Статті в журналах з теми "Ion-RNA Interactions"
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Ознайомтеся з топ-50 статей у журналах для дослідження на тему "Ion-RNA Interactions".
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Yu, Tao, Yuhong Zhu, Zhaojian He, and Shi-Jie Chen. "Predicting Molecular Crowding Effects in Ion–RNA Interactions." Journal of Physical Chemistry B 120, no. 34 (August 12, 2016): 8837–44. http://dx.doi.org/10.1021/acs.jpcb.6b05625.
Повний текст джерелаEdwards, Thomas E., and Snorri Th Sigurdsson. "EPR spectroscopic analysis of TAR RNA–metal ion interactions." Biochemical and Biophysical Research Communications 303, no. 2 (April 2003): 721–25. http://dx.doi.org/10.1016/s0006-291x(03)00411-x.
Повний текст джерелаFingerhut, Benjamin P., Eva M. Bruening, Jakob Schauss, Torsten Siebert, and Thomas Elsaesser. "Interactions of RNA and Water probed by 2D-IR Spectroscopy." EPJ Web of Conferences 205 (2019): 10003. http://dx.doi.org/10.1051/epjconf/201920510003.
Повний текст джерелаEdwards, Thomas E., Tamara M. Okonogi, and Snorri Th Sigurdsson. "Investigation of RNA-Protein and RNA-Metal Ion Interactions by Electron Paramagnetic Resonance Spectroscopy." Chemistry & Biology 9, no. 6 (June 2002): 699–706. http://dx.doi.org/10.1016/s1074-5521(02)00150-3.
Повний текст джерелаNguyen, Hung T., Naoto Hori, and D. Thirumalai. "Theory and simulations for RNA folding in mixtures of monovalent and divalent cations." Proceedings of the National Academy of Sciences 116, no. 42 (September 30, 2019): 21022–30. http://dx.doi.org/10.1073/pnas.1911632116.
Повний текст джерелаLe, Shu-Yun, Jih-H. Chen, N. Pattabiraman, and Jacob V. Maizel. "Ion-RNA Interactions in the RNA Pseudoknot of a Ribosomal Frameshifting Site: Molecular Modeling Studies." Journal of Biomolecular Structure and Dynamics 16, no. 1 (August 1998): 1–11. http://dx.doi.org/10.1080/07391102.1998.10508221.
Повний текст джерелаWu, Yuan-Yan, Zhong-Liang Zhang, Jin-Si Zhang, Xiao-Long Zhu, and Zhi-Jie Tan. "Multivalent ion-mediated nucleic acid helix-helix interactions: RNA versus DNA." Nucleic Acids Research 43, no. 12 (May 27, 2015): 6156–65. http://dx.doi.org/10.1093/nar/gkv570.
Повний текст джерелаKhan, Mateen A. "Analysis of Ion and pH Effects on Iron Response Element (IRE) and mRNA-Iron Regulatory Protein (IRP1) Interactions." Current Chemical Biology 14, no. 2 (November 19, 2020): 88–99. http://dx.doi.org/10.2174/2212796814999200604121937.
Повний текст джерелаLemkul, Justin A. "Same fold, different properties: polarizable molecular dynamics simulations of telomeric and TERRA G-quadruplexes." Nucleic Acids Research 48, no. 2 (December 6, 2019): 561–75. http://dx.doi.org/10.1093/nar/gkz1154.
Повний текст джерелаKleiman, Diego E., Nawavi Naleem, and Serdal Kirmizialtin. "Exploring the Ion-Mediated RNA Interactions of a Helix-Junction-Helix RNA Model through Well-Tempered Metadynamics Simulations." Biophysical Journal 118, no. 3 (February 2020): 68a—69a. http://dx.doi.org/10.1016/j.bpj.2019.11.549.
Повний текст джерелаKumar, Anil. "Ionic interactions in aqueous mixtures of hydrophilic and -phobic ions." Pure and Applied Chemistry 80, no. 6 (January 1, 2008): 1267–79. http://dx.doi.org/10.1351/pac200880061267.
Повний текст джерелаTrachman, Robert J., and Adrian R. Ferré-D'Amaré. "An uncommon [K+(Mg2+)2] metal ion triad imparts stability and selectivity to the Guanidine-I riboswitch." RNA 27, no. 10 (July 13, 2021): 1257–64. http://dx.doi.org/10.1261/rna.078824.121.
Повний текст джерелаSzulc, Natalia A., Zuzanna Mackiewicz, Janusz M. Bujnicki, and Filip Stefaniak. "fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions." PLOS Computational Biology 18, no. 6 (June 2, 2022): e1009783. http://dx.doi.org/10.1371/journal.pcbi.1009783.
Повний текст джерелаLiu, Chuanliang, Ljiljana Paša Tolić, Steven A. Hofstadler, Amy C. Harms, Richard D. Smith, ChulHee Kang, and Nanda Sinha. "Probing RegA/RNA Interactions Using Electrospray Ionization–Fourier Transform Ion Cyclotron Resonance–Mass Spectrometry." Analytical Biochemistry 262, no. 1 (August 1998): 67–76. http://dx.doi.org/10.1006/abio.1998.2753.
Повний текст джерелаEtzion-Fuchs, Anat, David A. Todd, and Mona Singh. "dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains." Nucleic Acids Research 49, no. 13 (May 17, 2021): e78-e78. http://dx.doi.org/10.1093/nar/gkab356.
Повний текст джерелаGräf, S., R. Przybilski, G. Steger, and C. Hammann. "A database search for hammerhead ribozyme motifs." Biochemical Society Transactions 33, no. 3 (June 1, 2005): 477–78. http://dx.doi.org/10.1042/bst0330477.
Повний текст джерелаFingerhut, Benjamin P., Jakob Schauss, Achintya Kundu, and Thomas Elsaesser. "Aqueous Contact Ion Pairs of Phosphate Groups with Na+, Ca2+ and Mg2+ – Structural Discrimination by Femtosecond Infrared Spectroscopy and Molecular Dynamics Simulations." Zeitschrift für Physikalische Chemie 234, no. 7-9 (August 27, 2020): 1453–74. http://dx.doi.org/10.1515/zpch-2020-1614.
Повний текст джерелаBuskiewicz, Iwona, Malgorzata Giel-Pietraszuk, Piotr Mucha, Piotr Rekowski, Gotfryd Kupryszewski, and Miroslawa Z. Barciszewska. "Interaction of HIV Tat Peptides With tRNAPhe from Yeast." Collection of Czechoslovak Chemical Communications 63, no. 6 (1998): 842–50. http://dx.doi.org/10.1135/cccc19980842.
Повний текст джерелаXu, Xiaochen, Michaela Egger, Hao Chen, Karolina Bartosik, Ronald Micura, and Aiming Ren. "Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition." Nucleic Acids Research 49, no. 12 (June 14, 2021): 7139–53. http://dx.doi.org/10.1093/nar/gkab486.
Повний текст джерелаHuang, Lin, Jia Wang, Andrew M. Watkins, Rhiju Das, and David M. J. Lilley. "Structure and ligand binding of the glutamine-II riboswitch." Nucleic Acids Research 47, no. 14 (June 19, 2019): 7666–75. http://dx.doi.org/10.1093/nar/gkz539.
Повний текст джерелаMarkelova, O. Yu, L. N. Buryanovsky, O. E. Kitam, K. F. Krasnova, and A. D. Shved. "Influence of ion interactions on the conformation of ribozyme specific to HIV-1 tat-RNA in solution." Biopolymers and Cell 18, no. 5 (September 20, 2002): 452–54. http://dx.doi.org/10.7124/bc.000627.
Повний текст джерелаLiu, Bin, Yuhong Zuo та Thomas A. Steitz. "Structures of E. coli σS-transcription initiation complexes provide new insights into polymerase mechanism". Proceedings of the National Academy of Sciences 113, № 15 (28 березня 2016): 4051–56. http://dx.doi.org/10.1073/pnas.1520555113.
Повний текст джерелаLee, Ji-Hye, Intekhab Alam, Kang Rok Han, Sunyoung Cho, Sungho Shin, Seokha Kang, Jai Myung Yang, and Kyung Hyun Kim. "Crystal structures of murine norovirus-1 RNA-dependent RNA polymerase." Journal of General Virology 92, no. 7 (July 1, 2011): 1607–16. http://dx.doi.org/10.1099/vir.0.031104-0.
Повний текст джерелаKaye, Nicholas M., Nathan H. Zahler, Eric L. Christian, and Michael E. Harris. "Conservation of Helical Structure Contributes to Functional Metal Ion Interactions in the Catalytic Domain of Ribonuclease P RNA." Journal of Molecular Biology 324, no. 3 (November 2002): 429–42. http://dx.doi.org/10.1016/s0022-2836(02)01094-x.
Повний текст джерелаSun, Yunhao, Limin Qiu, Jinjin Chen, Yao Wang, Jun Qian, Lirong Huang, and Haitao Ma. "Construction of circRNA-Associated ceRNA Network Reveals Novel Biomarkers for Esophageal Cancer." Computational and Mathematical Methods in Medicine 2020 (August 28, 2020): 1–12. http://dx.doi.org/10.1155/2020/7958362.
Повний текст джерелаBonneau, Eric, and Pascale Legault. "NMR Localization of Divalent Cations at the Active Site of theNeurosporaVS Ribozyme Provides Insights into RNA–Metal-Ion Interactions." Biochemistry 53, no. 3 (January 10, 2014): 579–90. http://dx.doi.org/10.1021/bi401484a.
Повний текст джерелаRooj, Arun K., Zhiyong Liu, Carmel M. McNicholas та Catherine M. Fuller. "Physical and functional interactions between a glioma cation channel and integrin-β1 require α-actinin". American Journal of Physiology-Cell Physiology 309, № 5 (1 вересня 2015): C308—C319. http://dx.doi.org/10.1152/ajpcell.00036.2015.
Повний текст джерелаMitash, Nilay, Joshua E. Donovan, and Agnieszka Swiatecka-Urban. "The Role of MicroRNA in the Airway Surface Liquid Homeostasis." International Journal of Molecular Sciences 21, no. 11 (May 28, 2020): 3848. http://dx.doi.org/10.3390/ijms21113848.
Повний текст джерелаXu, Jiayang, Qiansi Chen, Pingping Liu, Wei Jia, Zheng Chen, and Zicheng Xu. "Integration of mRNA and miRNA Analysis Reveals the Molecular Mechanism Underlying Salt and Alkali Stress Tolerance in Tobacco." International Journal of Molecular Sciences 20, no. 10 (May 14, 2019): 2391. http://dx.doi.org/10.3390/ijms20102391.
Повний текст джерелаde Assis Filho, F. M., O. R. Paguio, J. L. Sherwood, and C. M. Deom. "Symptom induction by Cowpea chlorotic mottle virus on Vigna unguiculata is determined by amino acid residue 151 in the coat protein." Journal of General Virology 83, no. 4 (April 1, 2002): 879–83. http://dx.doi.org/10.1099/0022-1317-83-4-879.
Повний текст джерелаVijayaraghavan, Bhooma, Giri Padmanabhan, and Kumaresan Ramanathan. "Assessment of siRNA as a therapeutic molecule in Transient Receptor Potential Channel 5 gene silencing: a computational approach." Biomedical Research and Therapy 5, no. 1 (January 19, 2018): 1911–22. http://dx.doi.org/10.15419/bmrat.v5i1.405.
Повний текст джерелаLiao, Zengwei, Takuji Oyama, Yumi Kitagawa, Katsuo Katayanagi, Kosuke Morikawa, and Masayuki Oda. "Pivotal role of a conserved histidine in Escherichia coli ribonuclease HI as proposed by X-ray crystallography." Acta Crystallographica Section D Structural Biology 78, no. 3 (February 23, 2022): 390–98. http://dx.doi.org/10.1107/s2059798322000870.
Повний текст джерелаPagliari, Laura, Giulia Tarquini, Alberto Loschi, Sara Buoso, Gregor Kapun, Paolo Ermacora, and Rita Musetti. "Gimme shelter: three-dimensional architecture of the endoplasmic reticulum, the replication site of grapevine Pinot gris virus." Functional Plant Biology 48, no. 10 (2021): 1074. http://dx.doi.org/10.1071/fp21084.
Повний текст джерелаFerrero, Diego S., Michela Falqui, and Nuria Verdaguer. "Snapshots of a Non-Canonical RdRP in Action." Viruses 13, no. 7 (June 28, 2021): 1260. http://dx.doi.org/10.3390/v13071260.
Повний текст джерелаGuo, Shaoke, Mengli Cao, Xingdong Wang, Lin Xiong, Xiaoyun Wu, Pengjia Bao, Min Chu, et al. "Changes in Transcriptomic Profiles in Different Reproductive Periods in Yaks." Biology 10, no. 12 (November 25, 2021): 1229. http://dx.doi.org/10.3390/biology10121229.
Повний текст джерелаPeng, Guiqing, Yan Yan, Chengliang Zhu, Shiqun Wang, Xiaohong Yan, Lili Lu, Wei Li, et al. "Borna Disease Virus P Protein Affects Neural Transmission through Interactions with Gamma-Aminobutyric Acid Receptor-Associated Protein." Journal of Virology 82, no. 24 (September 24, 2008): 12487–97. http://dx.doi.org/10.1128/jvi.00877-08.
Повний текст джерелаAndreeva, Tatyana V., Natalya V. Maluchenko, Anastasiia L. Sivkina, Oleg V. Chertkov, Maria E. Valieva, Elena Y. Kotova, Mikhail P. Kirpichnikov, Vasily M. Studitsky, and Alexey V. Feofanov. "Na+ and K+ Ions Differently Affect Nucleosome Structure, Stability, and Interactions with Proteins." Microscopy and Microanalysis 28, no. 1 (December 1, 2021): 243–53. http://dx.doi.org/10.1017/s1431927621013751.
Повний текст джерелаNeuman, Benjamin W., Jeremiah S. Joseph, Kumar S. Saikatendu, Pedro Serrano, Amarnath Chatterjee, Margaret A. Johnson, Lujian Liao, et al. "Proteomics Analysis Unravels the Functional Repertoire of Coronavirus Nonstructural Protein 3." Journal of Virology 82, no. 11 (March 26, 2008): 5279–94. http://dx.doi.org/10.1128/jvi.02631-07.
Повний текст джерелаAcharya, Parag, and Jyoti Chattopadhyaya. "Electrostatic cross-modulation of the pseudoaromatic character in single-stranded RNA by nearest-neighbor interactions." Pure and Applied Chemistry 77, no. 1 (January 1, 2005): 291–311. http://dx.doi.org/10.1351/pac200577010291.
Повний текст джерелаHwang, William L., Karthik Jagadeesh, Jimmy Guo, Hannah I. Hoffman, Orr Ashenberg, Eugene Drokhlyansky, Nicholas Van Wittenberghe, et al. "Single-nucleus RNA-seq of frozen archival primary pancreatic ductal adenocarcinoma uncovers multi-compartment intratumoral heterogeneity associated with neoadjuvant treatment." Journal of Clinical Oncology 38, no. 15_suppl (May 20, 2020): 4633. http://dx.doi.org/10.1200/jco.2020.38.15_suppl.4633.
Повний текст джерелаWan Othman, Wan N. Nazneem, Fatimah Salim, Nor N. Abdullah, Syahrul I. Abu Bakar, Khalijah Awang, Lalith Jayasinghe та Nor H. Ismail. "(R)-13aα-Densiindolizidine, A New Phenanthroindolizidine Alkaloid From Cryptocarya densiflora Blume (Lauraceae) and Molecular Docking Against SARS-CoV-2". Natural Product Communications 17, № 8 (серпень 2022): 1934578X2211142. http://dx.doi.org/10.1177/1934578x221114227.
Повний текст джерелаLopez, Melany N., Timothy J. Wilding, and James E. Huettner. "Q/R site interactions with the M3 helix in GluK2 kainate receptor channels revealed by thermodynamic mutant cycles." Journal of General Physiology 142, no. 3 (August 12, 2013): 225–39. http://dx.doi.org/10.1085/jgp.201311000.
Повний текст джерелаStevens, Adam, Taqua Khashkhusha, Megan Sharps, Terence Garner, Peter T. Ruane, and John D. Aplin. "The Human Early Maternal–Embryonic Interactome." Reproductive Medicine 4, no. 1 (February 16, 2023): 40–56. http://dx.doi.org/10.3390/reprodmed4010006.
Повний текст джерелаBiedermann, Johann, Sebastian Braunbeck, Andrew J. R. Plested, and Han Sun. "Nonselective cation permeation in an AMPA-type glutamate receptor." Proceedings of the National Academy of Sciences 118, no. 8 (February 18, 2021): e2012843118. http://dx.doi.org/10.1073/pnas.2012843118.
Повний текст джерелаLi, Hui, Yaxin Yang, Qianlan Wang, Haoran Li, Wu Wang, Huan Zheng, and Jianmin Tao. "Genome-Wide Identification of ATP-Binding Cassette (ABC) Transporter Provides Insight to Genes Related to Anthocyanin Transportation in New Teinturier Grape Germplasm ‘ZhongShan-HongYu’." Horticulturae 9, no. 5 (April 24, 2023): 532. http://dx.doi.org/10.3390/horticulturae9050532.
Повний текст джерелаBanerjee, Manidipa, Jeffrey A. Speir, Maggie H. Kwan, Rick Huang, Peyman P. Aryanpur, Brian Bothner, and John E. Johnson. "Structure and Function of a Genetically Engineered Mimic of a Nonenveloped Virus Entry Intermediate." Journal of Virology 84, no. 9 (February 17, 2010): 4737–46. http://dx.doi.org/10.1128/jvi.02670-09.
Повний текст джерелаKaneko, Takane, Kiyotaka Toshimori, and Hiroshi Iida. "Subcellular localization of MS4A13 isoform 2 in mouse spermatozoa." Reproduction 154, no. 6 (December 2017): 843–57. http://dx.doi.org/10.1530/rep-17-0477.
Повний текст джерелаStudzińska, Sylwia, Ewelina Zawadzka, Szymon Bocian, and Michał Szumski. "Synthesis and application of stationary phase for DNA-affinity chromatographic analysis of unmodified and antisense oligonucleotide." Analytical and Bioanalytical Chemistry 413, no. 20 (June 24, 2021): 5109–19. http://dx.doi.org/10.1007/s00216-021-03473-7.
Повний текст джерелаViard, Julia, Yann Loe-Mie, Rachel Daudin, Malik Khelfaoui, Christine Plancon, Anne Boland, Francisco Tejedor, et al. "Chr21 protein–protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer’s disease." Life Science Alliance 5, no. 12 (August 1, 2022): e202101205. http://dx.doi.org/10.26508/lsa.202101205.
Повний текст джерелаBahrami, Azadeh, Fatma Doğan, Deanpen Japrung, and Tim Albrecht. "Solid-state nanopores for biosensing with submolecular resolution." Biochemical Society Transactions 40, no. 4 (July 20, 2012): 624–28. http://dx.doi.org/10.1042/bst20120121.
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