Статті в журналах з теми "Computational designing of HIV immunogens"
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Ahmed, Syed Faraz, Ahmed A. Quadeer, David Morales-Jimenez, and Matthew R. McKay. "Sub-dominant principal components inform new vaccine targets for HIV Gag." Bioinformatics 35, no. 20 (June 28, 2019): 3884–89. http://dx.doi.org/10.1093/bioinformatics/btz524.
Повний текст джерелаJiang, Xunqing, Max Totrov, Wei Li, Jared M. Sampson, Constance Williams, Hong Lu, Xueling Wu, et al. "Rationally Designed Immunogens Targeting HIV-1 gp120 V1V2 Induce Distinct Conformation-Specific Antibody Responses in Rabbits." Journal of Virology 90, no. 24 (October 5, 2016): 11007–19. http://dx.doi.org/10.1128/jvi.01409-16.
Повний текст джерелаDeLaitsch, Andrew T., Nathaniel Liendo, and Pamela J. Bjorkman. "Designing occluded-open Env-based immunogens for HIV-1." Biophysical Journal 122, no. 3 (February 2023): 472a. http://dx.doi.org/10.1016/j.bpj.2022.11.2532.
Повний текст джерелаMoyo, Nathifa, Edmund G. Wee, Bette Korber, Kapil Bahl, Samantha Falcone, Sunny Himansu, Adrianne L. Wong, Antu K. Dey, Mark Feinberg, and Tomáš Hanke. "Tetravalent Immunogen Assembled from Conserved Regions of HIV-1 and Delivered as mRNA Demonstrates Potent Preclinical T-Cell Immunogenicity and Breadth." Vaccines 8, no. 3 (July 6, 2020): 360. http://dx.doi.org/10.3390/vaccines8030360.
Повний текст джерелаLin, George, and Peter Nara. "Designing Immunogens to Elicit Broadly Neutralizing Antibodies to the HIV-1 Envelope Glycoprotein." Current HIV Research 5, no. 6 (November 1, 2007): 514–41. http://dx.doi.org/10.2174/157016207782418489.
Повний текст джерелаDas, Supratik, Rajesh Kumar, Shubbir Ahmed, Hilal Ahmad Parray, and Sweety Samal. "Efficiently cleaved HIV-1 envelopes: can they be important for vaccine immunogen development?" Therapeutic Advances in Vaccines and Immunotherapy 8 (January 2020): 251513552095776. http://dx.doi.org/10.1177/2515135520957763.
Повний текст джерелаMehandru, Saurabh, Terri Wrin, Justin Galovich, Gabriela Stiegler, Brigitta Vcelar, Arlene Hurley, Christine Hogan, et al. "Neutralization Profiles of Newly Transmitted Human Immunodeficiency Virus Type 1 by Monoclonal Antibodies 2G12, 2F5, and 4E10." Journal of Virology 78, no. 24 (December 15, 2004): 14039–42. http://dx.doi.org/10.1128/jvi.78.24.14039-14042.2004.
Повний текст джерелаNabel, Gary J., Peter D. Kwong, and John R. Mascola. "Progress in the rational design of an AIDS vaccine." Philosophical Transactions of the Royal Society B: Biological Sciences 366, no. 1579 (October 12, 2011): 2759–65. http://dx.doi.org/10.1098/rstb.2011.0096.
Повний текст джерелаIroegbu, Johanna, Markus Birk, Una Lazdina, Anders Sönnerborg, and Matti Sällberg. "Variability and Immunogenicity of Human Immunodeficiency Virus Type 1 p24 Gene Quasispecies." Clinical Diagnostic Laboratory Immunology 7, no. 3 (May 1, 2000): 377–83. http://dx.doi.org/10.1128/cdli.7.3.377-383.2000.
Повний текст джерелаSwanson, Olivia, Joshua S. Martin Beem, Brianna Rhodes, Avivah Wang, Maggie Barr, Haiyan Chen, Robert Parks, et al. "Identification of CDRH3 loops in the B cell receptor repertoire that can be engaged by candidate immunogens." PLOS Pathogens 19, no. 5 (May 17, 2023): e1011401. http://dx.doi.org/10.1371/journal.ppat.1011401.
Повний текст джерелаSanou, Missa P., Anne S. De Groot, Michael Murphey-Corb, Jay A. Levy, and Janet K. Yamamoto. "HIV-1 Vaccine Trials: Evolving Concepts and Designs." Open AIDS Journal 6, no. 1 (November 30, 2012): 274–88. http://dx.doi.org/10.2174/1874613601206010274.
Повний текст джерелаChan-hui, Po-Ying, Terri Wrin, Melissa Simek, Sanjay Phogat, Ole Olsen, Phil Hammond, Pascal Poignard, et al. "Isolation of Cross-Clade HIV-Neutralizing Human Antibodies from Memory B Cell Repertoires Using Short Term Culture and High-Throughput Primary Neutralization Screens (38.17)." Journal of Immunology 184, no. 1_Supplement (April 1, 2010): 38.17. http://dx.doi.org/10.4049/jimmunol.184.supp.38.17.
Повний текст джерелаKumar, Rajnish, Ruimin Pan, Chitra Upadhyay, Luzia Mayr, Sandra Cohen, Xiao-Hong Wang, Preetha Balasubramanian, et al. "Functional and Structural Characterization of Human V3-Specific Monoclonal Antibody 2424 with Neutralizing Activity against HIV-1 JRFL." Journal of Virology 89, no. 17 (June 24, 2015): 9090–102. http://dx.doi.org/10.1128/jvi.01280-15.
Повний текст джерелаAcharya, Priyamvada, Robert Edwards, Rory Henderson, Kartik Manne, Katayoun Mansouri, Katarzyna Janowska, Shana McDowell, Victoria Stalls, Megan Kopp, and Barton Haynes. "How Does HIV Env Structure Informs Vaccine Design?" Microscopy and Microanalysis 26, S2 (July 30, 2020): 574–75. http://dx.doi.org/10.1017/s1431927620015135.
Повний текст джерелаCain, Derek Wilson, Ming Tian, Torben Schiffner, Kimmo Rantalainen, Kevin O. Saunders, Kevin Wiehe, Brian Watts, et al. "Immunogenicity of a germline-targeting nanoparticle in knock-in mice expressing human B cell receptors of the HIV gp41 neutralizing antibody, DH511." Journal of Immunology 208, no. 1_Supplement (May 1, 2022): 64.22. http://dx.doi.org/10.4049/jimmunol.208.supp.64.22.
Повний текст джерелаLin, George, Andrea Bertolotti-Ciarlet, Beth Haggarty, Josephine Romano, Katrina M. Nolan, George J. Leslie, Andrea P. O. Jordan, et al. "Replication-Competent Variants of Human Immunodeficiency Virus Type 2 Lacking the V3 Loop Exhibit Resistance to Chemokine Receptor Antagonists." Journal of Virology 81, no. 18 (July 3, 2007): 9956–66. http://dx.doi.org/10.1128/jvi.00385-07.
Повний текст джерелаLouie, Raymond H. Y., Kevin J. Kaczorowski, John P. Barton, Arup K. Chakraborty, and Matthew R. McKay. "Fitness landscape of the human immunodeficiency virus envelope protein that is targeted by antibodies." Proceedings of the National Academy of Sciences 115, no. 4 (January 8, 2018): E564—E573. http://dx.doi.org/10.1073/pnas.1717765115.
Повний текст джерелаGeraghty, Daniel, Jodie P. Gooodridge, Kevin Wang, Aura Burian, John McNevin, Margaret J. McElrath, and Ni Lee. "HLA-F and MHC open conformers in a novel HIV-1 immunization strategy." Journal of Immunology 196, no. 1_Supplement (May 1, 2016): 116.10. http://dx.doi.org/10.4049/jimmunol.196.supp.116.10.
Повний текст джерелаDar, Khalid Bashir, Aashiq Hussain Bhat, Shajrul Amin, Rabia Hamid, Suhail Anees, Syed Anjum, Bilal Ahmad Reshi, Mohammad Afzal Zargar, Akbar Masood, and Showkat Ahmad Ganie. "Modern Computational Strategies for Designing Drugs to Curb Human Diseases: A Prospect." Current Topics in Medicinal Chemistry 18, no. 31 (February 22, 2019): 2702–19. http://dx.doi.org/10.2174/1568026619666190119150741.
Повний текст джерелаGeraghty, Daniel, Kevin L. Wang, Ni Lee, Aura Burian, Jodie P. Goodridge, Akiko Ishitani, John McNevin, and Margaret J. McElrath. "HLA-F and MHC open conformers cooperate in antigen presentation during the inflammatory response." Journal of Immunology 198, no. 1_Supplement (May 1, 2017): 146.13. http://dx.doi.org/10.4049/jimmunol.198.supp.146.13.
Повний текст джерелаBAO, JU, JIN F. LIU, XIAO HE, and JOHN Z. H. ZHANG. "COMPUTATIONAL STUDY OF HIV-1 gp41 NHR TRIMER: INHIBITION MECHANISMS OF N-SUBSTITUTED PYRROLE DERIVATIVES AND FRAGMENT-BASED VIRTUAL SCREENING." Journal of Theoretical and Computational Chemistry 12, no. 08 (December 2013): 1341001. http://dx.doi.org/10.1142/s0219633613410010.
Повний текст джерелаElalouf, Amir. "In-silico Structural Modeling of Human Immunodeficiency Virus Proteins." Biomedical Engineering and Computational Biology 14 (January 2023): 117959722311544. http://dx.doi.org/10.1177/11795972231154402.
Повний текст джерелаWu, Xueling, Tongqing Zhou, Sijy O'Dell, Richard T. Wyatt, Peter D. Kwong, and John R. Mascola. "Mechanism of Human Immunodeficiency Virus Type 1 Resistance to Monoclonal Antibody b12 That Effectively Targets the Site of CD4 Attachment." Journal of Virology 83, no. 21 (August 19, 2009): 10892–907. http://dx.doi.org/10.1128/jvi.01142-09.
Повний текст джерелаAhmad, Ashfaq, Rashid Ali, Ijaz Ahmad, Fuad A. Awwad, and Emad A. A. Ismail. "Global Stability of Fractional Order HIV/AIDS Epidemic Model under Caputo Operator and Its Computational Modeling." Fractal and Fractional 7, no. 9 (August 23, 2023): 643. http://dx.doi.org/10.3390/fractalfract7090643.
Повний текст джерелаEdwards, Terri G., Trevor L. Hoffman, Frédéric Baribaud, Stéphanie Wyss, Celia C. LaBranche, Josephine Romano, Joshua Adkinson, Matthew Sharron, James A. Hoxie, and Robert W. Doms. "Relationships between CD4 Independence, Neutralization Sensitivity, and Exposure of a CD4-Induced Epitope in a Human Immunodeficiency Virus Type 1 Envelope Protein." Journal of Virology 75, no. 11 (June 1, 2001): 5230–39. http://dx.doi.org/10.1128/jvi.75.11.5230-5239.2001.
Повний текст джерелаWelbourn, Sarah, Srirupa Chakraborty, Jie E. Yang, Anne S. Gleinich, Sailaja Gangadhara, Salar Khan, Courtney Ferrebee, et al. "A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence." PLOS Pathogens 18, no. 5 (May 3, 2022): e1010488. http://dx.doi.org/10.1371/journal.ppat.1010488.
Повний текст джерелаBaassi, Mouna, Mohamed Moussaoui, Hatim Soufi, Sanchaita Rajkhowa, Ashwani Sharma, Subrata Sinha, and Said Belaaouad. "Towards designing of a potential new HIV-1 protease inhibitor using QSAR study in combination with Molecular docking and Molecular dynamics simulations." PLOS ONE 18, no. 4 (April 20, 2023): e0284539. http://dx.doi.org/10.1371/journal.pone.0284539.
Повний текст джерелаMeuser, Megan, Michael Murphy, Adel Rashad, and Simon Cocklin. "Kinetic Characterization of Novel HIV-1 Entry Inhibitors: Discovery of a Relationship between Off-Rate and Potency." Molecules 23, no. 8 (August 3, 2018): 1940. http://dx.doi.org/10.3390/molecules23081940.
Повний текст джерелаMeuser, Megan E., Michael B. Murphy, Adel A. Rashad, and Simon Cocklin. "Kinetic Characterization of Novel HIV-1 Entry Inhibitors: Discovery of a Relationship between Off-Rate and Potency." Proceedings 22, no. 1 (August 15, 2019): 77. http://dx.doi.org/10.3390/proceedings2019022077.
Повний текст джерелаLee, Tae Jin, Jose A. Vazquez, and Arni S. R. Srinivasa Rao. "Mathematical modeling of impact of eCD4-Ig molecule in control and management of HIV within a host." Mathematical Biosciences and Engineering 18, no. 5 (2021): 6887–906. http://dx.doi.org/10.3934/mbe.2021342.
Повний текст джерелаWang, Yueping, Jie Chang, Jiangyuan Wang, Peng Zhong, Yufang Zhang, Christopher Cong Lai, and Yanping He. "3D-QSAR Studies of S-DABO Derivatives as Non-nucleoside HIV-1 Reverse Transcriptase Inhibitors." Letters in Drug Design & Discovery 16, no. 8 (August 8, 2019): 868–81. http://dx.doi.org/10.2174/1570180815666180810112321.
Повний текст джерелаBirse, Kenzie, Kelly B. Arnold, Richard M. Novak, Stuart McCorrister, Souradet Shaw, Garrett R. Westmacott, Terry B. Ball, Douglas A. Lauffenburger, and Adam Burgener. "Molecular Signatures of Immune Activation and Epithelial Barrier Remodeling Are Enhanced during the Luteal Phase of the Menstrual Cycle: Implications for HIV Susceptibility." Journal of Virology 89, no. 17 (June 17, 2015): 8793–805. http://dx.doi.org/10.1128/jvi.00756-15.
Повний текст джерелаBarukab, Omar, Farman Ali, and Sher Afzal Khan. "DBP-GAPred: An intelligent method for prediction of DNA-binding proteins types by enhanced evolutionary profile features with ensemble learning." Journal of Bioinformatics and Computational Biology 19, no. 04 (July 21, 2021): 2150018. http://dx.doi.org/10.1142/s0219720021500189.
Повний текст джерелаKarthic, Anandakrishnan, Veerbhan Kesarwani, Rahul Kunwar Singh, Pavan Kumar Yadav, Navaneet Chaturvedi, Pallavi Chauhan, Brijesh Singh Yadav, and Sandeep Kumar Kushwaha. "Computational Analysis Reveals Monomethylated Triazolopyrimidine as a Novel Inhibitor of SARS-CoV-2 RNA-Dependent RNA Polymerase (RdRp)." Molecules 27, no. 3 (January 26, 2022): 801. http://dx.doi.org/10.3390/molecules27030801.
Повний текст джерелаSaha, Ananya, and Narendra M. Dixit. "Pre-existing resistance in the latent reservoir can compromise VRC01 therapy during chronic HIV-1 infection." PLOS Computational Biology 16, no. 11 (November 30, 2020): e1008434. http://dx.doi.org/10.1371/journal.pcbi.1008434.
Повний текст джерелаYang, Yuhe R., Laura E. McCoy, Marit J. van Gils, Raiees Andrabi, Hannah L. Turner, Meng Yuan, Christopher A. Cottrell, et al. "Autologous Antibody Responses to an HIV Envelope Glycan Hole Are Not Easily Broadened in Rabbits." Journal of Virology 94, no. 7 (January 15, 2020). http://dx.doi.org/10.1128/jvi.01861-19.
Повний текст джерелаPande, Prajakt P. "Computational Approach Towards Designing Potential HIV Inhibitors." Journal of Antivirals & Antiretrovirals 01, no. 02 (2010). http://dx.doi.org/10.4172/jaa.1000012.
Повний текст джерелаPowell, Rebecca L., Svenja Weiss, Alisa Fox, Xiaomei Liu, Vincenza Itri, Xunqing Jiang, Christina C. Luo, et al. "An HIV Vaccine Targeting the V2 Region of the HIV Envelope Induces a Highly Durable Polyfunctional Fc-Mediated Antibody Response in Rhesus Macaques." Journal of Virology 94, no. 17 (June 17, 2020). http://dx.doi.org/10.1128/jvi.01175-20.
Повний текст джерелаBurton, Samantha, Lori M. Spicer, Tysheena P. Charles, Sailaja Gangadhara, Pradeep B. J. Reddy, Tiffany M. Styles, Vijayakumar Velu, et al. "Clade C HIV-1 Envelope Vaccination Regimens Differ in Their Ability To Elicit Antibodies with Moderate Neutralization Breadth against Genetically Diverse Tier 2 HIV-1 Envelope Variants." Journal of Virology 93, no. 7 (January 16, 2019). http://dx.doi.org/10.1128/jvi.01846-18.
Повний текст джерелаSher, Hamza, Hafsa Sharif, Tahreem Zaheer, Sarmad Ahmad Khan, Amjad Ali, Hasnain Javed, and Aneela Javed. "Employing computational tools to design a multi-epitope vaccine targeting human immunodeficiency virus-1 (HIV-1)." BMC Genomics 24, no. 1 (May 24, 2023). http://dx.doi.org/10.1186/s12864-023-09330-4.
Повний текст джерелаChe, Ye, Alexey V. Gribenko, Xi Song, Luke D. Handke, Kari S. Efferen, Kristin Tompkins, Srinivas Kodali, et al. "Rational Design of a Highly Immunogenic Prefusion-Stabilized F Glycoprotein Antigen for a Respiratory Syncytial Virus Vaccine." Science Translational Medicine, April 6, 2023. http://dx.doi.org/10.1126/scitranslmed.ade6422.
Повний текст джерелаMalherbe, Delphine C., Jason Mendy, Lo Vang, Philip T. Barnette, Jason Reed, Samir K. Lakhashe, Joshua Owuor, et al. "Combination Adenovirus and Protein Vaccines Prevent Infection or Reduce Viral Burden after Heterologous Clade C Simian-Human Immunodeficiency Virus Mucosal Challenge." Journal of Virology 92, no. 2 (November 1, 2017). http://dx.doi.org/10.1128/jvi.01092-17.
Повний текст джерелаYang, Fengyuan, Jingyi Yang, Zhao Zhang, Gao Tu, Xiaojun Yao, Weiwei Xue, and Feng Zhu. "Recent Advances in Computer-aided Antiviral Drug Design Targeting HIV-1 Integrase and Reverse Transcriptase Associated Ribonuclease H." Current Medicinal Chemistry 28 (July 8, 2021). http://dx.doi.org/10.2174/0929867328666210708090123.
Повний текст джерелаLi, Zhenfeng, Lun Hu, Zehai Tang, and Cheng Zhao. "Predicting HIV-1 Protease Cleavage Sites With Positive-Unlabeled Learning." Frontiers in Genetics 12 (March 26, 2021). http://dx.doi.org/10.3389/fgene.2021.658078.
Повний текст джерелаMalherbe, Delphine C., Lo Vang, Jason Mendy, Philip T. Barnette, David A. Spencer, Jason Reed, Bettie W. Kareko, et al. "Modified Adenovirus Prime-Protein Boost Clade C HIV Vaccine Strategy Results in Reduced Viral DNA in Blood and Tissues Following Tier 2 SHIV Challenge." Frontiers in Immunology 11 (February 15, 2021). http://dx.doi.org/10.3389/fimmu.2020.626464.
Повний текст джерелаBag, Arijit. "DFT based computational methodology of IC50 prediction." Current Computer-Aided Drug Design 16 (February 19, 2020). http://dx.doi.org/10.2174/1573409916666200219115112.
Повний текст джерелаPan, Ruimin, Yali Qin, Marisa Banasik, William Lees, Adrian J. Shepherd, Michael W. Cho, and Xiang-Peng Kong. "Increased Epitope Complexity Correlated with Antibody Affinity Maturation and a Novel Binding Mode Revealed by Structures of Rabbit Antibodies against the Third Variable Loop (V3) of HIV-1 gp120." Journal of Virology 92, no. 7 (January 17, 2018). http://dx.doi.org/10.1128/jvi.01894-17.
Повний текст джерелаAl-Kubati, Anwar A. G., Mahmoud Kandeel, Jamal Hussen, Maged Gomaa Hemida, and Abdullah I. A. Al-Mubarak. "Immunoinformatic prediction of the pathogenicity of bovine viral diarrhea virus genotypes: implications for viral virulence determinants, designing novel diagnostic assays and vaccines development." Frontiers in Veterinary Science 10 (July 6, 2023). http://dx.doi.org/10.3389/fvets.2023.1130147.
Повний текст джерелаKumar, Sanjay, Geethu S. Kumar, Subhrangsu Sundar Maitra, Petr Malý, Shiv Bharadwaj, Pradeep Sharma, and Vivek Dhar Dwivedi. "Viral informatics: bioinformatics-based solution for managing viral infections." Briefings in Bioinformatics, August 10, 2022. http://dx.doi.org/10.1093/bib/bbac326.
Повний текст джерелаWaqas, Muhammad, Shahkaar Aziz, Pietro Liò, Yumna Khan, Amjad Ali, Aqib Iqbal, Faizullah Khan, and Fahad Nasser Almajhdi. "Immunoinformatics design of multivalent epitope vaccine against monkeypox virus and its variants using membrane-bound, enveloped, and extracellular proteins as targets." Frontiers in Immunology 14 (January 26, 2023). http://dx.doi.org/10.3389/fimmu.2023.1091941.
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