://dx.doi.org/10.1038/nbt0412-295.
Повний текст джерелаSereika, Mantas, Rasmus Hansen Kirkegaard, Søren Michael Karst, Thomas Yssing Michaelsen, Emil Aarre Sørensen, Rasmus Dam Wollenberg, and Mads Albertsen. "Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing." Nature Methods 19, no. 7 (July 2022): 823–26. http://dx.doi.org/10.1038/s41592-022-01539-7.
Повний текст джерелаMacKenzie, Morgan, and Christos Argyropoulos. "An Introduction to Nanopore Sequencing: Past, Present, and Future Considerations." Micromachines 14, no. 2 (February 16, 2023): 459. http://dx.doi.org/10.3390/mi14020459.
Повний текст джерелаСалахов, Р. Р., М. В. Голубенко, Е. Н. Павлюкова, А. В. Марков, Н. П. Бабушкина, А. Ф. Канев, Н. Р. Валиахметов, and М. С. Назаренко. "Application of monomolecular sequencing technology to the diagnostics of hypertrophic cardiomyopathy." Nauchno-prakticheskii zhurnal «Medicinskaia genetika», no. 5(214) (May 29, 2020): 9–10. http://dx.doi.org/10.25557/2073-7998.2020.05.9-10.
Повний текст джерелаBurns, Adam, David Robert Bruce, Pauline Robbe, Adele Timbs, Basile Stamatopoulos, Ruth Clifford, Maria Lopopolo, Duncan Parkes, Kate E. Ridout, and Anna Schuh. "Detection of Clinically Relevant Molecular Alterations in Chronic Lymphocytic Leukemia (CLL) By Nanopore Sequencing." Blood 132, Supplement 1 (November 29, 2018): 1847. http://dx.doi.org/10.1182/blood-2018-99-110948.
Повний текст джерелаDumschott, Kathryn, Maximilian H.-W. Schmidt, Harmeet Singh Chawla, Rod Snowdon, and Björn Usadel. "Oxford Nanopore sequencing: new opportunities for plant genomics?" Journal of Experimental Botany 71, no. 18 (May 27, 2020): 5313–22. http://dx.doi.org/10.1093/jxb/eraa263.
Повний текст джерелаLeger, Adrien, and Tommaso Leonardi. "pycoQC, interactive quality control for Oxford Nanopore Sequencing." Journal of Open Source Software 4, no. 34 (February 28, 2019): 1236. http://dx.doi.org/10.21105/joss.01236.
Повний текст джерелаChen, Weigang, Peng Zhang, Lifu Song, Jinsheng Yang, and Changcai Han. "Simulation of Nanopore Sequencing Signals Based on BiGRU." Sensors 20, no. 24 (December 17, 2020): 7244. http://dx.doi.org/10.3390/s20247244.
Повний текст джерелаCzmil, Anna, Michal Wronski, Sylwester Czmil, Marta Sochacka-Pietal, Michal Cmil, Jan Gawor, Tomasz Wołkowicz, Dariusz Plewczynski, Dominik Strzalka, and Michal Pietal. "NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology." PeerJ 10 (March 29, 2022): e13056. http://dx.doi.org/10.7717/peerj.13056.
Повний текст джерелаLamb, Harrison J., Ben J. Hayes, Loan T. Nguyen, and Elizabeth M. Ross. "The Future of Livestock Management: A Review of Real-Time Portable Sequencing Applied to Livestock." Genes 11, no. 12 (December 9, 2020): 1478. http://dx.doi.org/10.3390/genes11121478.
Повний текст джерелаLoman, Nick, Sarah Goodwin, Hans J. Jansen, and Matt Loose. "A disruptive sequencer meets disruptive publishing." F1000Research 4 (October 15, 2015): 1074. http://dx.doi.org/10.12688/f1000research.7229.1.
Повний текст джерелаZhao, Kaishun, Chunlin Tu, Wei Chen, Haiying Liang, Wenjing Zhang, Yilei Wang, Ye Jin, et al. "Rapid Identification of Drug-Resistant Tuberculosis Genes Using Direct PCR Amplification and Oxford Nanopore Technology Sequencing." Canadian Journal of Infectious Diseases and Medical Microbiology 2022 (March 28, 2022): 1–8. http://dx.doi.org/10.1155/2022/7588033.
Повний текст джерелаTytgat, Olivier, Yannick Gansemans, Jana Weymaere, Kaat Rubben, Dieter Deforce, and Filip Van Nieuwerburgh. "Nanopore Sequencing of a Forensic STR Multiplex Reveals Loci Suitable for Single-Contributor STR Profiling." Genes 11, no. 4 (April 1, 2020): 381. http://dx.doi.org/10.3390/genes11040381.
Повний текст джерелаKinimi, Edson, Mana Mahapatra, Tebogo Kgotlele, Mariam R. Makange, Chandana Tennakoon, Felix Njeumi, Steven Odongo, et al. "Complete Genome Sequencing of Field Isolates of Peste des Petits Ruminants Virus from Tanzania Revealed a High Nucleotide Identity with Lineage III PPR Viruses." Animals 11, no. 10 (October 15, 2021): 2976. http://dx.doi.org/10.3390/ani11102976.
Повний текст джерелаChen, Zhao, David L. Erickson, and Jianghong Meng. "Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing." International Journal of Molecular Sciences 21, no. 23 (December 1, 2020): 9161. http://dx.doi.org/10.3390/ijms21239161.
Повний текст джерелаLiem, Michael, Hans J. Jansen, Ron P. Dirks, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J. L. F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt, and Herman P. Spaink. "De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing." F1000Research 6 (August 3, 2018): 618. http://dx.doi.org/10.12688/f1000research.11146.2.
Повний текст джерелаChalapati, Sachin, Conor A. Crosbie, Dixita Limbachiya, and Nimesh Pinnamaneni. "Direct oligonucleotide sequencing with nanopores." Open Research Europe 1 (August 24, 2021): 47. http://dx.doi.org/10.12688/openreseurope.13578.2.
Повний текст джерелаChalapati, Sachin, Conor A. Crosbie, Dixita Limbachiya, and Nimesh Pinnamaneni. "Direct oligonucleotide sequencing with nanopores." Open Research Europe 1 (May 12, 2021): 47. http://dx.doi.org/10.12688/openreseurope.13578.1.
Повний текст джерелаDiubo, Yulia V., Artur E. Akhremchuk, Leonid N. Valentovich, and Yevgeny A. Nikolaichik. "Restriction-modification systems and DNA methylation profile of Pectobacterium carotovorum 2A." Journal of the Belarusian State University. Biology, no. 3 (November 4, 2021): 71–77. http://dx.doi.org/10.33581/2521-1722-2021-3-71-77.
Повний текст джерелаDu, Chenghao. "The Power of Using Novel Nanopore Sequencing Technology for Diagnosis, Genomic and Pathological Studies of Covid-19." E3S Web of Conferences 271 (2021): 04024. http://dx.doi.org/10.1051/e3sconf/202127104024.
Повний текст джерелаDu, Chenghao. "The Power of Using Novel Nanopore Sequencing Technology for Diagnosis, Genomic and Pathological Studies of Covid-19." South Florida Journal of Development 2, no. 3 (July 8, 2021): 4014–28. http://dx.doi.org/10.46932/sfjdv2n3-017.
Повний текст джерелаDeynichenko, K. A., K. G. Ptitsyn, S. P. Radko, L. K. Kurbatov, I. V. Vakhrushev, I. V. Buromski, S. S. Markin, A. I. Archakov, A. V. Lisitsa, and E. A. Ponomarenko. "Splice variants of mRNA of cytochrome P450 genes: analysis by the nanopore sequencing method in human liver tissue and HepG2 cell line." Biomeditsinskaya Khimiya 68, no. 2 (2022): 117–25. http://dx.doi.org/10.18097/pbmc20226802117.
Повний текст джерелаTanaka, Mami, Sayaka Mino, Yoshitoshi Ogura, Tetsuya Hayashi, and Tomoo Sawabe. "Availability of Nanopore sequences in the genome taxonomy for Vibrionaceae systematics: Rumoiensis clade species as a test case." PeerJ 6 (June 18, 2018): e5018. http://dx.doi.org/10.7717/peerj.5018.
Повний текст джерелаRadko, S. P., L. K. Kurbatov, K. G. Ptitsyn, Y. Y. Kiseleva, E. A. Ponomarenko, A. V. Lisitsa, and A. I. Archakov. "Prospects for the use of third generation sequencers for quantitative profiling of transcriptome." Biomedical Chemistry: Research and Methods 1, no. 4 (2018): e00086. http://dx.doi.org/10.18097/bmcrm00086.
Повний текст джерелаDe Coster, Wouter, Endre Bakken Stovner, and Mojca Strazisar. "Methplotlib: analysis of modified nucleotides from nanopore sequencing." Bioinformatics 36, no. 10 (February 13, 2020): 3236–38. http://dx.doi.org/10.1093/bioinformatics/btaa093.
Повний текст джерелаIl Jun, Kang, Jangsup Moon, Taek Soo Kim, Chang Kyung Kang, Song Mi Moon, Kyoung-Ho Song, Pyoeng Gyun Choe, et al. "238. Direct identification of Bacterial Species with MinION Nanopore Sequencer In Clinical Specimens Suspected of Polybacterial Infection." Open Forum Infectious Diseases 6, Supplement_2 (October 2019): S136. http://dx.doi.org/10.1093/ofid/ofz360.313.
Повний текст джерелаJansen, Hans J., Ron P. Dirks, Michael Liem, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J. L. F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt, and Herman P. Spaink. "De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing." F1000Research 6 (May 3, 2017): 618. http://dx.doi.org/10.12688/f1000research.11146.1.
Повний текст джерелаMorsli, Madjid, Quentin Kerharo, Jeremy Delerce, Pierre-Hugues Roche, Lucas Troude, and Michel Drancourt. "Haemophilus influenzae Meningitis Direct Diagnosis by Metagenomic Next-Generation Sequencing: A Case Report." Pathogens 10, no. 4 (April 12, 2021): 461. http://dx.doi.org/10.3390/pathogens10040461.
Повний текст джерелаDavid, Matei, L. J. Dursi, Delia Yao, Paul C. Boutros, and Jared T. Simpson. "Nanocall: an open source basecaller for Oxford Nanopore sequencing data." Bioinformatics 33, no. 1 (September 10, 2016): 49–55. http://dx.doi.org/10.1093/bioinformatics/btw569.
Повний текст джерелаDing, Hongxu, Andrew D. Bailey, Miten Jain, Hugh Olsen, and Benedict Paten. "Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts." Bioinformatics 36, no. 19 (June 29, 2020): 4928–34. http://dx.doi.org/10.1093/bioinformatics/btaa601.
Повний текст джерелаSalakhov, R. R., M. V. Golubenko, E. N. Pavlukova, A. N. Kucher, N. P. Babushkina, N. R. Valiahmetov, A. V. Markov, E. O. Belyaeva, A. F. Kanev, and M. S. Nazarenko. "Experience in genetic testing of hypertrophic cardiomyopathy using nanopore DNA sequencing." Russian Journal of Cardiology 26, no. 10 (November 22, 2021): 4673. http://dx.doi.org/10.15829/1560-4071-2021-4673.
Повний текст джерелаFukasawa, Yoshinori, Luca Ermini, Hai Wang, Karen Carty, and Min-Sin Cheung. "LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data." G3: Genes|Genomes|Genetics 10, no. 4 (February 10, 2020): 1193–96. http://dx.doi.org/10.1534/g3.119.400864.
Повний текст джерелаNoone, J. Christopher, Karin Helmersen, Truls Michael Leegaard, Inge Skråmm, and Hege Vangstein Aamot. "Rapid Diagnostics of Orthopaedic-Implant-Associated Infections Using Nanopore Shotgun Metagenomic Sequencing on Tissue Biopsies." Microorganisms 9, no. 1 (January 4, 2021): 97. http://dx.doi.org/10.3390/microorganisms9010097.
Повний текст джерелаChen, Zhiao, and Xianghuo He. "Application of third-generation sequencing in cancer research." Medical Review 1, no. 2 (October 21, 2021): 150–71. http://dx.doi.org/10.1515/mr-2021-0013.
Повний текст джерелаIstace, Benjamin, Caroline Belser, Cyril Falentin, Karine Labadie, Franz Boideau, Gwenaëlle Deniot, Loeiz Maillet, et al. "Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case." Biology 10, no. 8 (July 30, 2021): 732. http://dx.doi.org/10.3390/biology10080732.
Повний текст джерелаde Siqueira, Guilherme Marcelino Viana, Felipe Marcelo Pereira-dos-Santos, Rafael Silva-Rocha, and María-Eugenia Guazzaroni. "Nanopore Sequencing Provides Rapid and Reliable Insight Into Microbial Profiles of Intensive Care Units." Frontiers in Public Health 9 (August 27, 2021). http://dx.doi.org/10.3389/fpubh.2021.710985.
Повний текст джерелаNeumann, Don, Anireddy S. N. Reddy, and Asa Ben-Hur. "RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data." BMC Bioinformatics 23, no. 1 (April 20, 2022). http://dx.doi.org/10.1186/s12859-022-04686-y.
Повний текст джерелаSilvestre-Ryan, Jordi, and Ian Holmes. "Pair consensus decoding improves accuracy of neural network basecallers for nanopore sequencing." Genome Biology 22, no. 1 (January 19, 2021). http://dx.doi.org/10.1186/s13059-020-02255-1.
Повний текст джерелаQi, Weihong, Andrea Colarusso, Miriam Olombrada, Ermenegilda Parrilli, Andrea Patrignani, Maria Luisa Tutino, and Macarena Toll-Riera. "New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies." Scientific Reports 9, no. 1 (November 11, 2019). http://dx.doi.org/10.1038/s41598-019-52832-z.
Повний текст джерелаSun, Kai, Yi Liu, Xin Zhou, Chuanlin Yin, Pengjun Zhang, Qianqian Yang, Lingfeng Mao, Xuping Shentu, and Xiaoping Yu. "Nanopore sequencing technology and its application in plant virus diagnostics." Frontiers in Microbiology 13 (July 25, 2022). http://dx.doi.org/10.3389/fmicb.2022.939666.
Повний текст джерелаLiu, Yang, Wojciech Rosikiewicz, Ziwei Pan, Nathaniel Jillette, Ping Wang, Aziz Taghbalout, Jonathan Foox, et al. "DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation." Genome Biology 22, no. 1 (October 18, 2021). http://dx.doi.org/10.1186/s13059-021-02510-z.
Повний текст джерелаRiaz, Nasir, Preston Leung, Kirston Barton, Martin A. Smith, Shaun Carswell, Rowena Bull, Andrew R. Lloyd, and Chaturaka Rodrigo. "Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants." BMC Genomics 22, no. 1 (March 2, 2021). http://dx.doi.org/10.1186/s12864-021-07460-1.
Повний текст джерелаKerkhof, Lee J. "Is Oxford Nanopore sequencing ready for analyzing complex microbiomes?" FEMS Microbiology Ecology 97, no. 3 (January 14, 2021). http://dx.doi.org/10.1093/femsec/fiab001.
Повний текст джерелаGoodwin, Sara, Robert Wappel, and W. Richard McCombie. "1D Genome Sequencing on the Oxford Nanopore MinION." Current Protocols in Human Genetics 94, no. 1 (July 2017). http://dx.doi.org/10.1002/cphg.39.
Повний текст джерелаJain, Miten, Hugh E. Olsen, Benedict Paten, and Mark Akeson. "The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community." Genome Biology 17, no. 1 (November 25, 2016). http://dx.doi.org/10.1186/s13059-016-1103-0.
Повний текст джерелаSultan, Madiha, and Anastassia Kanavarioti. "Nanopore device-based fingerprinting of RNA oligos and microRNAs enhanced with an Osmium tag." Scientific Reports 9, no. 1 (October 2, 2019). http://dx.doi.org/10.1038/s41598-019-50459-8.
Повний текст джерелаPrall, Trent M., Emma K. Neumann, Julie A. Karl, Cecilia G. Shortreed, David A. Baker, Hailey E. Bussan, Roger W. Wiseman, and David H. O’Connor. "Consistent ultra-long DNA sequencing with automated slow pipetting." BMC Genomics 22, no. 1 (March 12, 2021). http://dx.doi.org/10.1186/s12864-021-07500-w.
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