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Статті в журналах з теми "Oxford Nanopore sequencing"
Heikema, Astrid P., Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia D. Hiltemann, Willem de Koning, Robert Kraaij, et al. "Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota." Genes 11, no. 9 (September 21, 2020): 1105. http://dx.doi.org/10.3390/genes11091105.
Повний текст джерелаLin, Bo, Jianan Hui, and Hongju Mao. "Nanopore Technology and Its Applications in Gene Sequencing." Biosensors 11, no. 7 (June 30, 2021): 214. http://dx.doi.org/10.3390/bios11070214.
Повний текст джерелаLu, Hengyun, Francesca Giordano, and Zemin Ning. "Oxford Nanopore MinION Sequencing and Genome Assembly." Genomics, Proteomics & Bioinformatics 14, no. 5 (October 2016): 265–79. http://dx.doi.org/10.1016/j.gpb.2016.05.004.
Повний текст джерелаEisenstein, Michael. "Oxford Nanopore announcement sets sequencing sector abuzz." Nature Biotechnology 30, no. 4 (April 2012): 295–96. http://dx.doi.org/10.1038/nbt0412-295.
Повний текст джерелаSereika, Mantas, Rasmus Hansen Kirkegaard, Søren Michael Karst, Thomas Yssing Michaelsen, Emil Aarre Sørensen, Rasmus Dam Wollenberg, and Mads Albertsen. "Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing." Nature Methods 19, no. 7 (July 2022): 823–26. http://dx.doi.org/10.1038/s41592-022-01539-7.
Повний текст джерелаMacKenzie, Morgan, and Christos Argyropoulos. "An Introduction to Nanopore Sequencing: Past, Present, and Future Considerations." Micromachines 14, no. 2 (February 16, 2023): 459. http://dx.doi.org/10.3390/mi14020459.
Повний текст джерелаСалахов, Р. Р., М. В. Голубенко, Е. Н. Павлюкова, А. В. Марков, Н. П. Бабушкина, А. Ф. Канев, Н. Р. Валиахметов, and М. С. Назаренко. "Application of monomolecular sequencing technology to the diagnostics of hypertrophic cardiomyopathy." Nauchno-prakticheskii zhurnal «Medicinskaia genetika», no. 5(214) (May 29, 2020): 9–10. http://dx.doi.org/10.25557/2073-7998.2020.05.9-10.
Повний текст джерелаBurns, Adam, David Robert Bruce, Pauline Robbe, Adele Timbs, Basile Stamatopoulos, Ruth Clifford, Maria Lopopolo, Duncan Parkes, Kate E. Ridout, and Anna Schuh. "Detection of Clinically Relevant Molecular Alterations in Chronic Lymphocytic Leukemia (CLL) By Nanopore Sequencing." Blood 132, Supplement 1 (November 29, 2018): 1847. http://dx.doi.org/10.1182/blood-2018-99-110948.
Повний текст джерелаDumschott, Kathryn, Maximilian H.-W. Schmidt, Harmeet Singh Chawla, Rod Snowdon, and Björn Usadel. "Oxford Nanopore sequencing: new opportunities for plant genomics?" Journal of Experimental Botany 71, no. 18 (May 27, 2020): 5313–22. http://dx.doi.org/10.1093/jxb/eraa263.
Повний текст джерелаLeger, Adrien, and Tommaso Leonardi. "pycoQC, interactive quality control for Oxford Nanopore Sequencing." Journal of Open Source Software 4, no. 34 (February 28, 2019): 1236. http://dx.doi.org/10.21105/joss.01236.
Повний текст джерелаДисертації з теми "Oxford Nanopore sequencing"
Shikh, Khaled Saad. "Sequencing the genomic DNA of Anodonta anatina using Oxford nanopore technology." Thesis, Högskolan i Skövde, Institutionen för biovetenskap, 2020. http://urn.kb.se/resolve?urn=urn:nbn:se:his:diva-18874.
Повний текст джерелаPINZAUTI, DAVID. "Implementation of a flexible Oxford Nanopore sequencing platform for microbial genomics." Doctoral thesis, Università di Siena, 2021. http://hdl.handle.net/11365/1138520.
Повний текст джерелаMurphy, Trevor. "Expanding the Knowledgebase of Earth’s Microbiome Using Culture Dependent and Independent Methods." OpenSIUC, 2021. https://opensiuc.lib.siu.edu/theses/2837.
Повний текст джерелаLebó, Marko. "Přímá klasifikace metagenomických signálů ze sekvenace nanopórem." Master's thesis, Vysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií, 2019. http://www.nusl.cz/ntk/nusl-400964.
Повний текст джерелаHunt, Spencer Philip. "Whole-Genome Assembly of Atriplex hortensis L. Using OxfordNanopore Technology with Chromatin-Contact Mapping." BYU ScholarsArchive, 2019. https://scholarsarchive.byu.edu/etd/8580.
Повний текст джерелаCain, Elizabeth. "Targeted STR and SNP in-field sequencing by Oxford Nanopore MinION™ for the identification of an individual in a military scenario." Thesis, Cain, Elizabeth (2019) Targeted STR and SNP in-field sequencing by Oxford Nanopore MinION™ for the identification of an individual in a military scenario. Masters by Coursework thesis, Murdoch University, 2019. https://researchrepository.murdoch.edu.au/id/eprint/49630/.
Повний текст джерелаHu, Yue. "Microbial DNA Sequencing in Environmental Studies." Doctoral thesis, KTH, Skolan för bioteknologi (BIO), 2017. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-204897.
Повний текст джерелаYue Hu was supported by a scholarship from the China Scholarship Council (CSC #201206950024)
Yue Hu has been publishing papers under the name "Yue O. O. Hu".
QC 20170403
Tu, Siang-Jyun, and 塗翔鈞. "Allele sequence reconstruction via Oxford Nanopore Technologies and Next Generation Sequencing." Thesis, 2018. http://ndltd.ncl.edu.tw/handle/439rx7.
Повний текст джерела國立交通大學
生物資訊及系統生物研究所
107
Pharmacogenomics is the research of genetic variants and drug response. It aims to reduce side-effect and increase treatment effect by modifying prescription according to genetic variants of the patient. The developments of polymerase chain reaction, PCR, and next-generation sequencing, NGS, improve researchers understanding about the relation in genetic variants and drug response. Moreover, the long read-length oxford nanopore technologies, ONT, facilitates the reconstruction of an allele of patients and makes identifying haplotype more efficiently. To develop precision medicine in Taiwan, the construction of a Taiwan population-based alleles database (HapTW) is important. The build processes including gene selection, primers design, well experiment practice, storage of sequencing data, full-length allele analysis system, database management system, external resources annotation system, and user-friendly interface. In this study, we implemented and designed a full-length allele reconstruction pipeline: HLA_ONTu, a type annotation system with IPD-IMGT/HLA database, a simulation tool: SimulationTOOLKIT and the database schema of HapTW. We choose three HLA Class I genes as examples to demonstrate this study.
Dippenaar, A., S. N. Goossens, M. Grobbelaar, S. Oostvogels, B. Cuypers, K. Laukens, Conor J. Meehan, R. M. Warren, and Rie A. van. "Nanopore sequencing for Mycobacterium tuberculosis: a critical review of the literature, new developments and future opportunities." 2021. http://hdl.handle.net/10454/18521.
Повний текст джерелаThe next-generation short-read sequencing technologies that generate comprehensive, whole-genome data with single-nucleotide resolution have already advanced tuberculosis diagnosis, treatment, surveillance and source investigation. Their high costs, tedious and lengthy processes, and large equipment remain major hurdles for research use in high tuberculosis burden countries and implementation into routine care. The portable next-generation sequencing devices developed by Oxford Nanopore Technologies (ONT) are attractive alternatives due to their long-read sequence capability, compact low-cost hardware, and continued improvements in accuracy and throughput. A systematic review of the published literature demonstrated limited uptake of ONT sequencing in tuberculosis research and clinical care. Of the 12 eligible articles presenting ONT sequencing data on at least one Mycobacterium tuberculosis sample, four addressed software development for long read ONT sequencing data with potential applications for M. tuberculosis. Only eight studies presented results of ONT sequencing of M. tuberculosis, of which five performed whole-genome and three did targeted sequencing. Based on these findings, we summarize the standard processes, reflect on the current limitations of ONT sequencing technology, and the research needed to overcome the main hurdles. Summary: The low capital cost, portable nature and continued improvement in the performance of ONT sequencing make it an attractive option for sequencing for research and clinical care, but limited data is available on its application in the tuberculosis field. Important research investment is needed to unleash the full potential of ONT sequencing for tuberculosis research and care.
Частини книг з теми "Oxford Nanopore sequencing"
He, Ming, Xu Chi, and Jie Ren. "Applications of Oxford Nanopore Sequencing in Schizosaccharomyces pombe." In Methods in Molecular Biology, 97–116. New York, NY: Springer US, 2020. http://dx.doi.org/10.1007/978-1-0716-0868-5_9.
Повний текст джерелаKaramitros, Timokratis, and Gkikas Magiorkinis. "Multiplexed Targeted Sequencing for Oxford Nanopore MinION: A Detailed Library Preparation Procedure." In Methods in Molecular Biology, 43–51. New York, NY: Springer New York, 2017. http://dx.doi.org/10.1007/978-1-4939-7514-3_4.
Повний текст джерелаLiu, Huanle, Oguzhan Begik, and Eva Maria Novoa. "EpiNano: Detection of m6A RNA Modifications Using Oxford Nanopore Direct RNA Sequencing." In Methods in Molecular Biology, 31–52. New York, NY: Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1374-0_3.
Повний текст джерелаAl Kadi, Mohamad, and Daisuke Okuzaki. "Unfolding the Bacterial Transcriptome Landscape Using Oxford Nanopore Technology Direct RNA Sequencing." In Methods in Molecular Biology, 269–79. New York, NY: Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-2996-3_19.
Повний текст джерелаТези доповідей конференцій з теми "Oxford Nanopore sequencing"
Huang, Neng, Fan Nie, Peng Ni, Feng Luo, and Jianxin Wang. "An attention-based neural network basecaller for Oxford Nanopore sequencing data." In 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2019. http://dx.doi.org/10.1109/bibm47256.2019.8983231.
Повний текст джерелаGribchenko, E. S. "The study of transcriptomes of symbiotic tissue of pea using the third-generation sequencing technology Oxford Nanopore." In 2nd International Scientific Conference "Plants and Microbes: the Future of Biotechnology". PLAMIC2020 Organizing committee, 2020. http://dx.doi.org/10.28983/plamic2020.093.
Повний текст джерелаКечин, А. А., М. А. Корюков, В. С. Боробова, and М. Л. Филипенко. "FEATURES OF MUTATION DETECTION IN LONG-READ WHOLE GENOME SEQUENCING DATA." In Сборник трудов XVIII Российской конференции "РАСПРЕДЕЛЕННЫЕ ИНФОРМАЦИОННО-ВЫЧИСЛИТЕЛЬНЫЕ РЕСУРСЫ". Crossref, 2023. http://dx.doi.org/10.25743/dir.2022.16.63.019.
Повний текст джерелаAmin, Mohammad Ruhul, Steven Skiena, and Michael C. Schatz. "NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads." In 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). IEEE, 2016. http://dx.doi.org/10.1109/iccabs.2016.7802776.
Повний текст джерелаBoughattas, Sonia, Dana Al Batesh, Bruno Giraldes, Asmaa Al-Thani, and Fatiha Benslimane. "Optimized DNA Extracting Method for Oxford Nanopore- Long reads Sequencing from Marine samples." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0136.
Повний текст джерела"Whole genome sequencing and assembly of Saccharomyces cerevisiae genomes using Oxford Nanopore data." In Bioinformatics of Genome Regulation and Structure/ Systems Biology. institute of cytology and genetics siberian branch of the russian academy of science, Novosibirsk State University, 2020. http://dx.doi.org/10.18699/bgrs/sb-2020-037.
Повний текст джерела"Applicability of the Oxford Nanopore sequencing technology to the analysis of DNA modifications." In Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2022) :. Institute of Cytology and Genetics, the Siberian Branch of the Russian Academy of Sciences, 2022. http://dx.doi.org/10.18699/sbb-2022-118.
Повний текст джерелаHess, A., A. Caulton, R. Clarke, R. Brauning, K. McRae, and S. Clarke. "253. Expanding the genomic toolkit: what does Oxford Nanopore sequencing have to offer?" In World Congress on Genetics Applied to Livestock Production. The Netherlands: Wageningen Academic Publishers, 2022. http://dx.doi.org/10.3920/978-90-8686-940-4_253.
Повний текст джерелаBenslimane, Fatiha M., Hebah Al Khatib, Dana Albatesh, Ola Al-Jamal, Sonia Boughattas, Asmaa A. Althani, and Hadi M. Yassine. "Nanopore Sequencing SARS-CoV-2 Genome in Qatar." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0289.
Повний текст джерелаDe Block, T., I. De Baetselier, S. Abdellati, J. Laumen, S. Manoharan-Basil, C. Kenyon, and D. Van den Bossche. "P207 Evaluation of Oxford Nanopore MinION sequencing to predict antimicrobial resistance profiles in clinical N. gonorrhoeae strains." In Abstracts for the STI & HIV World Congress, July 14–17 2021. BMJ Publishing Group Ltd, 2021. http://dx.doi.org/10.1136/sextrans-2021-sti.296.
Повний текст джерела