Статті в журналах з теми "Genome supercoiling"
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El Houdaigui, Bilal, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon, and Sam Meyer. "Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling." Nucleic Acids Research 47, no. 11 (April 24, 2019): 5648–57. http://dx.doi.org/10.1093/nar/gkz300.
Повний текст джерелаValenti, Anna, Giuseppe Perugino, Mosè Rossi, and Maria Ciaramella. "Positive supercoiling in thermophiles and mesophiles: of the good and evil." Biochemical Society Transactions 39, no. 1 (January 19, 2011): 58–63. http://dx.doi.org/10.1042/bst0390058.
Повний текст джерелаGeng, Yuncong, Christopher Herrick Bohrer, Nicolás Yehya, Hunter Hendrix, Lior Shachaf, Jian Liu, Jie Xiao, and Elijah Roberts. "A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation." PLOS Computational Biology 18, no. 9 (September 19, 2022): e1009788. http://dx.doi.org/10.1371/journal.pcbi.1009788.
Повний текст джерелаAhmed, Syed Moiz, and Peter Dröge. "Chromatin Architectural Factors as Safeguards against Excessive Supercoiling during DNA Replication." International Journal of Molecular Sciences 21, no. 12 (June 24, 2020): 4504. http://dx.doi.org/10.3390/ijms21124504.
Повний текст джерелаSalvador, Maria L., Uwe Klein, and Lawrence Bogorad. "Endogenous Fluctuations of DNA Topology in the Chloroplast of Chlamydomonas reinhardtii." Molecular and Cellular Biology 18, no. 12 (December 1, 1998): 7235–42. http://dx.doi.org/10.1128/mcb.18.12.7235.
Повний текст джерелаNeguembor, Maria Victoria, Laura Martin, Álvaro Castells-García, Pablo Aurelio Gómez-García, Chiara Vicario, Davide Carnevali, Jumana AlHaj Abed, et al. "Transcription-mediated supercoiling regulates genome folding and loop formation." Molecular Cell 81, no. 15 (August 2021): 3065–81. http://dx.doi.org/10.1016/j.molcel.2021.06.009.
Повний текст джерелаGilbert, Nick. "Organisation and Function of DNA Supercoiling in the Human Genome." Biophysical Journal 114, no. 3 (February 2018): 13a. http://dx.doi.org/10.1016/j.bpj.2017.11.113.
Повний текст джерелаAlcorlo, Martín, Margarita Salas, and José M. Hermoso. "In Vivo DNA Binding of Bacteriophage GA-1 Protein p6." Journal of Bacteriology 189, no. 22 (September 14, 2007): 8024–33. http://dx.doi.org/10.1128/jb.01047-07.
Повний текст джерелаAdkins, Melissa W., and Jessica K. Tyler. "The Histone Chaperone Asf1p Mediates Global Chromatin Disassemblyin Vivo." Journal of Biological Chemistry 279, no. 50 (September 26, 2004): 52069–74. http://dx.doi.org/10.1074/jbc.m406113200.
Повний текст джерелаBlot, Nicolas, Ramesh Mavathur, Marcel Geertz, Andrew Travers, and Georgi Muskhelishvili. "Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome." EMBO reports 7, no. 7 (June 16, 2006): 710–15. http://dx.doi.org/10.1038/sj.embor.7400729.
Повний текст джерелаIvanov, Ivan E., Addison V. Wright, Joshua C. Cofsky, Kevin D. Palacio Aris, Jennifer A. Doudna, and Zev Bryant. "Cas9 interrogates DNA in discrete steps modulated by mismatches and supercoiling." Proceedings of the National Academy of Sciences 117, no. 11 (March 2, 2020): 5853–60. http://dx.doi.org/10.1073/pnas.1913445117.
Повний текст джерелаEl Houdaigui, Bilal, and Sam Meyer. "TwisTranscripT: stochastic simulation of the transcription-supercoiling coupling." Bioinformatics 36, no. 12 (March 31, 2020): 3899–901. http://dx.doi.org/10.1093/bioinformatics/btaa221.
Повний текст джерелаLaghi, Luigi, Ann E. Randolph, Alberto Malesci, and C. Richard Boland. "Constraints imposed by supercoiling on in vitro amplification of polyomavirus DNA." Journal of General Virology 85, no. 11 (November 1, 2004): 3383–88. http://dx.doi.org/10.1099/vir.0.80039-0.
Повний текст джерелаMarinov, Georgi K., Alexandro E. Trevino, Tingting Xiang, Anshul Kundaje, Arthur R. Grossman, and William J. Greenleaf. "Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum." Nature Genetics 53, no. 5 (April 29, 2021): 613–17. http://dx.doi.org/10.1038/s41588-021-00848-5.
Повний текст джерелаKantidze, Omar L., and Sergey V. Razin. "Weak interactions in higher-order chromatin organization." Nucleic Acids Research 48, no. 9 (April 20, 2020): 4614–26. http://dx.doi.org/10.1093/nar/gkaa261.
Повний текст джерелаSt Germain, Commodore, Hongchang Zhao, and Jacqueline H. Barlow. "Transcription-Replication Collisions—A Series of Unfortunate Events." Biomolecules 11, no. 8 (August 21, 2021): 1249. http://dx.doi.org/10.3390/biom11081249.
Повний текст джерелаFerrándiz, María-José, Pablo Hernández, and Adela G. de la Campa. "Genome-wide proximity between RNA polymerase and DNA topoisomerase I supports transcription in Streptococcus pneumoniae." PLOS Genetics 17, no. 4 (April 30, 2021): e1009542. http://dx.doi.org/10.1371/journal.pgen.1009542.
Повний текст джерелаRoss, Margery A., та Peter Setlow. "The Bacillus subtilis HBsu Protein Modifies the Effects of α/β-Type, Small Acid-Soluble Spore Proteins on DNA". Journal of Bacteriology 182, № 7 (1 квітня 2000): 1942–48. http://dx.doi.org/10.1128/jb.182.7.1942-1948.2000.
Повний текст джерелаOram, Mark, and Martin L. Pato. "Mu-Like Prophage Strong Gyrase Site Sequences: Analysis of Properties Required for Promoting Efficient Mu DNA Replication." Journal of Bacteriology 186, no. 14 (July 15, 2004): 4575–84. http://dx.doi.org/10.1128/jb.186.14.4575-4584.2004.
Повний текст джерелаAubry, Alexandra, Xiao-Su Pan, L. Mark Fisher, Vincent Jarlier, and Emmanuelle Cambau. "Mycobacterium tuberculosis DNA Gyrase: Interaction with Quinolones and Correlation with Antimycobacterial Drug Activity." Antimicrobial Agents and Chemotherapy 48, no. 4 (April 2004): 1281–88. http://dx.doi.org/10.1128/aac.48.4.1281-1288.2004.
Повний текст джерелаCao, Nan, Kemin Tan, Xiaobing Zuo, Thirunavukkarasu Annamalai, and Yuk-Ching Tse-Dinh. "Mechanistic insights from structure of Mycobacterium smegmatis topoisomerase I with ssDNA bound to both N- and C-terminal domains." Nucleic Acids Research 48, no. 8 (March 30, 2020): 4448–62. http://dx.doi.org/10.1093/nar/gkaa201.
Повний текст джерелаBhandari, Nirajan, Christine Rourke, Thomas Wilmoth, Alekya Bheemreddy, David Schulman, Dina Collins, Harold E. Smith, Andy Golden, and Aimee Jaramillo-Lambert. "Identification of Suppressors of top-2 Embryonic Lethality in Caenorhabditis elegans." G3: Genes|Genomes|Genetics 10, no. 4 (February 21, 2020): 1183–91. http://dx.doi.org/10.1534/g3.119.400927.
Повний текст джерелаvan Loenhout, M. T. J., M. V. de Grunt, and C. Dekker. "Dynamics of DNA Supercoils." Science 338, no. 6103 (September 13, 2012): 94–97. http://dx.doi.org/10.1126/science.1225810.
Повний текст джерелаDorman, Charles J. "Regulation of transcription by DNA supercoiling in Mycoplasma genitalium: global control in the smallest known self-replicating genome." Molecular Microbiology 81, no. 2 (June 16, 2011): 302–4. http://dx.doi.org/10.1111/j.1365-2958.2011.07718.x.
Повний текст джерелаGonzalez-Huici, V. "Genome wide, supercoiling-dependent in vivo binding of a viral protein involved in DNA replication and transcriptional control." Nucleic Acids Research 32, no. 8 (April 28, 2004): 2306–14. http://dx.doi.org/10.1093/nar/gkh565.
Повний текст джерелаMenger, Katja E., Alejandro Rodríguez-Luis, James Chapman, and Thomas J. Nicholls. "Controlling the topology of mammalian mitochondrial DNA." Open Biology 11, no. 9 (September 2021): 210168. http://dx.doi.org/10.1098/rsob.210168.
Повний текст джерелаHead, Nathan E., and Hongwei Yu. "Cross-Sectional Analysis of Clinical and Environmental Isolates of Pseudomonas aeruginosa: Biofilm Formation, Virulence, and Genome Diversity." Infection and Immunity 72, no. 1 (January 2004): 133–44. http://dx.doi.org/10.1128/iai.72.1.133-144.2004.
Повний текст джерелаIshii, Satoshi, Tetsuya Murakami, and Kazuo Shishido. "A pSC101-parsequence-mediated study on the intracellular state of supercoiling of the pBR322 genome inEscherichia coliDNA topoisomerase I deletion mutant." FEMS Microbiology Letters 93, no. 2 (June 1992): 115–20. http://dx.doi.org/10.1111/j.1574-6968.1992.tb05076.x.
Повний текст джерелаdel Val, Elsa, William Nasser, Hafid Abaibou, and Sylvie Reverchon. "RecA and DNA recombination: a review of molecular mechanisms." Biochemical Society Transactions 47, no. 5 (October 18, 2019): 1511–31. http://dx.doi.org/10.1042/bst20190558.
Повний текст джерелаAldag, Pierre, Fabian Welzel, Leonhard Jakob, Andreas Schmidbauer, Marius Rutkauskas, Fergus Fettes, Dina Grohmann, and Ralf Seidel. "Probing the stability of the SpCas9–DNA complex after cleavage." Nucleic Acids Research 49, no. 21 (November 18, 2021): 12411–21. http://dx.doi.org/10.1093/nar/gkab1072.
Повний текст джерелаNam, Gi-Moon, and Gaurav Arya. "Torsional behavior of chromatin is modulated by rotational phasing of nucleosomes." Nucleic Acids Research 42, no. 15 (August 6, 2014): 9691–99. http://dx.doi.org/10.1093/nar/gku694.
Повний текст джерелаEriksson, Peter R., Geetu Mendiratta, Neil B. McLaughlin, Tyra G. Wolfsberg, Leonardo Mariño-Ramírez, Tiffany A. Pompa, Mohendra Jainerin, David Landsman, Chang-Hui Shen, and David J. Clark. "Global Regulation by the Yeast Spt10 Protein Is Mediated through Chromatin Structure and the Histone Upstream Activating Sequence Elements." Molecular and Cellular Biology 25, no. 20 (October 15, 2005): 9127–37. http://dx.doi.org/10.1128/mcb.25.20.9127-9137.2005.
Повний текст джерелаKrassovsky, Kristina, Rajarshi P. Ghosh, and Barbara J. Meyer. "Genome-wide profiling reveals functional interplay of DNA sequence composition, transcriptional activity, and nucleosome positioning in driving DNA supercoiling and helix destabilization in C. elegans." Genome Research 31, no. 7 (June 24, 2021): 1187–202. http://dx.doi.org/10.1101/gr.270082.120.
Повний текст джерелаBarsoum, J., and P. Berg. "Simian virus 40 minichromosomes contain torsionally strained DNA molecules." Molecular and Cellular Biology 5, no. 11 (November 1985): 3048–57. http://dx.doi.org/10.1128/mcb.5.11.3048-3057.1985.
Повний текст джерелаBarsoum, J., and P. Berg. "Simian virus 40 minichromosomes contain torsionally strained DNA molecules." Molecular and Cellular Biology 5, no. 11 (November 1985): 3048–57. http://dx.doi.org/10.1128/mcb.5.11.3048.
Повний текст джерелаBrochu, Julien, Émilie Vlachos-Breton, Dina Irsenco, and Marc Drolet. "Characterization of a pathway of genomic instability induced by R-loops and its regulation by topoisomerases in E. coli." PLOS Genetics 19, no. 5 (May 4, 2023): e1010754. http://dx.doi.org/10.1371/journal.pgen.1010754.
Повний текст джерелаCorless, Samuel, and Nick Gilbert. "Investigating DNA supercoiling in eukaryotic genomes." Briefings in Functional Genomics 16, no. 6 (April 24, 2017): 379–89. http://dx.doi.org/10.1093/bfgp/elx007.
Повний текст джерелаThomas, Shelia, Francine Rezzoug, and Donald Max Miller. "A Family Of G-Rich Genomic Sequences Iinteract Specifically With The Pu27 Silencer Element Of The c-Myc Promoter." Blood 122, no. 21 (November 15, 2013): 1264. http://dx.doi.org/10.1182/blood.v122.21.1264.1264.
Повний текст джерелаHerzel, Hanspeter, Olaf Weiss, and Edward N. Trifonov. "Sequence Periodicity in Complete Genomes of Archaea Suggests Positive Supercoiling." Journal of Biomolecular Structure and Dynamics 16, no. 2 (October 1998): 341–45. http://dx.doi.org/10.1080/07391102.1998.10508251.
Повний текст джерелаYan, Yan, Wenxuan Xu, Sandip Kumar, Alexander Zhang, Fenfei Leng, David Dunlap, and Laura Finzi. "Negative DNA supercoiling makes protein-mediated looping deterministic and ergodic within the bacterial doubling time." Nucleic Acids Research 49, no. 20 (November 1, 2021): 11550–59. http://dx.doi.org/10.1093/nar/gkab946.
Повний текст джерелаChampion, Keith, and N. Patrick Higgins. "Growth Rate Toxicity Phenotypes and Homeostatic Supercoil Control Differentiate Escherichia coli from Salmonella enterica Serovar Typhimurium." Journal of Bacteriology 189, no. 16 (March 30, 2007): 5839–49. http://dx.doi.org/10.1128/jb.00083-07.
Повний текст джерелаJolivet-Gougeon, Anne, Sandrine David-Jobert, Zohreh Tamanai-Shacoori, Christian M�nard, and Michel Cormier. "Osmotic Stress-Induced Genetic Rearrangements inEscherichia coli H10407 Detected by Randomly Amplified Polymorphic DNA Analysis." Applied and Environmental Microbiology 66, no. 12 (December 1, 2000): 5484–87. http://dx.doi.org/10.1128/aem.66.12.5484-5487.2000.
Повний текст джерелаKravatskaya, G. I., Y. V. Kravatsky, V. R. Chechetkin, and V. G. Tumanyan. "Coexistence of different base periodicities in prokaryotic genomes as related to DNA curvature, supercoiling, and transcription." Genomics 98, no. 3 (September 2011): 223–31. http://dx.doi.org/10.1016/j.ygeno.2011.06.006.
Повний текст джерелаBowater, Richard P., Natália Bohálová, and Václav Brázda. "Interaction of Proteins with Inverted Repeats and Cruciform Structures in Nucleic Acids." International Journal of Molecular Sciences 23, no. 11 (May 31, 2022): 6171. http://dx.doi.org/10.3390/ijms23116171.
Повний текст джерелаMrázek, Jan. "Comparative Analysis of Sequence Periodicity among Prokaryotic Genomes Points to Differences in Nucleoid Structure and a Relationship to Gene Expression." Journal of Bacteriology 192, no. 14 (May 21, 2010): 3763–72. http://dx.doi.org/10.1128/jb.00149-10.
Повний текст джерелаRastelli, Luca, Karen Robinson, Yanbo Xu, and Sadhan Majumder. "Reconstitution of Enhancer Function in Paternal Pronuclei of One-Cell Mouse Embryos." Molecular and Cellular Biology 21, no. 16 (August 15, 2001): 5531–40. http://dx.doi.org/10.1128/mcb.21.16.5531-5540.2001.
Повний текст джерелаGrohens, Théotime, Sam Meyer, and Guillaume Beslon. "A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling." Artificial Life, August 5, 2022, 1–18. http://dx.doi.org/10.1162/artl_a_00373.
Повний текст джерелаVisser, Bryan J., Sonum Sharma, Po J. Chen, Anna B. McMullin, Maia L. Bates, and David Bates. "Psoralen mapping reveals a bacterial genome supercoiling landscape dominated by transcription." Nucleic Acids Research, April 14, 2022. http://dx.doi.org/10.1093/nar/gkac244.
Повний текст джерелаGuo, Monica S., Ryo Kawamura, Megan L. Littlehale, John F. Marko, and Michael T. Laub. "High-resolution, genome-wide mapping of positive supercoiling in chromosomes." eLife 10 (July 19, 2021). http://dx.doi.org/10.7554/elife.67236.
Повний текст джерелаFujita, Hironobu, Ayane Osaku, Yuto Sakane, Koki Yoshida, Kayoko Yamada, Seia Nara, Takahito Mukai, and Masayuki Su’etsugu. "Enzymatic Supercoiling of Bacterial Chromosomes Facilitates Genome Manipulation." ACS Synthetic Biology, August 23, 2022. http://dx.doi.org/10.1021/acssynbio.2c00353.
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