Добірка наукової літератури з теми "Estuaries New Zealand"

Abstract We developed a method to predict the susceptibility of New Zealand estuaries to eutrophication. This method predicts macroalgae and phytoplankton responses to potential nutrient concentrations and flushing times, obtained nationally from simple dilution models, a GIS land-use model and physical estuary properties. Macroalgal response was based on an empirically derived relationship between potential nitrogen concentrations and an established macroalgal index (EQR) and phytoplankton response using an analytical growth model. Intertidal area was used to determine which primary producer was likely to lead to eutrophic conditions within estuaries. We calculated the eutrophication susceptibility of 399 New Zealand estuaries and assigned them to susceptibility bands A (lowest expected impact) to D (highest expected impact). Twenty-seven percent of New Zealand estuaries have high or very high eutrophication susceptibilities (band C or D), mostly (63% of band C and D) due to macroalgae. The physical properties of estuaries strongly influence susceptibility to macroalgae or phytoplankton blooms, and estuaries with similar physical properties cluster spatially around New Zealand’s coasts. As a result, regional patterns in susceptibility are apparent due to a combination of estuary types and land use patterns. The few areas in New Zealand with consistently low estuary eutrophication susceptibilities are either undeveloped or have estuaries with short flushing times, low intertidal area and/or minimal tidal influx. Estuaries with conditions favourable for macroalgae are most at risk. Our approach provides estuary-integrated susceptibility scores likely to be of use as a regional or national screening tool to prioritise more in-depth estuary assessments, to evaluate likely responses to altered nutrient loading regimes and assist in developing management strategies for estuaries.

Fish assemblages of New Zealand estuaries are poorly studied, and knowledge of the effects of estuary–ocean connections on the ichthyofaunal composition of estuaries remains limited. Understanding the status of fish composition of estuaries is crucial for planning for sustainable management of aquatic ecosystems. In the present study we sampled fish using a seine net from lower reaches of six permanently open estuaries and six intermittently closed and open lakes or lagoons (ICOLLs) along the Otago coastline during winter 2016 and summer 2017. Marked differences in ichthyofaunal composition were observed in the shallow littoral habitats of permanently open estuaries and ICOLLs. Fish assemblages reflected estuary–ocean connection status of estuaries during both seasons. ICOLLs showed greater fish abundance than permanently open systems. Fish abundance was higher in summer than in winter in both estuary types. Fish species with marine–estuarine opportunist and estuarine–migrant life histories dominated permanently open estuaries. Conversely, species with a diadromous life history but known to form landlocked populations were abundant in ICOLLs. Salinity and temperature were correlated with fish abundance in both estuary types.

Estuarine fish habitats are vulnerable to human impacts and are poorly studied. We surveyed 69 of New Zealand’s 443 estuaries across 1500 km to: determine species composition of small fishes; model and predict their richness, occurrence and abundance; test marine classification schemes as a basis for Marine Protected Areas; and inform impact mitigation measures. Boosted regression tree models produced acceptable fits for richness and occurrence at estuary and site scales and abundance at the site scale. Richness was greatest in northern North Island; the best predictors were estuary area and area of intertidal habitat. Within estuaries, richness increased towards the head, as water clarity declined and the substratum became muddier. Air temperature, estuary and intertidal area, tidal range and freshwater and seawater influx were the best predictors of occurrence at the estuary scale; water temperature and salinity were important at the site scale. Biological classification schemes seldom improved model fits and have little predictive utility. Richness predictions were made for 380 estuaries and occurrence predictions for 16 species. These predictions inform resource managers about estuarine fishes within their jurisdiction, bypassing the need to undertake expensive field surveys. However, sampling of environmental predictors is still required to drive some models.

Mysids typically form a large proportion of the hyperbenthic faunal biomass in estuaries and are central to the functioning of estuarine food webs. The population dynamics, annual life histories and reproductive effort of two common temperate estuarine mysids, Tenagomysis chiltoni and T. novae-zealandiae, are described in the intermittently open Kaikorai Lagoon, New Zealand. Mysids were sampled by night, monthly from September 2003 to September 2004. Both species completed their life cycles in the lagoon. There was an apparent spatial separation of breeding populations, with T. chiltoni prevalent in the upper lagoon and T. novae-zealandiae dominating the lower lagoon. Densities were lowest in late winter and peaked in late summer/early autumn for both species. Both species exhibited multivoltine life cycles, with breeding peaks occurring in October 2003, December 2003 and February/March 2004 for T. novae-zealandiae, and October/November 2003 and February/March 2004 for T. chiltoni. Breeding strategy for both species varied over the year with the adult size, brood size and the reproductive effort of both T. novae-zealandiae and T. chiltoni all being highest in spring. The life histories of both T. novae-zealandiae and T. chiltoni in the Kaikorai Lagoon are comparable to life histories described for other temperate estuarine mysid species in large open estuaries, and were not significantly modified to cope with the unpredictable demands of life in an intermittent estuary.

This article reviews coastal geomorphological research published in New Zealand or international journals which has been carried out in New Zealand during the past ten years. All coastal environments are covered, including tidal inlets, estuaries and lagoons, beach, surfzone, nearshore and shelf environments, and rocky coasts. Applied coastal studies are also covered. While the New Zealand coastal science community remains relatively small, a significant body of work has been carried out, much of it innovative and unique. However, with 11 000 km of very diverse coastline covering 13 degrees of latitude available for study, there are many areas, geographical as well as disciplinary, that remain poorly researched.

Estimates of secondary production are essential to understanding how communities function. Estimates of secondary production for key species such as mysids are scarce, especially in estuarine environments. There are no estimates for mysid production in intermittently closed estuaries in the world, and no estimates for endemic New Zealand mysids. The current study presents length–mass models for two mysid species (Tenagomysis chiltoni Tattersall, 1923 and T. novae-zealandiae Thomson, 1900) from the south-eastern coast of the South Island, New Zealand. Kaikorai Lagoon, a small intermittently closed estuary, supported a large average annual biomass of T. novae-zealandiae (861.77 mg m–2) and T. chiltoni (971.90 mg m–2). The Hynes average-cohort method was used with length–mass models to estimate the annual production of breeding populations of T. chiltoni and T. novae-zealandiae collected over a year in parts of the Kaikorai Lagoon. Compared with similar temperate ecosystems worldwide, the studied ecosystem indicated high annual production (11 328.8 mg m–2 year–1 and 6585.2 mg m–2 year–1) and turnover rates (P : B) (13.16 and 6.78) for T. novae-zealandiae and T. chiltoni, respectively. High annual secondary production may be due to relatively stable hydrological and food conditions found in intermittently closed estuaries, leading to dense stable populations that are maintained through much of the year.

Estimates of secondary production are essential to understanding how communities function. Estimates of secondary production for key species such as mysids are scarce, especially in estuarine environments. There are no estimates for mysid production in intermittently closed estuaries in the world, and no estimates for endemic New Zealand mysids. The current study presents length?mass models for two mysid species (Tenagomysis chiltoni Tattersall, 1923 and T. novae-zealandiae Thomson, 1900) from the south-eastern coast of the South Island, New Zealand. Kaikorai Lagoon, a small intermittently closed estuary, supported a large average annual biomass of T. novae-zealandiae (861.77 mg m?2) and T. chiltoni (971.90 mg m?2). The Hynes average-cohort method was used with length?mass models to estimate the annual production of breeding populations of T. chiltoni and T. novae-zealandiae collected over a year in parts of the Kaikorai Lagoon. Compared with similar temperate ecosystems worldwide, the studied ecosystem indicated high annual production (11 328.8 mg m?2 year?1 and 6585.2 mg m?2 year?1) and turnover rates (P : B) (13.16 and 6.78) for T. novae-zealandiae and T. chiltoni, respectively. High annual secondary production may be due to relatively stable hydrological and food conditions found in intermittently closed estuaries, leading to dense stable populations that are maintained through much of the year.

Worldwide, estuaries are under increasing pressure from numerous contaminants. There is a need to develop reliable bioassay methodologies to assess the effects of these stressors on estuary health. This thesis aimed to develop and validate toxicity tests in a New Zealand marine harpacticoid copepod species for use in monitoring and evaluating the effects of estuarine pollution. A survey and toxicological assessment of a range of native copepod species resulted in the selection of Quinquelaophonte sp. as the ideal bioassay species. This selection was based on a broad regional distribution, ease of culture and high reproductive rate in the laboratory, sexual dimorphism, and sensitivity to contaminants. To validate the bioassay, spiked sediments were used to expose Quinquelaophonte sp. to three reference compounds representing important categories of estuarine chemical stressors: zinc (a metal), atrazine (a pesticide), and phenanthrene (a polyaromatic hydrocarbon). A method for spiking sediments that Quinquelaophonte sp. inhabit was developed to ensure even contaminant distribution in sediments. Two sediment bioassays using lethal and sublethal endpoints were validated, one acute (96 h) and one chronic (14 d). These assays incorporated both lethal and sublethal endpoints, which included reproductive output and mobility. Acute-to-chronic ratios were calculated for use in environmental risk assessment and to provide insight into the mode of action of the reference contaminants. The chronic sediment bioassay was used to assess sediment quality in three estuaries across New Zealand: Napier, Christchurch and Invercargill. This validated the bioassay for use with naturally-contaminated field sediments with varying mixtures of pollutants and sediment types (coarse sandy to fine silty organic rich sediments). Quinquelaophonte sp. was also tested to assess whether it can be used to characterise multi–generation impacts. After four generations of exposure to zinc, there were changes in acute sensitivity, indicating this species possesses mechanisms for acclimating or adapting to toxic stressors. Sediment bioassays in Quinquelaophonte sp. were successfully developed and validated, offering significant promise as a tool for monitoring effects of pollution in New Zealand estuaries.

Coastal lagoon systems are complex and dynamic environments that respond rapidly to the changes of fluvial, marine, climatic and anthropogenic influences. The purpose of this research was to investigate the morphology and dynamics of the New River Lagoon before and after the implementation of engineering outlet management using a methodological framework to analyse active process environments. This information was then used to determine the functional effectiveness of engineering management at reducing the risk of flooding and erosion to the local community and imposing minimal impacts on the environmental integrity of the lagoon system. This investigation used a multidisciplinary approach to investigate the morphology and dynamics of the New River Lagoon in relation to active process environments. Outlet dynamics, lagoon channel structure and adjacent shoreline stability were assessed over a decadal timescale prior to engineering management by analysing temporal aerial photographs. Following engineering management, the hydrology of the lagoon was investigated, along with the relationship between morphological changes to the artificial lagoon outlet and changes in lagoon hydrology, local wave climate and local precipitation levels. Water depth, conductivity and temperature records were used to explain lagoon hydrology and Global Navigation Satellite Surveying (GNSS) and weekly oblique photographs were used to explain and document changes in outlet morphology. Wave and rainfall data were used to explain the balances between marine and fluvial environments and their affects on outlet dynamics. Significant changes in lagoon morphology and dynamics were observed at the New River Lagoon between pre- and post-management periods, with the former considered more stable in terms of outlet migration patterns and hydrodynamics. The lagoon outlet prior to engineering management showed morphological characteristics similar to hapua-type systems, migrating along the coastline and forming shore-parallel outlet channels in response to the dominance of a strong longshore drift of sediment. Current outlet dynamics are restricted by artificial outlet management and typically cycle intermittently between open/closed phases in response to variable levels of rainfall and marine sediment supply; characteristics similar to Intermittently Open/Closed Lagoons (ICOLs) found in areas of Australia and South Africa. Hydrologically, the lagoon is considered to be located on a continuum between hapua and estuaries during pre- and post-management periods due to intermittent tidal influences. However, artificial outlet management has significantly increased the frequency and duration of tidal exchange, which now classifies the New River lagoon closer to an estuarine environment. The artificial lagoon outlet and associated breakwater were effective at flushing high flows of water during the study period. However, the outlet was prone to blockage and migration; two morphological states capable of causing flooding. Currently, the greatest risks to flooding at the lagoon are flash floods, following dry periods where marine sediment has established a solid barrier across the outlet, during which water levels are already elevated. Increases in tidal influences, lower lagoon water levels and an increase in lagoon salinity are a direct result of engineering management intervention. An increase in freshwater flushing through the lagoon outlet and deepened of the outlet channel to below sea level, allows for pronounced tidal influences during outlet opening. Restriction of the lagoon outlet from forming a natural migration outlet channel in the direction of littoral drift has meant the outlet is most often oriented perpendicular to the sea, as appose to at an angle away from the direction of incoming waves and currents, further increasing tidal influences. In order to make sustainable management decisions, future management of the lagoon system must weight-up the effects of a high energy coastline to the integrity of the engineering structure, the impact of the structure on the lagoons environmental integrity and the outlets ability to become unstable and cause a flood risk. The findings of this research have improved the understanding of the New River Lagoon system, and its response to engineering management intervention, while adding to the understanding of river-mouth lagoon systems both nationally and internationally.

The research presented in this thesis was undertaken in order to develop an understanding of the biology of Perna canaliculus sufficient to allow for commercial hatchery based production of Greenshell™ mussel spat. Hatchery production is an alternative to unreliable and inconsistent wild spat collection. In a Perna canaliculus population followed for one year spawning occurred in early spring and late summer. Three quantitative histological measures of gonad maturity utilising image analysis technology and a qualitative classification system were compared. Measuring the relative surface area comprised of gametes on histological sections was found to be the most reliable method. A practical gonad visual index to determine the reproductive condition of adults for the selection of broodstock was developed and found to be highly effective as a means of predicting induced spawning success. Serotonin was not effective for inducing spawning of Perna canaliculus. Temperature shock and the use of stripped gametes was however found to be a reliable spawning induction method. Relative gamete concentration, gamete age, temperature, sperm half life and gamete contact times were all found to have effects on fertilisation success for Perna canaliculus. Sperm concentration and the conditions of sperm aging were particularly important. Fertilisation kinetics of Perna canaliculus gametes modelled using the Vogel-Czihak-Chang-Wolf method suggested that 5% of sperm-egg contacts lead to successful fertilisation. Broodstock management protocols that could be used to condition the adult of Perna canaliculus were investigated in order to enhance and prolong the natural reproductive season. Research suggested that for successful broodstock conditioning animals should already have begun gametogenesis at the time conditioning is commenced. Successful conditioning of Perna canaliculus was achieved at temperatures between l0 and 16°C over a period of about 50 days. A diet ration above 2-3% of the dry meat mass per day is suggested. A trial examining non-algal diet supplements suggest a mixture of yeast and lipid emulsion may have some potential value. Photoperiod manipulation did not effect the reproductive condition of Perna canaliculus. The yield of veliger larvae was significantly enhanced if embryo culture water was treated with 1.0 mg/l EDTA. Veliger yield was not significantly affected at densities below 50 embryos/ml. Perna canaliculus larvae grew most rapidly and survived well at the salinity of 35 ppt. Larvae grew most rapidly when cultured at low densities. Experiments suggest that early larvae can be cultured at 5-10/ml, however late stage larvae grew most rapidly when cultured at l/ml. Perna canaliculus larvae displayed best growth and good survival if fed a mixed flagellate-diatom diet comprising Isochrysis galbana (T-Iso) and Chaetoceros calcitrans. The optimal diet ration, as a function of larval size, increased from about 20 cells/μl Isochrysis galbana (T-Iso) to around 150 cells/μl through the larval development period. Thyroxine between the concentrations of l0-5 and l0-8 M did not have an observable effect on larval developmental rate or eye spot development. Down welling settlement systems were found to be generally successful for Perna canaliculus lanrae. L-DOPA was also demonstrated to enhance the settlement and metamorphosis of Perna canaliculus pediveligers.

Interactions among large brown macroalgae, sea urchins, and fishes were investigated in northeastern New Zealand during the period 1988 - 1993. The Cape Rodney to Okakari Point Marine Reserve was the site of many of these investigations. The patterns of abundance of large brown macroalgae and urchins down depth gradients over a wide geographic range were compared with those reported from earlier studies, and 3 major trends were identified. First, the fucoid alga Carpophyllum flexuosum now occurs at many sites which are exposed to wave action, in contrast to earlier studies. This alga occurred most abundantly on urchin-grazed coralline flat areas. Second, at four sites in the Marine Reserve, the densities of the echinometrid urchin Evechinus chloroticus decreased with increasing depth, rather than reaching maximal densities at mid-depths, as had previously been described. Finally, at sites of decreased exposure to wave action, the coralline flats habitat did not occur at all, and dense stands of. C. flexuosum occurred, in conjunction with the ubiquitous laminarian alga, Ecklonia radiata. Following the discovery of this new algal component to exposed rocky reefs, a more detailed study of its population characteristics was initiated. The population size structure of C. flexuosum on coralline flat areas was markedly different from that of the same species in sites sheltered from wave action. These differences occurred at both offshore islands and sites near Leigh, suggesting that it was a general pattern. C. flexuosum plants on coralline flats were smaller than those from sheltered sites, and had a greater number of smaller laminae, heavier stipes, and a greater degree of branching. There was some evidence of temporal change in the morphology of C. flexuosum from coralline flats. Comparisons between a site with C. flexuosum and a site with coralline flats suggested that the activity of fish was 75% lower in the vegetated than in the unvegetated site, and the feeding rate in the vegetated site was less than 50% that in the unvegetated site. I speculate that future effects on fish activity of the invasion of C. flexuosum into a habitat which previously lacked macroalgal vegetation may depend on changes in the morphology of plants. An investigation of many aspects of the biology of E. chloroticus in different habitats was undertaken. Analysis of the body dimensions of E. chloroticus suggested that this species was relatively tall compared to other echinometrids (average ratio of test height: test diameter = 0.54), Comparisons among habitats with differing amounts of vegetation revealed only small differences in the relationship between test diameter and test height. Small E. chloroticus (<40 mm test diameter) lived in crevices, while larger individuals grazed freely over the substratum. In vegetated habitats, the crevice-dwelling habit was maintained at test diameters about l0 mm greater than in unvegetated habitats. Very small (<20 mm test diameter) E. chloroticus frequently covered themselves with shell. Population size structures of E. chloroticus within the Cape Rodney to Okakari Point Marine Reserve were bimodal; other localities had unimodal populations. Modal sizes varied among localities, with smallest modes (50-60 mm TD) being found at Inner Hauraki Gulf sites, and largest modes at the offshore Mokohinau Islands (70-80 mm TD). Habitat did not predictably affect population size structure. A bimodal population structure was maintained at Waterfall Reef rock flats throughout the 5-year study period. Gonad size showed seasonal fluctuations at several sites, being greatest in summer. There were few consistent differences in gonad size between biological habitats. Gonad colour varied among sites and habitats, with orange gonads generally being more prevalent in vegetated habitats, and black gonads being represented more in unvegetated habitats. Smaller urchins had greater proportions of orange gonads, while larger urchins had greater proportions of brown and black gonads. Although highly variable among individual urchins, movement of E. chloroticus was greater at unvegetated sites (0.7 m per 5 days) than at vegetated sites (0.4 m per 5 days), in the Marine Reserve. Feeding of E. chloroticus was studied at a number of sites in the Marine Reserve. Urchins frequently consumed drift algae, particularly E. radiata. C. flexuosum was consumed at less than half the rate of other macroalgae in several laboratory feeding experiments, and was chosen least frequently in a field assay of feeding preferences among 8 species of macroalgae. Boosting densities of E. chloroticus in stands of E. radiata to 60 m-2 led to destructive grazing of plants over a 2 month period - at lower densities, the urchins dispersed. Densities of C. flexuosum were effectively unchanged when urchin densities were increased to these elevated levels. As a result of these observations I speculate that feeding preferences of E. chloroticus may have a role in allowing C. flexuosum to survive on coralline flats. In a laboratory experiment, urchins from a feeding aggregation did not graze algae at higher rates than individuals from outside aggregations. Diets of both E. radiata and C. flexuosum consistently produced similar gonad volumes in urchins held in the laboratory, although gonad volumes produced were low. A preliminary experiment suggested that C. flexuosum from exposed sites was consumed at lower rates than C. flexuosum from sites which were sheltered from wave action. These differences in palatability are mirrored in the formation of stable borders between coralline flats and C. flexuosum of the sheltered morphology, and the ability of C. flexuosum of the exposed morphology to survive in the coralline flats habitat. The fish fauna of the Cape Rodney to Okakari Point Marine Reserve was shown to be different from that of a nearby area. A number of species were more abundant within the Marine Reserve. Subsequent surveys showed that there were differences in abundances of 3 large carnivorous fishes among sites within the Marine Reserve, and that population size structure and the distance within which divers could approach one species, (Pagrus auratus), clearly varied between areas within the Marine Reserve. Mean standard length of P. auratus in the central marine reserve was 40% larger than that of P. auratus outside the central marine reserve, and the average minimum approach distance was 70% less in the central marine reserve. Feeding of fish by humans in the central part of the Marine Reserve was suggested to be the main cause of the differences in responses to divers. Population size structure of, and crevice occupancy by, E. chloroticus, clearly differed between the Marine Reserve and an adjacent area, with bimodal population size structures and a 10 mm greater size of crevice occupancy occurring in the Marine Reserve. The implications of these findings for extrapolating from experiments done in one area to other areas are discussed. The major biological components of rocky reef habitats identified in this study were broadly similar to those identified in previous studies in northeastern New Zealand, and have parallels in overseas studies. Long term changes to the flora of rocky reefs in northeastern New Zealand have occurred, and appear to persist by a mechanism which had previously been discounted. Similar processes to those observed in overseas studies appear to maintain habitats (consistent recruitment of algae or urchins to habitats which they dominate), or cause them to change from one habitat state to another (e.g. grazing outbreaks by urchins). However, the predictability of the persistence of these habitats at a particular site appears to be low. Further, the precise mechanisms whereby habitats may change from one to another may also be unpredictable. I argue that there is little scope for general statements concerning the spatial and temporal occurrence, or mode, of habitat transitions on temperate subtidal reefs. This study emphasises the value of repeated descriptions of patterns of abundance, and highlights problems of extrapolation and generalisation in marine ecology. Insufficient information exists at present to comment adequately on the persistence of subtidal habitat types. This may in part stem from the types of information which have been collected in the past. Methodological problems with the use of quadrats to sample densities of organisms in areas of differing topography are therefore addressed. In conclusion, it is suggested that sampling protocols which incorporate a variety of information, gathered over as wide an area, and as intensively as possible, should be used in future research of this type.

The eggs and larvae of the New Zealand snapper Pagrus auratus are pelagic with early buoyancy provided by dilute body fluids. The swimbladder begins to develop on the third day after hatch from a dorsal evagination of the gut tube. Communication w1h the gut is lost on about the tenth day following pneumatic inflation at around day eight. At this age the gas gland system appears fully functional and capable of secreting gas. By the age of settlement at around 30 days the swimbladder is a fully functional replica of the adult form except for the lack of a resorbent capillary system which does not develop until later in juvenile life. The swimbladder of the adult is of the euphysoclist form with a dorsally located resorbent oval area and sits high in the pleural cavity. The ventral tunica externa is firmly attached to the connective tissue lining the pleural space. The adult swimbladder displaces 5.6% of the volume of the body and its volume is regulated to provide near neutral buoyancy. The connective tissue integument provides almost no restriction to volume changes brought about by vertical movements of the fish and the swimbladder obeys Boyle's Law for physiological pressure changes. The ability of the connective tissue of the tunica externa to accommodate large tissue strains is due to massive regular crimping of otherwise straight collagen fibrils allowing reversible extensions up to 130%. In all other respects however the tissue structure of the tunica externa is consistent with a tissue providing an active mechanical role. The fibrillar morphology and physicochemical properties of swimbladder collagen is consistent with the vertebrate type I form however there are interesting variations in collagen form distributed throughout the swimbladder. Fibrillar morphology of the highly extensible tunica interna is significantly different to that of the tunica externa and appears to play very little mechanical rote. The extensibilty of the tunica externa appears to be regulated by physiological stress and related to the past history of tissue strain.

The New Zealand (NZ) sea lion Phocarctos hookeri is the only pinniped endemic to NZ with a population of approximately 12,000 individuals. Its breeding range is currently restricted to NZ sub-Antarctic islands, and it has failed to recolonise its pristine distribution around the NZ main islands despite its protection since 1881. The current hypothesis is that the population growth of this pinniped is limited by the distribution of suitable prey on the Auckland Islands (50°30'S, 166°E) shelf, and by the direct and indirect pressure exerted by the arrow squid Nototodarus sloani fishery. However, this hypothesis has not been fully tested to date as there has been limited information on the diet of the NZ sea lion and their potential prey. The objective of this thesis is to analyse the diet of NZ sea lions over several years with particular emphasis on the most reproductively important segment of the population: lactating females. This thesis provides the first quantification by percentage mass of the diet of NZ sea lion using a combination of stomach content analysis, qualitative fatty acid (FA) analysis, and quantitative FA signature analysis (QFASA). Stomach contents and blubber FAs were analysed from 121 individuals incidentally caught (by-caught) in the southern arrow squid fishery from the years 1997 to 2006. The blubber FAs of 78 freeranging lactating females captured at Enderby Island, Auckland Islands, were also examined during January and February of 2000 to 2005. Data obtained from both stomach analysis and QFASA indicate that arrow squid, rattails Macrouridae, hoki Macruronus novaezelandiae and red cod Pseudophycis bachus are key prey species for NZ sea lions in the Auckland Islands region. Because these prey species live mostly at depths greater than 200 m, lactating females must undertake long foraging trips and dive regularly to greater depths than other sea lion species. Data from QFASA indicates that this foraging pattern is conducted over an extended period through the summer and autumn. The daily food requirement of a lactating female was estimated by a simple energetic model to be greater than 20% of its body mass. During years of low arrow squid recruitment such as 1999 and 2001, the amounts of squid required by the NZ sea lion population may have been similar to the amount harvested by the fishery, suggesting that resource competition is likely to occur between the arrow squid fishery and NZ sea lions in years of low squid abundance. Half of the fishing activity of the southern squid fishery occurs in the north of the Auckland Islands shelf where NZ sea lions forage, leading to incidental captures every year. This research emphasises that management of the NZ sea lion must not only consider the direct interactions with the arrow squid fishery, but also the likelihood of food resource competition between the fishery and NZ sea lions.

Waterfowl are known to be capable of influencing wetland ecology in a number of ways, sometimes to the detriment of other species that also inhabit this type of environment. Western Golden Bay including Farewell Spit is one of the largest areas of intertidal sand flat habitat in New Zealand and supports a wide array of species including internationally important populations of bar-tailed godwits (Limosa lapponica) and red knot (Calidris canutus). These species, particularly red knot, have declined in number over the last the 25 years at this site. Another numerous species at this site, the black swan (Cygnus atratus), has been suggested as a possible contributor to the observed decline in wader numbers through their impact on the habitat. This thesis presents the findings of a research project on the role of black swans in the tidal seagrass (Zostera muelleri) ecosystem in western Golden Bay carried out between October 2007 and October 2008. In an effort create a clear picture of what role the black swans play in this environment the project focused on four major aspects of swan-ecosystem interactions. The first of these looked at the activity patterns of black swan. This showed the swans’ activity is largely dictated by the tidal cycle with foraging occurring during the intertidal period when the seagrass is accessible while roosting is mostly confined to around high and low tides. The second part of the project explored the influence black swans have on the tidal seagrass landscape through their foraging habits. This showed that while swan foraging occurs across the tide flats it is concentrated on denser patches, on both small (meters) and large (hectares) scales. Experimental grubbings showed that the grubbing activity of swans is capable of forming and expanding bare sand patches within seagrass beds and that these bare patches can persist for at least two months. The third part of the project focused on the direct impacts of swan foraging on the seagrass and associated benthic invertebrates. Exclusion plots showed that at some sites swan foraging can significantly reduce Zostera biomass and invertebrate biodiversity. The final aspect examined was the role of swan in biomass and nutrient cycling. A faecal deposition survey showed swans consume 23.40 g DW ha-1 day-1 of Zostera. The average intake rate was 27.25 g DW ha-1 day-1. Nutrient analysis of seagrass 4 showed that shoot material has significantly higher N, P, Ca and fibre than rhizome and that rhizome has significantly more soluble carbohydrates than shoots. On the basis of the swans’ direct and/or indirect influences on Zostera muelleri beds and the associated invertebrate fauna, swans could arguably be considered to be a major ecosystem engineer in the intertidal sandflats of Golden Bay.

Orca (Orcinus orca), also known as killer whales, are more widely recognised than other marine mammals. Although they have been reported from all oceans of the world, including the seas around New Zealand, information above anecdotal notes exists for only a few places. Orca are an apex marine predator that exhibits cultural differences in diet, vocalisations, and behaviour, between and within populations. This study was established to determine baseline information on New Zealand orca and to provide recommendations for future management and conservation. The conservation status of orca worldwide is poorly known, although two populations of the Pacific North West Coast of North America have recently been classified as ‘Threatened’ and ‘Vulnerable’. Photo identification was used to determine the population size, distribution around New Zealand waters, as well as range use and association among individuals. The total New Zealand orca population is small (range 65-167 animals, with 115 calculated alive in 1997). Resighting rates were high, with 75 % (n = 88) of the animals seen on more than two occasions. The mean number of sightings for the 117 photo-identified animals was 5.4, the mode was one sighting, and the median 9 – 10 sightings. One orca was photographed over a 20 year period. Population structure, frequency of association with others, and other social behaviours were used to determine population demographics. The New Zealand orca population appears to be made up of at least three sub-populations based on geographic distribution (North-Island-only, South- Island-only and North+South-Island sub-populations). Preliminary mtDNA analysis supports the hypothesis that some New Zealand orca do not mix. The mean Association Indices within the North-Island-only and South-Island-only sub-populations are significantly greater than within the North+South-Island sub-population. Those animals sharing food had higher Association Indices than those who did not share food. Sex ratios appear similar within each sub-population and calves were present in each, suggesting all sub-populations are breeding. Feeding behaviour was observed to assess habitat use and differences between foraging strategies and prey preferences. Twenty four different species of prey have been recorded in the New Zealand orca diet. Of these, ten have not been recorded elsewhere. The prey consists of four types; rays (the most common food type), sharks, fin-fish and cetaceans (pinnipeds have not been identified as a prey source). Foraging strategies were different for each prey type, with benthic foraging for rays in shallow waters the most diverse strategy used in New Zealand. Food sharing was observed for all prey types. One of the three proposed New Zealand subpopulations appears to be generalist or opportunistic foragers, feeding on all four prey types, another sub-population slightly less so, feeding on three prey types, and the third sub-population appears to be a more specialist forager, only recorded taking one prey type (cetaceans). Potential threats to orca, in addition to small population size, such as bioaccumulation of toxic chemicals, oil spills, boat strikes and shootings are considered and recommendations for conservation and future management are offered. Whether the three sub-divisions within the New Zealand orca population are reproductively isolated and hence require separate management, and whether there is further sub-division within the proposed North+South-Island sub-population, requires further study including genetic analysis. Some level of ongoing monitoring is recommended to ensure that the population of New Zealand orca does not decline. In addition, records of stranding locations and details of strandings are appended. Twenty-four live strandings occurred, involving 63 killer whales, of which 17 animals were successfully refloated and two of these resighted. One was seen after three years (nine resightings) and the other after four months (10 resightings). Refloating stranded orca is recommended.

The New Zealand green-lipped mussel, Perna canaliculus, is farmed by an aquaculture industry (> NZ$ 150 million/year) that is dependent on mussel juveniles (spat) collected from unpredictable and unreliable wild sources for more than 80% of its mussel seed requirements. Most wild-caught spat is collected from the surf zone at Ninety Mile Beach, northern New Zealand, where unique environmental conditions cause the accumulation and transport of spat attached to drift algae, which arrive to the shore in great quantities (up to 100 tonnes at once). This study is the first to investigate the ecology of mussels at Ninety Mile Beach throughout their life history, including reproductive behavior, micro-scale settlement patterns on filamentous macroalgae, accumulation and transport of mussel spat to the shore, colonization of the rocky intertidal, and adult population dynamics. Histologic investigation of 4 intertidal and 2 subtidal populations revealed that females and males were well-synchronized throughout their reproductive cycles, with a prolonged spawning season from June to December, when temperatures were lowest and rising. Comparisons of gonad indices and maximum shell length indicated high productivity in certain populations, which likely contribute to the high larval availability of the area. Experiments showed that mussel spat preferentially settled on fine-branching natural and artificial substrata, with correlation evident between mussel shell size and degree of branching. Furthermore, greater numbers of mussels settled on node versus internode areas within natural and artificial substrata. Chemical cues for mussel settlement also were studied using phytogel plates spiked with algal extracts, which were preferred over control plates by mussel larvae/post-larvae in the field, and by hatchery-reared larvae in the laboratory. Three intertidal populations were investigated at different temporal and spatial scales. Mussel concentrations in seawater were higher after spawning for both small mussels (< 0.25 mm) in August, and for larger mussels (> 0.5 mm) in March. Settlement patterns within quadrats cleared of mussels in 2 habitats (adult mussel bed and adjacent areas covered with algae) were studied from July 1999-March 2001. Primary settlement (mussels < 0.5 mm) was found to dominate the algal habitats at the beginning of the spawning season in August, while secondary settlement (mussels > 2.0 mm) was higher in the adult mussel bed late in the spawning season (November-March). Monthly surveys of undisturbed quadrats indicated that a peak in new recruitment coincided with a peak in adult mortality in August. At Scott Point, massive mortality for 2 years in August was followed by a dramatic re-colonization of the empty spaces by juveniles. Settlement patterns of mussels on suspended ropes in the water column were investigated at 3 water depths inside and outside Ahipara Bay during 2 spawning seasons (1999-2000). Mussel settlement was higher for small mussels (< 0.49 mm) in shallower water (2 m water depth) in August, and higher for larger mussels (> 1.0 mm) at greater depths (18 m water depth) in September-December. Mussels found on shallow-water ropes may have settled directly from the plankton, whereas mussels on ropes near the bottom (18 m) may have transferred from macroalgae tumbling on the seafloor. Environmental conditions associated with mussel spat arrival to the beach (spatfall events) were studied by statistical analysis (1990-1998; daily, monthly, inter-annually) of wind speed/direction, tidal range, water temperature, swell height/direction, and records of spatfall events/amounts. Spatfall events/amounts were more abundant during days of strong offshore winds. Swell height in the onshore direction was significantly correlated with spatfall events/amounts. Storm events (wind speeds > 20 m/s) were most frequent between May-August; spatfall events/amounts were more numerous 4 months later (September-October). Years with more storm events (El Niño/La Niña episodes) were associated with significantly higher spatfall events/amounts.

In the 1880s, Eastern Australian estuaries supported thriving oyster industries. They supplied lime for building early in Australia’s development, but as cities and towns grew, it was the briny salty taste for this delicacy that saw the growth of the sector. When the oyster beds at the east coast of Australia became depleted, fishermen looked to New Zealand, where the same Oyster species grew, to supply cultivation stock for the Australian market. It was presumed that transfers would have the same impact as those already being moved within the Australian ecological networks. That is: it would present no problem at all. What was overlooked in this intercolonial exchange was the presence of the mudworm in the New Zealand estuaries. Mudworm co-habitats with oysters without killing them, but impedes the healthy development of the oysters making them inedible. This chapter places the mudworm at the center of a new narrative in the ecological networks of oysters. Rather than articulating the mudworm as a damaging invasive species, it argues that the mudworm was an agent of change that caused the fishermen to adjust their methods of oyster cultivation.