Статті в журналах з теми "Domain-architecture specific residues"
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Kim, Seyeun, Brian M. Swalla, and Jeffrey F. Gardner. "Structure-Function Analysis of IntDOT." Journal of Bacteriology 192, no. 2 (November 13, 2009): 575–86. http://dx.doi.org/10.1128/jb.01052-09.
Повний текст джерелаSu, Ya-Chi, Dipali Sinha, and Peter N. Walsh. "Localization of Ligand-Binding Exosites In the Catalytic Domain of Factor XIa." Blood 116, no. 21 (November 19, 2010): 1148. http://dx.doi.org/10.1182/blood.v116.21.1148.1148.
Повний текст джерелаHéja, László, Ágnes Simon, Zsolt Szabó, and Julianna Kardos. "Connexons Coupling to Gap Junction Channel: Potential Role for Extracellular Protein Stabilization Centers." Biomolecules 12, no. 1 (December 30, 2021): 49. http://dx.doi.org/10.3390/biom12010049.
Повний текст джерелаMuleya, Victor, Claudius Marondedze, Janet I. Wheeler, Ludivine Thomas, Yee-Fong Mok, Michael D. W. Griffin, David T. Manallack, et al. "Phosphorylation of the dimeric cytoplasmic domain of the phytosulfokine receptor, PSKR1." Biochemical Journal 473, no. 19 (September 27, 2016): 3081–98. http://dx.doi.org/10.1042/bcj20160593.
Повний текст джерелаRippa, Valentina, Angela Amoresano, Carla Esposito, Paolo Landini, Michael Volkert, and Angela Duilio. "Specific DNA Binding and Regulation of Its Own Expression by the AidB Protein in Escherichia coli." Journal of Bacteriology 192, no. 23 (October 1, 2010): 6136–42. http://dx.doi.org/10.1128/jb.00858-10.
Повний текст джерелаPetsana, Marina, Ahmed F. Roumia, Pantelis G. Bagos, Haralabia Boleti, and Georgia G. Braliou. "In Silico Identification and Analysis of Proteins Containing the Phox Homology Phosphoinositide-Binding Domain in Kinetoplastea Protists: Evolutionary Conservation and Uniqueness of Phox-Homology-Domain-Containing Protein Architectures." International Journal of Molecular Sciences 24, no. 14 (July 15, 2023): 11521. http://dx.doi.org/10.3390/ijms241411521.
Повний текст джерелаLi, Xiaochun, Feiran Lu, Michael N. Trinh, Philip Schmiege, Joachim Seemann, Jiawei Wang, and Günter Blobel. "3.3 Å structure of Niemann–Pick C1 protein reveals insights into the function of the C-terminal luminal domain in cholesterol transport." Proceedings of the National Academy of Sciences 114, no. 34 (August 7, 2017): 9116–21. http://dx.doi.org/10.1073/pnas.1711716114.
Повний текст джерелаSchumacher, Maria A., and Wenjie Zeng. "Structures of the activator ofK. pneumoniabiofilm formation, MrkH, indicates PilZ domains involved in c-di-GMP and DNA binding." Proceedings of the National Academy of Sciences 113, no. 36 (August 22, 2016): 10067–72. http://dx.doi.org/10.1073/pnas.1607503113.
Повний текст джерелаSchmalzer, Katherine M., Marc A. Benson, and Dara W. Frank. "Activation of ExoU Phospholipase Activity Requires Specific C-Terminal Regions." Journal of Bacteriology 192, no. 7 (January 22, 2010): 1801–12. http://dx.doi.org/10.1128/jb.00904-09.
Повний текст джерелаItoh, Yuzuru, Markus J. Bröcker, Shun-ichi Sekine, Gifty Hammond, Shiro Suetsugu, Dieter Söll, and Shigeyuki Yokoyama. "Decameric SelA•tRNASec Ring Structure Reveals Mechanism of Bacterial Selenocysteine Formation." Science 340, no. 6128 (April 4, 2013): 75–78. http://dx.doi.org/10.1126/science.1229521.
Повний текст джерелаLee, D. G., and S. P. Bell. "Architecture of the yeast origin recognition complex bound to origins of DNA replication." Molecular and Cellular Biology 17, no. 12 (December 1997): 7159–68. http://dx.doi.org/10.1128/mcb.17.12.7159.
Повний текст джерелаHuttenlauch, I., N. Geisler, U. Plessmann, R. K. Peck, K. Weber, and R. Stick. "Major epiplasmic proteins of ciliates are articulins: cloning, recombinant expression, and structural characterization." Journal of Cell Biology 130, no. 6 (September 15, 1995): 1401–12. http://dx.doi.org/10.1083/jcb.130.6.1401.
Повний текст джерелаNishiyama, Aki, Sakura Matsuta, Genki Chaya, Takafumi Itoh, Kotaro Miura та Yukimoto Iwasaki. "Identification of Heterotrimeric G Protein γ3 Subunit in Rice Plasma Membrane". International Journal of Molecular Sciences 19, № 11 (14 листопада 2018): 3591. http://dx.doi.org/10.3390/ijms19113591.
Повний текст джерелаKouklis, P. D., T. Papamarcaki, A. Merdes, and S. D. Georgatos. "A potential role for the COOH-terminal domain in the lateral packing of type III intermediate filaments." Journal of Cell Biology 114, no. 4 (August 15, 1991): 773–86. http://dx.doi.org/10.1083/jcb.114.4.773.
Повний текст джерелаRenko, Miha, Marc Fiedler, Trevor J. Rutherford, Jonas V. Schaefer, Andreas Plückthun, and Mariann Bienz. "Rotational symmetry of the structured Chip/LDB-SSDP core module of the Wnt enhanceosome." Proceedings of the National Academy of Sciences 116, no. 42 (September 30, 2019): 20977–83. http://dx.doi.org/10.1073/pnas.1912705116.
Повний текст джерелаBontjer, Ilja, Aafke Land, Dirk Eggink, Erwin Verkade, Kiki Tuin, Chris Baldwin, Georgios Pollakis, et al. "Optimization of Human Immunodeficiency Virus Type 1 Envelope Glycoproteins with V1/V2 Deleted, Using Virus Evolution." Journal of Virology 83, no. 1 (October 15, 2008): 368–83. http://dx.doi.org/10.1128/jvi.01404-08.
Повний текст джерелаBilal Tufail, Muhammad, Muhammad Yasir, Dongyun Zuo, Hailiang Cheng, Mushtaque Ali, Abdul Hafeez, Mahtab Soomro, and Guoli Song. "Identification and Characterization of Phytocyanin Family Genes in Cotton Genomes." Genes 14, no. 3 (February 28, 2023): 611. http://dx.doi.org/10.3390/genes14030611.
Повний текст джерелаWhitelaw, M. L., J. A. Gustafsson, and L. Poellinger. "Identification of transactivation and repression functions of the dioxin receptor and its basic helix-loop-helix/PAS partner factor Arnt: inducible versus constitutive modes of regulation." Molecular and Cellular Biology 14, no. 12 (December 1994): 8343–55. http://dx.doi.org/10.1128/mcb.14.12.8343-8355.1994.
Повний текст джерелаWhitelaw, M. L., J. A. Gustafsson, and L. Poellinger. "Identification of transactivation and repression functions of the dioxin receptor and its basic helix-loop-helix/PAS partner factor Arnt: inducible versus constitutive modes of regulation." Molecular and Cellular Biology 14, no. 12 (December 1994): 8343–55. http://dx.doi.org/10.1128/mcb.14.12.8343.
Повний текст джерелаZhang, Hongyu, Jonathan M. Lee, Yuwei Wang, Li Dong, Kerry W. S. Ko, Louise Pelletier, and Zemin Yao. "Mutational analysis of the FXNPXY motif within LDL receptor-related protein 1 (LRP1) reveals the functional importance of the tyrosine residues in cell growth regulation and signal transduction." Biochemical Journal 409, no. 1 (December 11, 2007): 53–64. http://dx.doi.org/10.1042/bj20071127.
Повний текст джерелаMattagajasingh, Subhendra N., Shu-Ching Huang, Julia S. Hartenstein, Michael Snyder, Vincent T. Marchesi, and Edward J. Benz. "A Nonerythroid Isoform of Protein 4.1R Interacts with the Nuclear Mitotic Apparatus (NuMA) Protein." Journal of Cell Biology 145, no. 1 (April 5, 1999): 29–43. http://dx.doi.org/10.1083/jcb.145.1.29.
Повний текст джерелаNelapati, Anand Kumar, and JagadeeshBabu PonnanEttiyappan. "Computational Analysis of Therapeutic Enzyme Uricase from Different Source Organisms." Current Proteomics 17, no. 1 (January 6, 2020): 59–77. http://dx.doi.org/10.2174/1570164616666190617165107.
Повний текст джерелаMarceau, Normand, Anne Loranger, Stéphane Gilbert, Nathalie Daigle, and Serge Champetier. "Keratin-mediated resistance to stress and apoptosis in simple epithelial cells in relation to health and disease." Biochemistry and Cell Biology 79, no. 5 (October 1, 2001): 543–55. http://dx.doi.org/10.1139/o01-138.
Повний текст джерелаXu, Qi, Wenchen Gao, Shi-You Ding, Rina Kenig, Yuval Shoham, Edward A. Bayer, and Raphael Lamed. "The Cellulosome System of Acetivibrio cellulolyticus Includes a Novel Type of Adaptor Protein and a Cell Surface Anchoring Protein." Journal of Bacteriology 185, no. 15 (August 1, 2003): 4548–57. http://dx.doi.org/10.1128/jb.185.15.4548-4557.2003.
Повний текст джерелаMillson, Stefan H., Cara K. Vaughan, Chao Zhai, Maruf M. U. Ali, Barry Panaretou, Peter W. Piper, Laurence H. Pearl, and Chrisostomos Prodromou. "Chaperone ligand-discrimination by the TPR-domain protein Tah1." Biochemical Journal 413, no. 2 (June 26, 2008): 261–68. http://dx.doi.org/10.1042/bj20080105.
Повний текст джерелаGan, Yan-Fen, Ji-Xiang Yang, and Jun-Liu Zhong. "Video Surveillance Object Forgery Detection using PDCL Network with Residual-based Steganalysis Feature." International Journal of Intelligent Systems 2023 (June 20, 2023): 1–17. http://dx.doi.org/10.1155/2023/8378073.
Повний текст джерелаAkif, Mohd, Sylva L. Schwager, Colin S. Anthony, Bertrand Czarny, Fabrice Beau, Vincent Dive, Edward D. Sturrock, and K. Ravi Acharya. "Novel mechanism of inhibition of human angiotensin-I-converting enzyme (ACE) by a highly specific phosphinic tripeptide." Biochemical Journal 436, no. 1 (April 27, 2011): 53–59. http://dx.doi.org/10.1042/bj20102123.
Повний текст джерелаMencia-Trinchant, Nuria, Gail J. Roboz, Martin P. Carroll, Monica L. Guzman, and Duane C. Hassane. "Ultra-Deep Sequencing Defines Stem Cell-Specific Diversity Patterns in Acute Myelogenous Leukemia." Blood 124, no. 21 (December 6, 2014): 4790. http://dx.doi.org/10.1182/blood.v124.21.4790.4790.
Повний текст джерелаNimkar, Siddharth, and B. Anand. "Cas3/I-C mediated target DNA recognition and cleavage during CRISPR interference are independent of the composition and architecture of Cascade surveillance complex." Nucleic Acids Research 48, no. 5 (January 25, 2020): 2486–501. http://dx.doi.org/10.1093/nar/gkz1218.
Повний текст джерелаGehring, Clement, Masataro Asai, Rohan Chitnis, Tom Silver, Leslie Kaelbling, Shirin Sohrabi, and Michael Katz. "Reinforcement Learning for Classical Planning: Viewing Heuristics as Dense Reward Generators." Proceedings of the International Conference on Automated Planning and Scheduling 32 (June 13, 2022): 588–96. http://dx.doi.org/10.1609/icaps.v32i1.19846.
Повний текст джерелаEscors, David, Javier Ortego, Hubert Laude, and Luis Enjuanes. "The Membrane M Protein Carboxy Terminus Binds to Transmissible Gastroenteritis Coronavirus Core and Contributes to Core Stability." Journal of Virology 75, no. 3 (February 1, 2001): 1312–24. http://dx.doi.org/10.1128/jvi.75.3.1312-1324.2001.
Повний текст джерелаHernandez, Raquel, Davis Ferreira, Christine Sinodis, Katherine Litton, and Dennis T. Brown. "Single Amino Acid Insertions at the Junction of the Sindbis Virus E2 Transmembrane Domain and Endodomain Disrupt Virus Envelopment and Alter Infectivity." Journal of Virology 79, no. 12 (June 15, 2005): 7682–97. http://dx.doi.org/10.1128/jvi.79.12.7682-7697.2005.
Повний текст джерелаHuang, Peng, Cheryl A. Keller, Belinda Giardine, James O. J. Davies, Jim R. Hughes, Ross C. Hardison, and Gerd Blobel. "Comparison of Fetal and Adult Erythroid Chromosomal Architectures Identifies a Novel Fetal Hemoglobin Regulatory Region." Blood 130, Suppl_1 (December 7, 2017): 774. http://dx.doi.org/10.1182/blood.v130.suppl_1.774.774.
Повний текст джерелаEguchi, Raphael R., and Po-Ssu Huang. "Multi-scale structural analysis of proteins by deep semantic segmentation." Bioinformatics 36, no. 6 (August 19, 2019): 1740–49. http://dx.doi.org/10.1093/bioinformatics/btz650.
Повний текст джерелаGutierrez-Rodrigues, Fernanda, Sachiko Kajigaya, Xingmin Feng, Maria del Pilar Fernandez Ibanez, Marie J. Desierto, Keyvan Keyvanfar, Zejuan Li, et al. "Heterozygous RTEL1 variants in Patients with Bone Marrow Failure Associate with Telomere Dysfunction in the Absence of Telomere Shortening." Blood 128, no. 22 (December 2, 2016): 1044. http://dx.doi.org/10.1182/blood.v128.22.1044.1044.
Повний текст джерелаGunawardana, Dilantha. "An in silico Study of Two Transcription Factors Controlling Diazotrophic Fates of the Azolla Major Cyanobiont Trichormus azollae." Bioinformatics and Biology Insights 14 (January 2020): 117793222097749. http://dx.doi.org/10.1177/1177932220977490.
Повний текст джерелаWalton, Kendall, Tomasz J. Nawara, Allyson R. Angermeier, Hadley Rosengrant, Eunjoo Lee, Bridge Wynn, Ekaterina Victorova, George Belov, and Elizabeth Sztul. "Site-specific phosphorylations of the Arf activator GBF1 differentially regulate GBF1 function in Golgi homeostasis and secretion versus cytokinesis." Scientific Reports 13, no. 1 (August 21, 2023). http://dx.doi.org/10.1038/s41598-023-40705-5.
Повний текст джерелаYu, Jia, Guangshu Song, Weijun Guo, Liang Le, Fan Xu, Ting Wang, Fanhua Wang, Yue Wu, Xiaofeng Gu, and Li Pu. "ZmBELL10 interacts with other ZmBELLs and recognizes specific motifs for transcriptional activation to modulate internode patterning in maize." New Phytologist, August 15, 2023. http://dx.doi.org/10.1111/nph.19192.
Повний текст джерелаMalinverni, Duccio, Stefano Zamuner, Mathieu E. Rebeaud, Alessandro Barducci, Nadinath B. Nillegoda, and Paolo De Los Rios. "Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins." Proceedings of the National Academy of Sciences 120, no. 32 (July 31, 2023). http://dx.doi.org/10.1073/pnas.2218217120.
Повний текст джерелаZhou, Wei, Daniel Melamed, Gabor Banyai, Cindy Meyer, Thomas Tuschl, Marvin Wickens, Junyue Cao, and Stanley Fields. "Expanding the binding specificity for RNA recognition by a PUF domain." Nature Communications 12, no. 1 (August 24, 2021). http://dx.doi.org/10.1038/s41467-021-25433-6.
Повний текст джерелаYe, Ting-Juan, Kai-Fa Huang, Tzu-Ping Ko, and Shih-Hsiung Wu. "Synergic action of an inserted carbohydrate-binding module in a glycoside hydrolase family 5 endoglucanase." Acta Crystallographica Section D Structural Biology 78, no. 5 (April 20, 2022). http://dx.doi.org/10.1107/s2059798322002601.
Повний текст джерелаChen, Ke, Lili Ge, and Guorui Liu. "Integrated in silico–in vitro rational design of oncogenic EGFR-derived specific monoclonal antibody-binding peptide mimotopes." Journal of Bioinformatics and Computational Biology, April 27, 2023. http://dx.doi.org/10.1142/s0219720023500075.
Повний текст джерелаNishimura, Yoshifumi, and Masahiko Okuda. "Structural polymorphism of the PH domain in TFIIH." Bioscience Reports, June 21, 2023. http://dx.doi.org/10.1042/bsr20230846.
Повний текст джерелаMandali, Sridhar, and Reid C. Johnson. "Control of the serine integrase reaction: roles of the coiled-coil and helix E regions in DNA site synapsis and recombination." Journal of Bacteriology, June 2021. http://dx.doi.org/10.1128/jb.00703-20.
Повний текст джерелаPearson, Caroline R., Sarah N. Tindall, Reyme Herman, Huw T. Jenkins, Alex Bateman, Gavin H. Thomas, Jennifer R. Potts, and Marjan W. Van der Woude. "Acetylation of Surface Carbohydrates in Bacterial Pathogens Requires Coordinated Action of a Two-Domain Membrane-Bound Acyltransferase." mBio 11, no. 4 (August 25, 2020). http://dx.doi.org/10.1128/mbio.01364-20.
Повний текст джерелаHe, Guangxing, Jun Liu, Dong Liu, and Guijun Zhang. "GraphGPSM: a global scoring model for protein structure using graph neural networks." Briefings in Bioinformatics, June 14, 2023. http://dx.doi.org/10.1093/bib/bbad219.
Повний текст джерелаGomis-Rüth, F. Xavier, and Walter Stöcker. "Structural and evolutionary insights into astacin metallopeptidases." Frontiers in Molecular Biosciences 9 (January 4, 2023). http://dx.doi.org/10.3389/fmolb.2022.1080836.
Повний текст джерелаMoradali, M. Fata, Ivan Donati, Ian M. Sims, Shirin Ghods, and Bernd H. A. Rehm. "Alginate Polymerization and Modification Are Linked in Pseudomonas aeruginosa." mBio 6, no. 3 (May 12, 2015). http://dx.doi.org/10.1128/mbio.00453-15.
Повний текст джерелаDas, Samir, John Gilchrist, Frank Bosmans та Filip Van Petegem. "Binary architecture of the Nav1.2-β2 signaling complex". eLife 5 (19 лютого 2016). http://dx.doi.org/10.7554/elife.10960.
Повний текст джерелаBaskaran, Sulochanadevi, Lars-Anders Carlson, Goran Stjepanovic, Lindsey N. Young, Do Jin Kim, Patricia Grob, Robin E. Stanley, Eva Nogales, and James H. Hurley. "Architecture and dynamics of the autophagic phosphatidylinositol 3-kinase complex." eLife 3 (December 9, 2014). http://dx.doi.org/10.7554/elife.05115.
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