Статті в журналах з теми "Algorithms- Protein"
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Hulianytskyi, Leonid, and Sergii Chornozhuk. "Genetic Algorithm with New Stochastic Greedy Crossover Operator for Protein Structure Folding Problem." Cybernetics and Computer Technologies, no. 2 (July 24, 2020): 19–29. http://dx.doi.org/10.34229/2707-451x.20.2.3.
Повний текст джерелаCavanaugh, David, and Krishnan Chittur. "A hydrophobic proclivity index for protein alignments." F1000Research 4 (October 21, 2015): 1097. http://dx.doi.org/10.12688/f1000research.6348.1.
Повний текст джерелаCavanaugh, David, and Krishnan Chittur. "A hydrophobic proclivity index for protein alignments." F1000Research 4 (October 15, 2020): 1097. http://dx.doi.org/10.12688/f1000research.6348.2.
Повний текст джерелаBegleiter, R., R. El-Yaniv, and G. Yona. "On Prediction Using Variable Order Markov Models." Journal of Artificial Intelligence Research 22 (December 1, 2004): 385–421. http://dx.doi.org/10.1613/jair.1491.
Повний текст джерелаMoschopoulos, Charalampos, Grigorios Beligiannis, Spiridon Likothanassis, and Sophia Kossida. "Using a Genetic Algorithm and Markov Clustering on Protein–Protein Interaction Graphs." International Journal of Systems Biology and Biomedical Technologies 1, no. 2 (April 2012): 35–47. http://dx.doi.org/10.4018/ijsbbt.2012040103.
Повний текст джерелаWang, Derui, and Jingyu Hou. "Explore the hidden treasure in protein–protein interaction networks — An iterative model for predicting protein functions." Journal of Bioinformatics and Computational Biology 13, no. 05 (October 2015): 1550026. http://dx.doi.org/10.1142/s0219720015500262.
Повний текст джерелаDandekar, Thomas, and Patrick Argos. "Potential of genetic algorithms in protein folding and protein engineering simulations." "Protein Engineering, Design and Selection" 5, no. 7 (1992): 637–45. http://dx.doi.org/10.1093/protein/5.7.637.
Повний текст джерелаGainza, Pablo, Hunter M. Nisonoff, and Bruce R. Donald. "Algorithms for protein design." Current Opinion in Structural Biology 39 (August 2016): 16–26. http://dx.doi.org/10.1016/j.sbi.2016.03.006.
Повний текст джерелаBrown, Michael Scott, Tommy Bennett, and James A. Coker. "Niche Genetic Algorithms are better than traditional Genetic Algorithms for de novo Protein Folding." F1000Research 3 (October 7, 2014): 236. http://dx.doi.org/10.12688/f1000research.5412.1.
Повний текст джерелаKhatami, Mohammad Hassan, Udson C. Mendes, Nathan Wiebe, and Philip M. Kim. "Gate-based quantum computing for protein design." PLOS Computational Biology 19, no. 4 (April 12, 2023): e1011033. http://dx.doi.org/10.1371/journal.pcbi.1011033.
Повний текст джерелаLappe, M., and L. Holm. "Algorithms for protein interaction networks." Biochemical Society Transactions 33, no. 3 (June 1, 2005): 530–34. http://dx.doi.org/10.1042/bst0330530.
Повний текст джерелаShirmohammady, Naeem, Habib Izadkhah, and Ayaz Isazadeh. "PPI-GA: A Novel Clustering Algorithm to Identify Protein Complexes within Protein-Protein Interaction Networks Using Genetic Algorithm." Complexity 2021 (March 25, 2021): 1–14. http://dx.doi.org/10.1155/2021/2132516.
Повний текст джерелаDERONNE, KEVIN W., and GEORGE KARYPIS. "EFFECTIVE OPTIMIZATION ALGORITHMS FOR FRAGMENT-ASSEMBLY BASED PROTEIN STRUCTURE PREDICTION." Journal of Bioinformatics and Computational Biology 05, no. 02a (April 2007): 335–52. http://dx.doi.org/10.1142/s0219720007002618.
Повний текст джерелаCHUA, HON NIAN, KANG NING, WING-KIN SUNG, HON WAI LEONG, and LIMSOON WONG. "USING INDIRECT PROTEIN–PROTEIN INTERACTIONS FOR PROTEIN COMPLEX PREDICTION." Journal of Bioinformatics and Computational Biology 06, no. 03 (June 2008): 435–66. http://dx.doi.org/10.1142/s0219720008003497.
Повний текст джерелаRuiz Echartea, Maria Elisa, Isaure Chauvot de Beauchêne, and David W. Ritchie. "EROS-DOCK: protein–protein docking using exhaustive branch-and-bound rotational search." Bioinformatics 35, no. 23 (May 24, 2019): 5003–10. http://dx.doi.org/10.1093/bioinformatics/btz434.
Повний текст джерелаDunham, Brandan, and Madhavi K. Ganapathiraju. "Benchmark Evaluation of Protein–Protein Interaction Prediction Algorithms." Molecules 27, no. 1 (December 22, 2021): 41. http://dx.doi.org/10.3390/molecules27010041.
Повний текст джерелаVreven, Thom, Howook Hwang, and Zhiping Weng. "Exploring Angular Distance in Protein-Protein Docking Algorithms." PLoS ONE 8, no. 2 (February 21, 2013): e56645. http://dx.doi.org/10.1371/journal.pone.0056645.
Повний текст джерелаHallen, Mark A., and Bruce R. Donald. "Protein design by provable algorithms." Communications of the ACM 62, no. 10 (September 24, 2019): 76–84. http://dx.doi.org/10.1145/3338124.
Повний текст джерелаArriagada, Mauricio, and Aleksandar Poleksic. "On the Difference in Quality between Current Heuristic and Optimal Solutions to the Protein Structure Alignment Problem." BioMed Research International 2013 (2013): 1–8. http://dx.doi.org/10.1155/2013/459248.
Повний текст джерелаSánchez-Hernández, Juan P., Juan Frausto-Solís, Juan J. González-Barbosa, Diego A. Soto-Monterrubio, Fanny G. Maldonado-Nava, and Guadalupe Castilla-Valdez. "A Peptides Prediction Methodology for Tertiary Structure Based on Simulated Annealing." Mathematical and Computational Applications 26, no. 2 (April 29, 2021): 39. http://dx.doi.org/10.3390/mca26020039.
Повний текст джерелаSOHAEE, NASSIM, and CHRISTIAN V. FORST. "IDENTIFICATION OF FUNCTIONAL MODULES IN A PPI NETWORK BY BOUNDED DIAMETER CLUSTERING." Journal of Bioinformatics and Computational Biology 08, no. 06 (December 2010): 929–43. http://dx.doi.org/10.1142/s0219720010005221.
Повний текст джерелаWang, Fengjuan, Cheng Xu, Shufeng Jiang, and Fengxia Xu. "Application of improved intelligent ant colony algorithm in protein folding prediction." Journal of Algorithms & Computational Technology 14 (January 2020): 174830262094141. http://dx.doi.org/10.1177/1748302620941411.
Повний текст джерелаKumar, Ashish, Roheet Bhatnagar, Sumit Srivastava, and Arjun Chauhan. "Comparative Prediction of Wine Quality and Protein Synthesis Using ARSkNN." International Journal of Information Technology Project Management 11, no. 4 (October 2020): 31–41. http://dx.doi.org/10.4018/ijitpm.2020100103.
Повний текст джерелаWu, Hongjie, Haiou Li, Min Jiang, Cheng Chen, Qiang Lv, and Chuang Wu. "Identify High-Quality Protein Structural Models by EnhancedK-Means." BioMed Research International 2017 (2017): 1–9. http://dx.doi.org/10.1155/2017/7294519.
Повний текст джерелаYE, JIEPING, RAVI JANARDAN, and SONGTAO LIU. "PAIRWISE PROTEIN STRUCTURE ALIGNMENT BASED ON AN ORIENTATION-INDEPENDENT BACKBONE REPRESENTATION." Journal of Bioinformatics and Computational Biology 02, no. 04 (December 2004): 699–717. http://dx.doi.org/10.1142/s021972000400082x.
Повний текст джерелаKotelnikova, Ekaterina, Klaus M. Frahm, Dima L. Shepelyansky, and Oksana Kunduzova. "Fibrosis Protein-Protein Interactions from Google Matrix Analysis of MetaCore Network." International Journal of Molecular Sciences 23, no. 1 (December 22, 2021): 67. http://dx.doi.org/10.3390/ijms23010067.
Повний текст джерелаWesthead, D. R., V. P. Collura, M. D. Eldridge, M. A. Firth, J. Li, and C. W. Murray. "Protein fold recognition by threading: comparison of algorithms and analysis of results." "Protein Engineering, Design and Selection" 8, no. 12 (1995): 1197–204. http://dx.doi.org/10.1093/protein/8.12.1197.
Повний текст джерелаDUKKA BAHADUR, K. C., ETSUJI TOMITA, JUN'ICHI SUZUKI, and TATSUYA AKUTSU. "PROTEIN SIDE-CHAIN PACKING PROBLEM: A MAXIMUM EDGE-WEIGHT CLIQUE ALGORITHMIC APPROACH." Journal of Bioinformatics and Computational Biology 03, no. 01 (February 2005): 103–26. http://dx.doi.org/10.1142/s0219720005000904.
Повний текст джерелаLin, Guohui, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, and Ying Xu. "Computational Assignment of Protein Backbone NMR Peaks by Efficient Bounding and Filtering." Journal of Bioinformatics and Computational Biology 01, no. 02 (July 2003): 387–409. http://dx.doi.org/10.1142/s0219720003000083.
Повний текст джерелаSunny, Sharon, and P. B. Jayaraj. "A Geometric Complementarity-Based Tool for Protein–Protein Docking." Journal of Computational Biophysics and Chemistry 21, no. 01 (December 9, 2021): 35–46. http://dx.doi.org/10.1142/s273741652250003x.
Повний текст джерелаLo, Victor L., Richard L. Kingston, and Rick P. Millane. "Iterative projection algorithms in protein crystallography. II. Application." Acta Crystallographica Section A Foundations and Advances 71, no. 4 (June 6, 2015): 451–59. http://dx.doi.org/10.1107/s2053273315005574.
Повний текст джерелаPatrick, W. M., A. E. Firth, and J. M. Blackburn. "User-friendly algorithms for estimating completeness and diversity in randomized protein-encoding libraries." Protein Engineering Design and Selection 16, no. 6 (June 1, 2003): 451–57. http://dx.doi.org/10.1093/protein/gzg057.
Повний текст джерелаShen, Li, Jian Zhang, Fang Wang, and Kai Liu. "Predicting Essential Proteins Based on Integration of Local Fuzzy Fractal Dimension and Subcellular Location Information." Genes 13, no. 2 (January 19, 2022): 173. http://dx.doi.org/10.3390/genes13020173.
Повний текст джерелаHuang, Chien-Hung, Huai-Shun Peng, and Ka-Lok Ng. "Prediction of Cancer Proteins by Integrating Protein Interaction, Domain Frequency, and Domain Interaction Data Using Machine Learning Algorithms." BioMed Research International 2015 (2015): 1–15. http://dx.doi.org/10.1155/2015/312047.
Повний текст джерелаHelles, Glennie. "A comparative study of the reported performance of ab initio protein structure prediction algorithms." Journal of The Royal Society Interface 5, no. 21 (December 11, 2007): 387–96. http://dx.doi.org/10.1098/rsif.2007.1278.
Повний текст джерелаHung, Che-Lun, and Yaw-Ling Lin. "Implementation of a Parallel Protein Structure Alignment Service on Cloud." International Journal of Genomics 2013 (2013): 1–8. http://dx.doi.org/10.1155/2013/439681.
Повний текст джерелаBERGER, BONNIE. "Algorithms for Protein Structural Motif Recognition." Journal of Computational Biology 2, no. 1 (January 1995): 125–38. http://dx.doi.org/10.1089/cmb.1995.2.125.
Повний текст джерелаCherfils, Jacqueline, and Joël Janin. "Protein docking algorithms: simulating molecular recognition." Current Opinion in Structural Biology 3, no. 2 (April 1993): 265–69. http://dx.doi.org/10.1016/s0959-440x(05)80162-9.
Повний текст джерелаPedersen, Jan T., and John Moult. "Genetic algorithms for protein structure prediction." Current Opinion in Structural Biology 6, no. 2 (April 1996): 227–31. http://dx.doi.org/10.1016/s0959-440x(96)80079-0.
Повний текст джерелаPoleksic, Aleksandar. "Algorithms for optimal protein structure alignment." Bioinformatics 25, no. 21 (September 4, 2009): 2751–56. http://dx.doi.org/10.1093/bioinformatics/btp530.
Повний текст джерелаUnger, Ron, and John Moult. "Genetic Algorithms for Protein Folding Simulations." Journal of Molecular Biology 231, no. 1 (May 1993): 75–81. http://dx.doi.org/10.1006/jmbi.1993.1258.
Повний текст джерелаOakley, Aaron J. "Hidden Glutathione Transferases in the Human Genome." Biomolecules 13, no. 8 (August 12, 2023): 1240. http://dx.doi.org/10.3390/biom13081240.
Повний текст джерелаCaliandro, Rocco, Benedetta Carrozzini, Giovanni Luca Cascarano, Giuliana Comunale, Carmelo Giacovazzo, and Annamaria Mazzone. "Protein phasing at non-atomic resolution by combining Patterson andVLDtechniques." Acta Crystallographica Section D Biological Crystallography 70, no. 7 (June 29, 2014): 1994–2006. http://dx.doi.org/10.1107/s139900471401013x.
Повний текст джерелаKumar, Nilesh, and M. Shahid Mukhtar. "Ranking Plant Network Nodes Based on Their Centrality Measures." Entropy 25, no. 4 (April 18, 2023): 676. http://dx.doi.org/10.3390/e25040676.
Повний текст джерелаLiang, Zhengping, Rui Guo, Jiangtao Sun, Zhong Ming, and Zexuan Zhu. "Orderly Roulette Selection Based Ant Colony Algorithm for Hierarchical Multilabel Protein Function Prediction." Mathematical Problems in Engineering 2017 (2017): 1–15. http://dx.doi.org/10.1155/2017/6320273.
Повний текст джерелаZahiri, Javad, Joseph Bozorgmehr, and Ali Masoudi-Nejad. "Computational Prediction of Protein–Protein Interaction Networks: Algorithms and Resources." Current Genomics 14, no. 6 (September 1, 2013): 397–414. http://dx.doi.org/10.2174/1389202911314060004.
Повний текст джерелаCHANG, DARBY TIEN-HAO, JUNG-HSIN LIN, CHIH-HUNG HSIEH, and YEN-JENG OYANG. "ON THE DESIGN OF OPTIMIZATION ALGORITHMS FOR PREDICTION OF MOLECULAR INTERACTIONS." International Journal on Artificial Intelligence Tools 19, no. 03 (June 2010): 267–80. http://dx.doi.org/10.1142/s0218213010000182.
Повний текст джерелаAl-hussaniy, Hany Akeel. "The development of molecular docking and molecular dynamics and their application in the field of chemistry and computer simulation." Journal of medical pharmaceutical and allied sciences 12, no. 1 (January 31, 2023): 5552–62. http://dx.doi.org/10.55522/jmpas.v12i1.4137.
Повний текст джерелаSerackis, Artūras, Dalius Matuzevičius, Dalius Navakauskas, Eldar Šabanovič, Andrius Katkevičius, and Darius Plonis. "A Robust Identification of the Protein Standard Bands in Two-Dimensional Electrophoresis Gel Images." Electrical, Control and Communication Engineering 13, no. 1 (December 1, 2017): 63–68. http://dx.doi.org/10.1515/ecce-2017-0009.
Повний текст джерелаMin, Seonwoo, HyunGi Kim, Byunghan Lee, and Sungroh Yoon. "Protein transfer learning improves identification of heat shock protein families." PLOS ONE 16, no. 5 (May 18, 2021): e0251865. http://dx.doi.org/10.1371/journal.pone.0251865.
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