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Статті в журналах з теми "Lllumina Next Gen sequencing"
Bird, Christianne. "Next-Gen Sequencing Services." Genetic Engineering & Biotechnology News 32, no. 9 (May 2012): 16. http://dx.doi.org/10.1089/gen.32.9.05.
Повний текст джерелаLabant, MaryAnn. "What's Next for Next-Gen Sequencing?" Clinical OMICs 2, no. 2 (February 2015): 14–17. http://dx.doi.org/10.1089/clinomi.02.02.08.
Повний текст джерелаLabant, MaryAnn. "What's Next for Next-Gen Sequencing?" Genetic Engineering & Biotechnology News 35, no. 3 (February 2015): 1, 16–19. http://dx.doi.org/10.1089/gen.35.03.02.
Повний текст джерелаBready, Barrett, and John Thompson. "Future of Next-Gen Sequencing." Genetic Engineering & Biotechnology News 34, no. 7 (April 1, 2014): 10–11. http://dx.doi.org/10.1089/gen.34.07.05.
Повний текст джерелаLiszewski, Kathy. "The Next Next Thing in Sequencing." Genetic Engineering & Biotechnology News 36, no. 1 (January 2016): 1, 26–27. http://dx.doi.org/10.1089/gen.36.01.02.
Повний текст джерелаRoberts, Josh P. "Creative Approaches to Next-Gen Sequencing." Genetic Engineering & Biotechnology News 33, no. 5 (March 2013): 23–25. http://dx.doi.org/10.1089/gen.33.5.13.
Повний текст джерелаBaker, Shawn C. "Next-Generation Sequencing Challenges." Genetic Engineering & Biotechnology News 37, no. 3 (February 2017): 1, 14–15, 17. http://dx.doi.org/10.1089/gen.37.03.01.
Повний текст джерелаBaker, Shawn C. "Advances in Next-Generation Sequencing." Genetic Engineering & Biotechnology News 36, no. 17 (October 2016): 1, 20–22. http://dx.doi.org/10.1089/gen.36.17.01.
Повний текст джерелаPotera, Carol. "CLC Bio Tackles Next-Gen Sequencing Data." Genetic Engineering & Biotechnology News 31, no. 1 (January 2011): 14–15. http://dx.doi.org/10.1089/gen.31.1.05.
Повний текст джерелаRussell, John. "Data Analysis: Today's Next-Gen Sequencing Imperative." Genetic Engineering & Biotechnology News 33, no. 15 (September 2013): 26, 27, 29. http://dx.doi.org/10.1089/gen.33.15.12.
Повний текст джерелаДисертації з теми "Lllumina Next Gen sequencing"
Stromberg, Michael Peter. "Enabling high-throughput sequencing data analysis with MOSAIK." Thesis, Boston College, 2010. http://hdl.handle.net/2345/1332.
Повний текст джерелаDuring the last few years, numerous new sequencing technologies have emerged that require tools that can process large amounts of read data quickly and accurately. Regardless of the downstream methods used, reference-guided aligners are at the heart of all next-generation analysis studies. I have developed a general reference-guided aligner, MOSAIK, to support all current sequencing technologies (Roche 454, Illumina, Applied Biosystems SOLiD, Helicos, and Sanger capillary). The calibrated alignment qualities calculated by MOSAIK allow the user to fine-tune the alignment accuracy for a given study. MOSAIK is a highly configurable and easy-to-use suite of alignment tools that is used in hundreds of labs worldwide. MOSAIK is an integral part of our genetic variant discovery pipeline. From SNP and short-INDEL discovery to structural variation discovery, alignment accuracy is an essential requirement and enables our downstream analyses to provide accurate calls. In this thesis, I present three major studies that were formative during the development of MOSAIK and our analysis pipeline. In addition, I present a novel algorithm that identifies mobile element insertions (non-LTR retrotransposons) in the human genome using split-read alignments in MOSAIK. This algorithm has a low false discovery rate (4.4 %) and enabled our group to be the first to determine the number of mobile elements that differentially occur between any two individuals
Thesis (PhD) — Boston College, 2010
Submitted to: Boston College. Graduate School of Arts and Sciences
Discipline: Biology
Lew, Ryan. "Using next-gen sequencing to assist a conservation hatchery| A SNP panel for the genetic management of endangered Delta Smelt." Thesis, University of California, Davis, 2015. http://pqdtopen.proquest.com/#viewpdf?dispub=1590837.
Повний текст джерелаThe federally threatened Delta Smelt has been cultured in a conservation hatchery since 2008 in response to significant declines in the wild. The refuge relies on accurate, efficacious, and repeatable molecular techniques to help maintain the population's overall genetic diversity and minimize inbreeding. We have created a panel of single nucleotide polymorphisms (SNPs) to support broodstock pedigree reconstruction and improve upon current genetic management with microsatellites. Properly implemented, a SNP panel is a more powerful, repeatable, and higher-throughput method. Its use will streamline the management of the captive Delta Smelt population, which is performed in near real-time throughout the spawning season (February - May). For the SNP discovery, we sequenced 27 broodstock samples from the 2012 spawn using restriction site associated DNA sequencing (RAD-seq). We then created a linkage map by genotyping three single pair crosses at 2317 newly discovered loci with RAD-seq. We successfully mapped 1123 loci and identified 26 linkage groups. Fluidigm SNPtype genotyping assays were developed for 104 mapped loci selected for minor allele frequency (>20%), neutrality (Hardy-Weinberg equilibrium), and marker location. Candidates for the genotyping panel were evaluated on a 96x96 Integrated Fluidic Circuit and tested for marker accuracy and ability to accurately assign parentage. When applied in conjunction with mating records, we found that a panel of 24 independent SNPs successfully assigned 100% of tested offspring if all samples were genotyped at a minimum of 18 loci.
Sarma, Mimosa. "Microfluidic platforms for Transcriptomics and Epigenomics." Diss., Virginia Tech, 2019. http://hdl.handle.net/10919/90294.
Повний текст джерелаDoctor of Philosophy
This is the era of personalized medicine which means that we are no longer looking at one-size-fits-all therapies. We are rather focused on finding therapies that are tailormade to every individual’s personal needs. This has become more and more essential in the context of serious diseases like cancer where therapies have a lot of side-effects. To provide tailor-made therapy to patients, it is important to know how each patient is different from another. This difference can be found from studying how the individual is unique or different at the cellular level i.e. by looking into the contents of the cell like DNA, RNA, and chromatin. In this thesis, we discussed a number of projects which we can contribute to advancement in this field of personalized medicine. Our first project, MID-RNA-seq offers a new platform for studying the information contained in the RNA of a single cell. This platform has enough potential to be scaled up and automated into an excellent platform for studying the RNA of rare or limited patient samples. The second project discussed in this thesis involves studying the RNA of innate immune cells which defend our bodies against pathogens. The RNA data that we have unearthed in this project provides an immense scope for understanding innate immunity. This data provides our biologist collaborators the scope to test various pathways in innate immune cells and their roles in innate immune modulation. Our third project discusses a method to produce an enzyme called ‘Tn5’ which is necessary for studying the sequence of DNA. This enzyme which is commercially available has a very high cost associated with it but because we produced it in the lab, we were able to greatly reduce costs. The fourth project discussed involves the study of chromatin structure in cells and enables us to understand how our lifestyle choices change the expression or repression of genes in the cell, a study called epigenetics. The findings of this study would enable us to study epigenomic profiles from limited patient samples. Overall, our projects have enabled us to understand the information from cells especially when we have limited cell numbers. Once we have all this information we can compare how each patient is different from others. The future brings us closer to putting this into clinical practice and assigning different therapies to patients based on such data.
Burr, Andrew John. "PISEQ ANALYIS IDENTIFIES NOVEL PIRNA IN SOMATIC CELLS THROUGH RNA-SEQ GUIDED FUNCTIONAL ANNOTATION AND GENOMIC ANALYSIS." Case Western Reserve University School of Graduate Studies / OhioLINK, 2017. http://rave.ohiolink.edu/etdc/view?acc_num=case1501150746104887.
Повний текст джерелаWorch, Lisa [Verfasser], Ole [Akademischer Betreuer] Ammerpohl, and Norbert [Gutachter] Arnold. "Validierung von durch Next Generation Sequencing ermittelten Mutationen im Androgenrezeptor-Gen und in potenziellen Co-Faktoren des Androgenrezeptors sowie exemplarische funktionelle Betrachtungen / Lisa Worch ; Gutachter: Norbert Arnold ; Betreuer: Ole Ammerpohl." Kiel : Universitätsbibliothek Kiel, 2019. http://d-nb.info/1203624743/34.
Повний текст джерелаShen, Yingjia. "Genome wide studies of mRNA 3'-end processing signals and alternative polyadenylation in plants." Miami University / OhioLINK, 2009. http://rave.ohiolink.edu/etdc/view?acc_num=miami1260664627.
Повний текст джерелаFujimoto, Masaki Stanley. "Graph-Based Whole Genome Phylogenomics." BYU ScholarsArchive, 2020. https://scholarsarchive.byu.edu/etd/8461.
Повний текст джерелаStirling, Erinne. "Nutrient Cycling Between Litters and Soil after Fire in Native Woodland and Pinus radiata Plantations." Thesis, 2019. http://hdl.handle.net/2440/119897.
Повний текст джерелаThesis (Ph.D.) -- University of Adelaide, School of Agriculture, Food & Wine, 2019
"Design, Analytics and Quality Assurance for Emerging Personalized Clinical Diagnostics Based on Next-Gen Sequencing." Doctoral diss., 2014. http://hdl.handle.net/2286/R.I.24837.
Повний текст джерелаDissertation/Thesis
Ph.D. Industrial Engineering 2014
Musil, Zdeněk. "Molekulárně biologická analýza feochromocytomu a paragangliomu." Doctoral thesis, 2019. http://www.nusl.cz/ntk/nusl-405530.
Повний текст джерелаЧастини книг з теми "Lllumina Next Gen sequencing"
Gunaratne, Preethi H., Cristian Coarfa, Benjamin Soibam, and Arpit Tandon. "miRNA Data Analysis: Next-Gen Sequencing." In Methods in Molecular Biology, 273–88. Totowa, NJ: Humana Press, 2011. http://dx.doi.org/10.1007/978-1-61779-427-8_19.
Повний текст джерелаMichel, Agnès H., and Benoît Kornmann. "SAturated Transposon Analysis in Yeast (SATAY) for Deep Functional Mapping of Yeast Genomes." In Methods in Molecular Biology, 349–79. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2257-5_20.
Повний текст джерелаMaria Boldura, Oana, Cristina Petrine, Alin Mihu, and Cornel Balta. "Latest Implications of Next-Gen Sequencing in Diagnosis of Acute and Chronic Myeloid Leukemia." In Biochemical Analysis Tools - Methods for Bio-Molecules Studies. IntechOpen, 2020. http://dx.doi.org/10.5772/intechopen.92068.
Повний текст джерелаR. Terebelo, Howard, and Leo Reap. "Prognostic and Predictive Factors in Newly Diagnosed Multiple Myeloma Patients with Early Mortality with Prediction Matrix and Three and Five-Year Overall Survival." In Multiple Myeloma [Working Title]. IntechOpen, 2021. http://dx.doi.org/10.5772/intechopen.95819.
Повний текст джерелаТези доповідей конференцій з теми "Lllumina Next Gen sequencing"
Jeong-Hyeon Choi, Dong-Sung Ryu, S. Sureshchandra, Huidong Shi, and Hwan-Gue Cho. "A software package for next-gen bisulfite sequencing data analysis." In 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW). IEEE, 2011. http://dx.doi.org/10.1109/bibmw.2011.6112561.
Повний текст джерелаSampson, Kimberly. "Novel pesticidal protein discovery: What's next in a post-next-gen sequencing world?" In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.107775.
Повний текст джерелаPutnam, Emily, Lam Nguyen, Hunter Chung, Peisheng Shi, Xueguang Sun, Marc E. Van Eden, and Xi-Yu Jia. "Abstract 2956: A targeted bisulfite sequencing method combining microfluidics-based PCR with Next-Gen sequencing." In Proceedings: AACR 106th Annual Meeting 2015; April 18-22, 2015; Philadelphia, PA. American Association for Cancer Research, 2015. http://dx.doi.org/10.1158/1538-7445.am2015-2956.
Повний текст джерелаZhou, Xiaochuan, Qi Zhu, and Chris Hebel. "Abstract 3582: A simple multiplex PCR approach for target enrichment in next-gen sequencing." In Proceedings: AACR Annual Meeting 2014; April 5-9, 2014; San Diego, CA. American Association for Cancer Research, 2014. http://dx.doi.org/10.1158/1538-7445.am2014-3582.
Повний текст джерелаDunn, Andrew R., Shuqiang Li, Cecilia A. Fernandez, and Anthony P. Shuber. "Abstract 43: Detection of bladder cancer-associated gene methylation using next-gen bisulfite sequencing." In Proceedings: AACR 104th Annual Meeting 2013; Apr 6-10, 2013; Washington, DC. American Association for Cancer Research, 2013. http://dx.doi.org/10.1158/1538-7445.am2013-43.
Повний текст джерелаLeonard, Jack T. "Abstract 1156: Applying targeted Next-Gen Sequencing and miRNA expression profiling for cancer biomarker discovery." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-1156.
Повний текст джерелаIsaksson, Magnus, Henrik Johansson, Fredrik Roos, Elin Falk, Lotte Moens, Olle Ericsson, and Mats Nilsson. "Abstract 1158: Single step multiplex amplification and barcoding of FFPE samples for Next-Gen sequencing." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-1158.
Повний текст джерелаAlexander, Jessica, Ryan Drennan, Ann Meyer, Jessica Xu, Matthew L. Poulin, and Winston Timp. "Abstract 1057: Characterization of methylation patterns in cancer tissue shown by targeted Next-Gen bisulfite sequencing." In Proceedings: AACR 106th Annual Meeting 2015; April 18-22, 2015; Philadelphia, PA. American Association for Cancer Research, 2015. http://dx.doi.org/10.1158/1538-7445.am2015-1057.
Повний текст джерелаMillholland, John M., Shuqiang Li, Cecilia A. Fernandez, and Anthony P. Shuber. "Abstract 2093: Next-gen deep sequencing improves FGFR3 mutation detection in the urine of bladder cancer patients." In Proceedings: AACR 103rd Annual Meeting 2012‐‐ Mar 31‐Apr 4, 2012; Chicago, IL. American Association for Cancer Research, 2012. http://dx.doi.org/10.1158/1538-7445.am2012-2093.
Повний текст джерелаFrimer, Marina, Chang Sun, Thomas McAndrew, Benjamin C. Smith, Zigui Chen, Gary L. Goldberg, Ana C. Rodriguez, and Robert D. Burk. "Abstract 4022: HPV16 CpG methylation patterns determined by next-gen bisulfite sequencing and association with cervix precancer/cancer." In Proceedings: AACR 103rd Annual Meeting 2012‐‐ Mar 31‐Apr 4, 2012; Chicago, IL. American Association for Cancer Research, 2012. http://dx.doi.org/10.1158/1538-7445.am2012-4022.
Повний текст джерелаЗвіти організацій з теми "Lllumina Next Gen sequencing"
Zengler, Karsten, Bernhard Palsson, and Nathan Lewis. Next-Gen3: Sequencing, Modeling, and Advanced Biofuels - Final Technical Report. Office of Scientific and Technical Information (OSTI), December 2017. http://dx.doi.org/10.2172/1413757.
Повний текст джерела