Статті в журналах з теми "Genome spatial organization"
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Parada, L. "Spatial genome organization." Experimental Cell Research 296, no. 1 (May 15, 2004): 64–70. http://dx.doi.org/10.1016/j.yexcr.2004.03.013.
Rajarajan, Prashanth, Sergio Espeso Gil, Kristen J. Brennand, and Schahram Akbarian. "Spatial genome organization and cognition." Nature Reviews Neuroscience 17, no. 11 (October 6, 2016): 681–91. http://dx.doi.org/10.1038/nrn.2016.124.
Brickner, Jason. "Genetic and epigenetic control of the spatial organization of the genome." Molecular Biology of the Cell 28, no. 3 (February 2017): 364–69. http://dx.doi.org/10.1091/mbc.e16-03-0149.
Finn, Elizabeth H., and Tom Misteli. "Molecular basis and biological function of variability in spatial genome organization." Science 365, no. 6457 (September 5, 2019): eaaw9498. http://dx.doi.org/10.1126/science.aaw9498.
Xie, Ting, Liang-Yu Fu, Qing-Yong Yang, Heng Xiong, Hongrui Xu, Bin-Guang Ma, and Hong-Yu Zhang. "Spatial features for Escherichia coli genome organization." BMC Genomics 16, no. 1 (2015): 37. http://dx.doi.org/10.1186/s12864-015-1258-1.
Kim, S. H., P. G. McQueen, M. K. Lichtman, E. M. Shevach, L. A. Parada, and T. Misteli. "Spatial genome organization during T-cell differentiation." Cytogenetic and Genome Research 105, no. 2-4 (2004): 292–301. http://dx.doi.org/10.1159/000078201.
Ramani, Vijay, Jay Shendure, and Zhijun Duan. "Understanding Spatial Genome Organization: Methods and Insights." Genomics, Proteomics & Bioinformatics 14, no. 1 (February 2016): 7–20. http://dx.doi.org/10.1016/j.gpb.2016.01.002.
Bickmore, Wendy A. "The Spatial Organization of the Human Genome." Annual Review of Genomics and Human Genetics 14, no. 1 (August 31, 2013): 67–84. http://dx.doi.org/10.1146/annurev-genom-091212-153515.
Purugganan, Michael D. "Scale-invariant spatial patterns in genome organization." Physics Letters A 175, no. 3-4 (April 1993): 252–56. http://dx.doi.org/10.1016/0375-9601(93)90836-o.
Llorens-Giralt, Palmira, Carlos Camilleri-Robles, Montserrat Corominas, and Paula Climent-Cantó. "Chromatin Organization and Function in Drosophila." Cells 10, no. 9 (September 8, 2021): 2362. http://dx.doi.org/10.3390/cells10092362.
Finn, Elizabeth H., Gianluca Pegoraro, Hugo B. Brandão, Anne-Laure Valton, Marlies E. Oomen, Job Dekker, Leonid Mirny, and Tom Misteli. "Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization." Cell 176, no. 6 (March 2019): 1502–15. http://dx.doi.org/10.1016/j.cell.2019.01.020.
Pederson, Thoru. "The spatial organization of the genome in mammalian cells." Current Opinion in Genetics & Development 14, no. 2 (April 2004): 203–9. http://dx.doi.org/10.1016/j.gde.2004.02.008.
Meaburn, Karen J., Tom Misteli, and Evi Soutoglou. "Spatial genome organization in the formation of chromosomal translocations." Seminars in Cancer Biology 17, no. 1 (February 2007): 80–90. http://dx.doi.org/10.1016/j.semcancer.2006.10.008.
Alber, Frank. "101 Exploring the 3D spatial organization of the genome." Journal of Biomolecular Structure and Dynamics 31, sup1 (January 2013): 64. http://dx.doi.org/10.1080/07391102.2013.786343.
Joffe, Boris, Heinrich Leonhardt, and Irina Solovei. "Differentiation and large scale spatial organization of the genome." Current Opinion in Genetics & Development 20, no. 5 (October 2010): 562–69. http://dx.doi.org/10.1016/j.gde.2010.05.009.
Tjong, Harianto, Wenyuan Li, Reza Kalhor, Chao Dai, Shengli Hao, Ke Gong, Yonggang Zhou, et al. "Population-based 3D genome structure analysis reveals driving forces in spatial genome organization." Proceedings of the National Academy of Sciences 113, no. 12 (March 7, 2016): E1663—E1672. http://dx.doi.org/10.1073/pnas.1512577113.
Ohno, Masae, David G. Priest, and Yuichi Taniguchi. "Nucleosome-level 3D organization of the genome." Biochemical Society Transactions 46, no. 3 (April 6, 2018): 491–501. http://dx.doi.org/10.1042/bst20170388.
Junaid, Alim, Baljinder Singh, and Sabhyata Bhatia. "Evolutionary insights into 3D genome organization and epigenetic landscape ofVigna mungo." Life Science Alliance 7, no. 1 (November 3, 2023): e202302074. http://dx.doi.org/10.26508/lsa.202302074.
Stanic, Mia, and Karim Mekhail. "Integration of DNA damage responses with dynamic spatial genome organization." Trends in Genetics 38, no. 3 (March 2022): 290–304. http://dx.doi.org/10.1016/j.tig.2021.08.016.
Fujita, Yuki, and Toshihide Yamashita. "Spatial organization of genome architecture in neuronal development and disease." Neurochemistry International 119 (October 2018): 49–56. http://dx.doi.org/10.1016/j.neuint.2017.06.014.
Nicodemi, Mario, and Antonella Prisco. "Thermodynamic Pathways to Genome Spatial Organization in the Cell Nucleus." Biophysical Journal 96, no. 6 (March 2009): 2168–77. http://dx.doi.org/10.1016/j.bpj.2008.12.3919.
O'Sullivan, J. M., D. M. Sontam, R. Grierson, and B. Jones. "Repeated elements coordinate the spatial organization of the yeast genome." Yeast 26, no. 2 (February 2006): 125–38. http://dx.doi.org/10.1002/yea.1657.
Chen, Yu, Yang Zhang, Yuchuan Wang, Liguo Zhang, Eva K. Brinkman, Stephen A. Adam, Robert Goldman, Bas van Steensel, Jian Ma, and Andrew S. Belmont. "Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler." Journal of Cell Biology 217, no. 11 (August 28, 2018): 4025–48. http://dx.doi.org/10.1083/jcb.201807108.
Jowhar, Ziad, Sigal Shachar, Prabhakar R. Gudla, Darawalee Wangsa, Erin Torres, Jill L. Russ, Gianluca Pegoraro, Thomas Ried, Armin Raznahan, and Tom Misteli. "Effects of human sex chromosome dosage on spatial chromosome organization." Molecular Biology of the Cell 29, no. 20 (October 2018): 2458–69. http://dx.doi.org/10.1091/mbc.e18-06-0359.
Zhou, Tianming, Ruochi Zhang, and Jian Ma. "The 3D Genome Structure of Single Cells." Annual Review of Biomedical Data Science 4, no. 1 (July 20, 2021): 21–41. http://dx.doi.org/10.1146/annurev-biodatasci-020121-084709.
Federico, Concetta, Francesca Bruno, Denise Ragusa, Craig S. Clements, Desiree Brancato, Marianne P. Henry, Joanna M. Bridger, Sabrina Tosi, and Salvatore Saccone. "Chromosomal Rearrangements and Altered Nuclear Organization: Recent Mechanistic Models in Cancer." Cancers 13, no. 22 (November 22, 2021): 5860. http://dx.doi.org/10.3390/cancers13225860.
Szałaj, Przemysław, Zhonghui Tang, Paul Michalski, Michal J. Pietal, Oscar J. Luo, Michał Sadowski, Xingwang Li, Kamen Radew, Yijun Ruan, and Dariusz Plewczynski. "An integrated 3-Dimensional Genome Modeling Engine for data-driven simulation of spatial genome organization." Genome Research 26, no. 12 (October 27, 2016): 1697–709. http://dx.doi.org/10.1101/gr.205062.116.
Lenz, Todd, and Karine G. Le Roch. "Three-Dimensional Genome Organization and Virulence in Apicomplexan Parasites." Epigenetics Insights 12 (January 2019): 251686571987943. http://dx.doi.org/10.1177/2516865719879436.
Huang, Shao-Kuei, Peter H. Whitney, Sayantan Dutta, Stanislav Y. Shvartsman, and Christine A. Rushlow. "Spatial organization of transcribing loci during early genome activation in Drosophila." Current Biology 31, no. 22 (November 2021): 5102–10. http://dx.doi.org/10.1016/j.cub.2021.09.027.
Chen, Changya, Wenbao Yu, Joanna Tober, Peng Gao, Bing He, Kiwon Lee, Tuan Trieu, Gerd A. Blobel, Nancy A. Speck, and Kai Tan. "Spatial Genome Re-organization between Fetal and Adult Hematopoietic Stem Cells." Cell Reports 29, no. 12 (December 2019): 4200–4211. http://dx.doi.org/10.1016/j.celrep.2019.11.065.
Randise-Hinchliff, Carlo, and Jason H. Brickner. "Transcription factors dynamically control the spatial organization of the yeast genome." Nucleus 7, no. 4 (July 3, 2016): 369–74. http://dx.doi.org/10.1080/19491034.2016.1212797.
Gavrilov, A. A., and S. V. Razin. "Compartmentalization of the cell nucleus and spatial organization of the genome." Molecular Biology 49, no. 1 (January 2015): 21–39. http://dx.doi.org/10.1134/s0026893315010033.
Soutoglou, E., and T. Misteli. "On the Contribution of Spatial Genome Organization to Cancerous Chromosome Translocations." JNCI Monographs 2008, no. 39 (July 1, 2008): 16–19. http://dx.doi.org/10.1093/jncimonographs/lgn017.
Stefanova, Maria E., Elizabeth Ing-Simmons, Stefan Stefanov, Ilya Flyamer, Heathcliff Dorado Garcia, Robert Schöpflin, Anton G. Henssen, Juan M. Vaquerizas, and Stefan Mundlos. "Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters." Cells 12, no. 15 (August 4, 2023): 2001. http://dx.doi.org/10.3390/cells12152001.
Castellana, Michele, Sophia Hsin-Jung Li, and Ned S. Wingreen. "Spatial organization of bacterial transcription and translation." Proceedings of the National Academy of Sciences 113, no. 33 (August 2, 2016): 9286–91. http://dx.doi.org/10.1073/pnas.1604995113.
Liang, Jiangtao, Simon M. Bondarenko, Igor V. Sharakhov, and Maria V. Sharakhova. "Visualization of the Linear and Spatial Organization of Chromosomes in Mosquitoes." Cold Spring Harbor Protocols 2022, no. 12 (August 5, 2022): pdb.top107732. http://dx.doi.org/10.1101/pdb.top107732.
Kantidze, Omar L., and Sergey V. Razin. "Weak interactions in higher-order chromatin organization." Nucleic Acids Research 48, no. 9 (April 20, 2020): 4614–26. http://dx.doi.org/10.1093/nar/gkaa261.
Di Pierro, Michele, Davit A. Potoyan, Peter G. Wolynes, and José N. Onuchic. "Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes." Proceedings of the National Academy of Sciences 115, no. 30 (July 9, 2018): 7753–58. http://dx.doi.org/10.1073/pnas.1806297115.
Williams, Adam, and Richard A. Flavell. "The role of CTCF in regulating nuclear organization." Journal of Experimental Medicine 205, no. 4 (March 17, 2008): 747–50. http://dx.doi.org/10.1084/jem.20080066.
Kim, Yoori, and Hongtao Yu. "Shaping of the 3D genome by the ATPase machine cohesin." Experimental & Molecular Medicine 52, no. 12 (December 2020): 1891–97. http://dx.doi.org/10.1038/s12276-020-00526-2.
Wang, Qixuan, Juan Wang, Radhika Mathur, Mark W. Youngblood, Qiushi Jin, Ye Hou, Lena A. Stasiak, Yu Luan, Joseph F. Costello, and Feng Yue. "Abstract 5676: Spatial 3D genome organization reveals intratumor heterogeneity in primary glioblastoma samples." Cancer Research 84, no. 6_Supplement (March 22, 2024): 5676. http://dx.doi.org/10.1158/1538-7445.am2024-5676.
Bunnik, Evelien M., Aarthi Venkat, Jianlin Shao, Kathryn E. McGovern, Gayani Batugedara, Danielle Worth, Jacques Prudhomme, et al. "Comparative 3D genome organization in apicomplexan parasites." Proceedings of the National Academy of Sciences 116, no. 8 (February 5, 2019): 3183–92. http://dx.doi.org/10.1073/pnas.1810815116.
Jacobson, E., M. H. Vickers, J. K. Perry, and J. M. O’Sullivan. "Genome organization: connecting the developmental origins of disease and genetic variation." Journal of Developmental Origins of Health and Disease 9, no. 3 (August 29, 2017): 260–65. http://dx.doi.org/10.1017/s2040174417000678.
Razin, S. V. "Spatial organization of the eukaryotic genome and the action of epigenetic mechanisms." Russian Journal of Genetics 42, no. 12 (December 2006): 1353–61. http://dx.doi.org/10.1134/s1022795406120015.
Plaza-Jennings, Amara, Aditi Valada, and Schahram Akbarian. "3D Genome Plasticity in Normal and Diseased Neurodevelopment." Genes 13, no. 11 (November 1, 2022): 1999. http://dx.doi.org/10.3390/genes13111999.
Erenpreisa, Jekaterina, Alessandro Giuliani, Kenichi Yoshikawa, Martin Falk, Georg Hildenbrand, Kristine Salmina, Talivaldis Freivalds, et al. "Spatial-Temporal Genome Regulation in Stress-Response and Cell-Fate Change." International Journal of Molecular Sciences 24, no. 3 (January 31, 2023): 2658. http://dx.doi.org/10.3390/ijms24032658.
Neems, Daniel S., Arturo G. Garza-Gongora, Erica D. Smith, and Steven T. Kosak. "Topologically associated domains enriched for lineage-specific genes reveal expression-dependent nuclear topologies during myogenesis." Proceedings of the National Academy of Sciences 113, no. 12 (March 8, 2016): E1691—E1700. http://dx.doi.org/10.1073/pnas.1521826113.
Powell, D., D. G. Cran, C. Jennings, and R. Jones. "Spatial organization of repetitive DNA sequences in the bovine sperm nucleus." Journal of Cell Science 97, no. 1 (September 1, 1990): 185–91. http://dx.doi.org/10.1242/jcs.97.1.185.
Wu, Shuai, Nail Fatkhutdinov, Leah Rosin, Jennifer M. Luppino, Osamu Iwasaki, Hideki Tanizawa, Hsin-Yao Tang, et al. "ARID1A spatially partitions interphase chromosomes." Science Advances 5, no. 5 (May 2019): eaaw5294. http://dx.doi.org/10.1126/sciadv.aaw5294.
Dias, João Diogo, Nazim Sarica, Axel Cournac, Romain Koszul, and Christine Neuveut. "Crosstalk between Hepatitis B Virus and the 3D Genome Structure." Viruses 14, no. 2 (February 21, 2022): 445. http://dx.doi.org/10.3390/v14020445.