Статті в журналах з теми "Gillespie simulations"
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Rajput, Nikhil Kumar. "Gillespie algorithm and diffusion approximation based on Monte Carlo simulation for innovation diffusion: A comparative study." Monte Carlo Methods and Applications 25, no. 3 (September 1, 2019): 209–15. http://dx.doi.org/10.1515/mcma-2019-2040.
Повний текст джерелаKierzek, A. M. "STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm." Bioinformatics 18, no. 3 (March 1, 2002): 470–81. http://dx.doi.org/10.1093/bioinformatics/18.3.470.
Повний текст джерелаAlfonso, L., G. B. Raga, and D. Baumgardner. "Monte Carlo simulations of two-component drop growth by stochastic coalescence." Atmospheric Chemistry and Physics Discussions 8, no. 2 (April 16, 2008): 7289–313. http://dx.doi.org/10.5194/acpd-8-7289-2008.
Повний текст джерелаMartinecz, Antal, Fabrizio Clarelli, Sören Abel, and Pia Abel zur Wiesch. "Reaction Kinetic Models of Antibiotic Heteroresistance." International Journal of Molecular Sciences 20, no. 16 (August 15, 2019): 3965. http://dx.doi.org/10.3390/ijms20163965.
Повний текст джерелаChen-Charpentier, Benito. "Stochastic Modeling of Plant Virus Propagation with Biological Control." Mathematics 9, no. 5 (February 24, 2021): 456. http://dx.doi.org/10.3390/math9050456.
Повний текст джерелаAlfonso, L., G. B. Raga, and D. Baumgardner. "Monte Carlo simulations of two-component drop growth by stochastic coalescence." Atmospheric Chemistry and Physics 9, no. 4 (February 18, 2009): 1241–51. http://dx.doi.org/10.5194/acp-9-1241-2009.
Повний текст джерелаChang, Qiang, Yang Lu, and Donghui Quan. "Accelerated Gillespie Algorithm for Gas–Grain Reaction Network Simulations Using Quasi-steady-state Assumption." Astrophysical Journal 851, no. 1 (December 13, 2017): 68. http://dx.doi.org/10.3847/1538-4357/aa99d9.
Повний текст джерелаJo, Yeji, Kyusik Mun, Yeonjoo Jeong, Joon Young Kwak, Jongkil Park, Suyoun Lee, Inho Kim, Jong-Keuk Park, Gyu-Weon Hwang, and Jaewook Kim. "A Poisson Process Generator Based on Multiple Thermal Noise Amplifiers for Parallel Stochastic Simulation of Biochemical Reactions." Electronics 11, no. 7 (March 25, 2022): 1039. http://dx.doi.org/10.3390/electronics11071039.
Повний текст джерелаIwuchukwu, Edward Uchechukwu, and Ardson dos Santos Junior Vianna. "Stochastic Modelling and Simulation of Free Radical Polymerization of Styrene in Microchannels using a Hybrid Gillespie Algorithm." Journal of Engineering and Exact Sciences 9, no. 1 (February 13, 2023): 15327–01. http://dx.doi.org/10.18540/jcecvl9iss1pp15327-01e.
Повний текст джерелаMatzko, Richard Oliver, Laurentiu Mierla, and Savas Konur. "Novel Ground-Up 3D Multicellular Simulators for Synthetic Biology CAD Integrating Stochastic Gillespie Simulations Benchmarked with Topologically Variable SBML Models." Genes 14, no. 1 (January 6, 2023): 154. http://dx.doi.org/10.3390/genes14010154.
Повний текст джерелаZAIKIN, A., A. K. MITRA, D. S. GOLDOBIN, and J. KURTHS. "INFLUENCE OF TRANSPORT RATES ON THE PROTEIN DEGRADATION BY PROTEASOMES." Biophysical Reviews and Letters 01, no. 04 (October 2006): 375–86. http://dx.doi.org/10.1142/s1793048006000355.
Повний текст джерелаAlbert, Jaroslav. "A Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-Networks." PLOS ONE 11, no. 3 (March 1, 2016): e0149909. http://dx.doi.org/10.1371/journal.pone.0149909.
Повний текст джерелаWU, PEI-JUNG, CHOU-CHING K. LIN, and MING-SHAUNG JU. "AXIAL-SYMMETRIC MODELING AND KINEMATIC ANALYSIS OF SPREADING OF SPARSELY CULTURED FIBROBLASTS." Journal of Mechanics in Medicine and Biology 13, no. 04 (July 7, 2013): 1350062. http://dx.doi.org/10.1142/s0219519413500620.
Повний текст джерелаThakur, Bhumika, and Hildegard Meyer-Ortmanns. "Controlling the Mean Time to Extinction in Populations of Bacteria." Entropy 25, no. 5 (May 5, 2023): 755. http://dx.doi.org/10.3390/e25050755.
Повний текст джерелаSlatkin, Montgomery. "Balancing Selection at Closely Linked, Overdominant Loci in a Finite Population." Genetics 154, no. 3 (March 1, 2000): 1367–78. http://dx.doi.org/10.1093/genetics/154.3.1367.
Повний текст джерелаMarwa, Yohana Maiga, Isambi Sailon Mbalawata, and Samuel Mwalili. "Continuous Time Markov Chain Model for Cholera Epidemic Transmission Dynamics." International Journal of Statistics and Probability 8, no. 3 (April 18, 2019): 32. http://dx.doi.org/10.5539/ijsp.v8n3p32.
Повний текст джерелаWen, Chengyuan, Roy Odle, and Shengfeng Cheng. "Molecular Weight Distribution of Branched Polymers: Comparison between Monte Carlo Simulation and Flory-Stockmayer Theory." Polymers 15, no. 7 (April 4, 2023): 1791. http://dx.doi.org/10.3390/polym15071791.
Повний текст джерелаYates, Christian A., Matthew J. Ford, and Richard L. Mort. "A Multi-stage Representation of Cell Proliferation as a Markov Process." Bulletin of Mathematical Biology 79, no. 12 (October 13, 2017): 2905–28. http://dx.doi.org/10.1007/s11538-017-0356-4.
Повний текст джерелаSsematimba, Amos, Sasidhar Malladi, Peter Bonney, Kaitlyn Charles, Timothy Boyer, Timothy Goldsmith, Carol Cardona, Cesar Corzo, and Marie Culhane. "African swine fever detection and transmission estimates using homogeneous versus heterogeneous model formulation in stochastic simulations within pig premises." Open Veterinary Journal 12, no. 6 (2022): 787. http://dx.doi.org/10.5455/ovj.2022.v12.i6.2.
Повний текст джерелаGIL, Jarosław, and Andrzej POLAŃSKI. "APPLICATION OF GILLESPIE ALGORITHM FOR SIMULATING EVOLUTION OF FITNESS OF MICROBIAL POPULATION." Applied Computer Science 18, no. 4 (October 4, 2022): 5–15. http://dx.doi.org/10.35784/acs-2022-25.
Повний текст джерелаSmyrnova-Trybulska, Eugenia. "EVOLUTION OF MEDIA COMPETENCES." OPEN EDUCATIONAL E-ENVIRONMENT OF MODERN UNIVERSITY, SPECIAL EDITION (2019): 77–92. http://dx.doi.org/10.28925/2414-0325.2019s7.
Повний текст джерелаXing, Fei, Yi Ping Yao, Zhi Wen Jiang, and Bing Wang. "Fine-Grained Parallel and Distributed Spatial Stochastic Simulation of Biological Reactions." Advanced Materials Research 345 (September 2011): 104–12. http://dx.doi.org/10.4028/www.scientific.net/amr.345.104.
Повний текст джерелаPietras, Bastian, Valentin Schmutz, and Tilo Schwalger. "Mesoscopic description of hippocampal replay and metastability in spiking neural networks with short-term plasticity." PLOS Computational Biology 18, no. 12 (December 22, 2022): e1010809. http://dx.doi.org/10.1371/journal.pcbi.1010809.
Повний текст джерелаDinh, Khanh, Roman Jaksik, Marek Kimmel, and Seth J. Corey. "Predicting Minimal Residual Disease in Acute Myeloid Leukemia through Stochastic Modeling of Clonality." Blood 134, Supplement_1 (November 13, 2019): 1448. http://dx.doi.org/10.1182/blood-2019-127457.
Повний текст джерелаKlann, Michael, Arnab Ganguly, and Heinz Koeppl. "Hybrid spatial Gillespie and particle tracking simulation." Bioinformatics 28, no. 18 (September 3, 2012): i549—i555. http://dx.doi.org/10.1093/bioinformatics/bts384.
Повний текст джерелаChen, Xuyou, Ruomei Wang, Shujin Lin, Fei Wang, and Xiaonan Luo. "Thrombus Clotting Simulation Method Based on the Gillespie Method." Journal of Computer-Aided Design & Computer Graphics 31, no. 8 (2019): 1301. http://dx.doi.org/10.3724/sp.j.1089.2019.17570.
Повний текст джерелаANDRECUT, M., and S. A. KAUFFMAN. "MEAN FIELD MODEL OF THE GENETIC TOGGLE SWITCH." International Journal of Modern Physics B 20, no. 29 (November 20, 2006): 4947–63. http://dx.doi.org/10.1142/s021797920603576x.
Повний текст джерелаKim, Young Jin, Jae Jun Lee, and Julian Lee. "Gillespie Simulation of Rare Events in a Genetic Regulatory Network." Journal of the Korean Physical Society 74, no. 9 (May 2019): 907–11. http://dx.doi.org/10.3938/jkps.74.907.
Повний текст джерелаAltıntan, Derya, Vi̇lda Purutçuoğlu, and Ömür Uğur. "Impulsive Expressions in Stochastic Simulation Algorithms." International Journal of Computational Methods 15, no. 01 (September 27, 2017): 1750075. http://dx.doi.org/10.1142/s021987621750075x.
Повний текст джерелаTangherloni, Andrea, Marco S. Nobile, Paolo Cazzaniga, Daniela Besozzi, and Giancarlo Mauri. "Gillespie’s Stochastic Simulation Algorithm on MIC coprocessors." Journal of Supercomputing 73, no. 2 (June 21, 2016): 676–86. http://dx.doi.org/10.1007/s11227-016-1778-8.
Повний текст джерелаVestergaard, Christian L., and Mathieu Génois. "Temporal Gillespie Algorithm: Fast Simulation of Contagion Processes on Time-Varying Networks." PLOS Computational Biology 11, no. 10 (October 30, 2015): e1004579. http://dx.doi.org/10.1371/journal.pcbi.1004579.
Повний текст джерелаFerlic, Jeremy, Jiantao Shi, Thomas O. McDonald, and Franziska Michor. "DIFFpop: a stochastic computational approach to simulate differentiation hierarchies with single cell barcoding." Bioinformatics 35, no. 19 (February 28, 2019): 3849–51. http://dx.doi.org/10.1093/bioinformatics/btz074.
Повний текст джерелаAndrecut, M., and S. A. Kauffman. "Noise in Genetic Toggle Switch Models." Journal of Integrative Bioinformatics 3, no. 1 (June 1, 2006): 63–77. http://dx.doi.org/10.1515/jib-2006-23.
Повний текст джерелаLu, T., D. Volfson, L. Tsimring, and J. Hasty. "Cellular growth and division in the Gillespie algorithm." Systems Biology 1, no. 1 (June 1, 2004): 121–28. http://dx.doi.org/10.1049/sb:20045016.
Повний текст джерелаSuderman, Ryan, Eshan D. Mitra, Yen Ting Lin, Keesha E. Erickson, Song Feng, and William S. Hlavacek. "Generalizing Gillespie’s Direct Method to Enable Network-Free Simulations." Bulletin of Mathematical Biology 81, no. 8 (March 28, 2018): 2822–48. http://dx.doi.org/10.1007/s11538-018-0418-2.
Повний текст джерелаXie, Kewei, and Qian Wang. "Intracellular transport by motor proteins with the same directionality." JUSTC 53, no. 3 (2023): 0307. http://dx.doi.org/10.52396/justc-2022-0140.
Повний текст джерелаVestergaard, Christian L., and Mathieu Génois. "Correction: Temporal Gillespie algorithm: Fast simulation of contagion processes on time-varying networks." PLOS Computational Biology 15, no. 7 (July 3, 2019): e1007190. http://dx.doi.org/10.1371/journal.pcbi.1007190.
Повний текст джерелаClote, Peter, and Amir H. Bayegan. "RNA folding kinetics using Monte Carlo and Gillespie algorithms." Journal of Mathematical Biology 76, no. 5 (August 5, 2017): 1195–227. http://dx.doi.org/10.1007/s00285-017-1169-7.
Повний текст джерелаFertig, Dávid, Eszter Mádai, Mónika Valiskó, and Dezső Boda. "Simulating Ion Transport with the NP+LEMC Method. Applications to Ion Channels and Nanopores." Hungarian Journal of Industry and Chemistry 45, no. 1 (October 1, 2017): 73–84. http://dx.doi.org/10.1515/hjic-2017-0011.
Повний текст джерелаDe Maio, Nicola, William Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, and Nick Goldman. "phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets." PLOS Computational Biology 18, no. 4 (April 29, 2022): e1010056. http://dx.doi.org/10.1371/journal.pcbi.1010056.
Повний текст джерелаKomarov, Ivan, and Roshan M. D'Souza. "Accelerating the Gillespie Exact Stochastic Simulation Algorithm Using Hybrid Parallel Execution on Graphics Processing Units." PLoS ONE 7, no. 11 (November 9, 2012): e46693. http://dx.doi.org/10.1371/journal.pone.0046693.
Повний текст джерелаCota, Wesley, and Silvio C. Ferreira. "Optimized Gillespie algorithms for the simulation of Markovian epidemic processes on large and heterogeneous networks." Computer Physics Communications 219 (October 2017): 303–12. http://dx.doi.org/10.1016/j.cpc.2017.06.007.
Повний текст джерелаAbel, John H., Brian Drawert, Andreas Hellander, and Linda R. Petzold. "GillesPy: A Python Package for Stochastic Model Building and Simulation." IEEE Life Sciences Letters 2, no. 3 (September 2016): 35–38. http://dx.doi.org/10.1109/lls.2017.2652448.
Повний текст джерелаMuniyandi. "Experimenting the Simulation Strategy of Membrane Computing with Gillespie Algorithm by Using Two Biological Case Studies." Journal of Computer Science 6, no. 5 (May 1, 2010): 525–35. http://dx.doi.org/10.3844/jcssp.2010.525.535.
Повний текст джерелаAshwin, Peter, B. S. V. Patnaik, and C. David Wright. "Fast simulation of phase-change processes in chalcogenide alloys using a Gillespie-type cellular automata approach." Journal of Applied Physics 104, no. 8 (October 15, 2008): 084901. http://dx.doi.org/10.1063/1.2978334.
Повний текст джерелаBittig, Arne T., and Adelinde M. Uhrmacher. "ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology." IEEE/ACM Transactions on Computational Biology and Bioinformatics 14, no. 6 (November 1, 2017): 1339–49. http://dx.doi.org/10.1109/tcbb.2016.2598162.
Повний текст джерелаAmar, Patrick. "Pandæsim: An Epidemic Spreading Stochastic Simulator." Biology 9, no. 9 (September 18, 2020): 299. http://dx.doi.org/10.3390/biology9090299.
Повний текст джерелаSheldon, Matthew, and Giuliano Casale. "TauSSA." ACM SIGMETRICS Performance Evaluation Review 49, no. 4 (June 2, 2022): 70–75. http://dx.doi.org/10.1145/3543146.3543162.
Повний текст джерелаCao, Yang, Petzold Linda, and Effrosyni Seitaridou. "Stochastic Simulation of Biochemical Systems: In Memory of Dan T. Gillespie’s contributions." Bulletin of Mathematical Biology 81, no. 8 (July 1, 2019): 2819–21. http://dx.doi.org/10.1007/s11538-019-00633-w.
Повний текст джерелаMura, Ivan. "On modeling approaches for the predictive simulation of living systms dymamics." Revista Ontare 1, no. 2 (September 17, 2015): 101. http://dx.doi.org/10.21158/23823399.v1.n2.2013.1225.
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