Статті в журналах з теми "16S amplicon analysis"
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Devloo-Delva, Floriaan, Roger Huerlimann, Gladys Chua, Jordan K. Matley, Michelle R. Heupel, Colin A. Simpfendorfer, and Gregory E. Maes. "How does marker choice affect your diet analysis: comparing genetic markers and digestion levels for diet metabarcoding of tropical-reef piscivores." Marine and Freshwater Research 70, no. 1 (2019): 8. http://dx.doi.org/10.1071/mf17209.
Повний текст джерелаAnsorge, Rebecca, Giovanni Birolo, Stephen A. James, and Andrea Telatin. "Dadaist2: A Toolkit to Automate and Simplify Statistical Analysis and Plotting of Metabarcoding Experiments." International Journal of Molecular Sciences 22, no. 10 (May 18, 2021): 5309. http://dx.doi.org/10.3390/ijms22105309.
Повний текст джерелаZhang, Ke, Rongnan Lin, Yujun Chang, Qing Zhou, and Zhi Zhang. "16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis." PeerJ 10 (September 23, 2022): e14043. http://dx.doi.org/10.7717/peerj.14043.
Повний текст джерелаLeonard, Caroline, Damien Thiry, Bernard Taminiau, Georges Daube, and Jacques Fontaine. "External Ear Canal Evaluation in Dogs with Chronic Suppurative Otitis Externa: Comparison of Direct Cytology, Bacterial Culture and 16S Amplicon Profiling." Veterinary Sciences 9, no. 7 (July 18, 2022): 366. http://dx.doi.org/10.3390/vetsci9070366.
Повний текст джерелаYu, Jeong suk, Minhee Kim, Il-Hoon Cho, Yu-Min Sim, and Young Sun Hwang. "Evidence Supporting Oral Hygiene Management by Owners through a Genetic Analysis of Dental Plaque Bacteria in Dogs." Veterinary Sciences 11, no. 2 (February 19, 2024): 96. http://dx.doi.org/10.3390/vetsci11020096.
Повний текст джерелаTheil, Sebastien, and Etienne Rifa. "rANOMALY: AmplicoN wOrkflow for Microbial community AnaLYsis." F1000Research 10 (January 7, 2021): 7. http://dx.doi.org/10.12688/f1000research.27268.1.
Повний текст джерелаHjelmsø, Mathis Hjort, Lars Hestbjerg Hansen, Jacob Bælum, Louise Feld, William E. Holben, and Carsten Suhr Jacobsen. "High-Resolution Melt Analysis for Rapid Comparison of Bacterial Community Compositions." Applied and Environmental Microbiology 80, no. 12 (March 7, 2014): 3568–75. http://dx.doi.org/10.1128/aem.03923-13.
Повний текст джерелаÁlvarez Narváez, Sonsiray, Megan S. Beaudry, Connor G. Norris, Paula B. Bartlett, Travis C. Glenn, and Susan Sanchez. "Improved Equine Fecal Microbiome Characterization Using Target Enrichment by Hybridization Capture." Animals 14, no. 3 (January 29, 2024): 445. http://dx.doi.org/10.3390/ani14030445.
Повний текст джерелаTang, Jianming, John K. Moulton, Kenneth Pruess, Eddie W. Cupp, and Thomas R. Unnasch. "Genetic variation in North American black flies in the subgenus Psilopelmia (Simulium: Diptera: Simuliidae)." Canadian Journal of Zoology 76, no. 2 (February 1, 1998): 205–11. http://dx.doi.org/10.1139/z97-190.
Повний текст джерелаNelson, Michael C., Hilary G. Morrison, Jacquelynn Benjamino, Sharon L. Grim, and Joerg Graf. "Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys." PLoS ONE 9, no. 4 (April 10, 2014): e94249. http://dx.doi.org/10.1371/journal.pone.0094249.
Повний текст джерелаPlaný, Matej, Tomáš Kuchta, Katarína Šoltýs, Tomáš Szemes, Domenico Pangallo, and Peter Siekel. "Metagenomic Analysis of Slovak Bryndza Cheese Using Next-Generation 16S rDNA Amplicon Sequencing." Nova Biotechnologica et Chimica 15, no. 1 (June 1, 2016): 23–34. http://dx.doi.org/10.1515/nbec-2016-0003.
Повний текст джерелаda Silva, Cleiziane Bispo, Hellen Ribeiro Martins dos Santos, Phellippe Arthur Santos Marbach, Jorge Teodoro de Souza, Valter Cruz-Magalhães, Ronaldo Costa Argôlo-Filho, and Leandro Lopes Loguercio. "First-tier detection of intragenomic 16S rRNA gene variation in culturable endophytic bacteria from cacao seeds." PeerJ 7 (November 20, 2019): e7452. http://dx.doi.org/10.7717/peerj.7452.
Повний текст джерелаSierra, Maria A., Qianhao Li, Smruti Pushalkar, Bidisha Paul, Tito A. Sandoval, Angela R. Kamer, Patricia Corby, et al. "The Influences of Bioinformatics Tools and Reference Databases in Analyzing the Human Oral Microbial Community." Genes 11, no. 8 (August 3, 2020): 878. http://dx.doi.org/10.3390/genes11080878.
Повний текст джерелаYen, Sandi, Jethro Johnson, and Nicholas E. Ilott. "Streamlined processing and analysis of 16S rRNA amplicon sequencing data with OCMS_16S and OCMSlooksy." Wellcome Open Research 7 (February 23, 2022): 68. http://dx.doi.org/10.12688/wellcomeopenres.17632.1.
Повний текст джерелаRanjan, Ravi, Asha Rani, Ahmed Metwally, Halvor S. McGee, and David L. Perkins. "Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing." Biochemical and Biophysical Research Communications 469, no. 4 (January 2016): 967–77. http://dx.doi.org/10.1016/j.bbrc.2015.12.083.
Повний текст джерелаMurovec, Boštjan, Leon Deutsch, and Blaž Stres. "General Unified Microbiome Profiling Pipeline (GUMPP) for Large Scale, Streamlined and Reproducible Analysis of Bacterial 16S rRNA Data to Predicted Microbial Metagenomes, Enzymatic Reactions and Metabolic Pathways." Metabolites 11, no. 6 (May 24, 2021): 336. http://dx.doi.org/10.3390/metabo11060336.
Повний текст джерелаFujimoto, Naoshi, Keigo Mizuno, Tomoki Yokoyama, Akihiro Ohnishi, Masaharu Suzuki, Satoru Watanabe, Kenji Komatsu, et al. "Community analysis of picocyanobacteria in an oligotrophic lake by cloning 16S rRNA gene and 16S rRNA gene amplicon sequencing." Journal of General and Applied Microbiology 61, no. 5 (2015): 171–76. http://dx.doi.org/10.2323/jgam.61.171.
Повний текст джерелаNakajima, Aruto, Keisuke Yoshida, Aina Gotoh, Toshihiko Katoh, Miriam N. Ojima, Mikiyasu Sakanaka, Jin-Zhong Xiao, Toshitaka Odamaki, and Takane Katayama. "A simple method that enhances minority species detection in the microbiota: 16S metagenome-DRIP (Deeper Resolution using an Inhibitory Primer)." Microbiome Research Reports 1, no. 3 (2022): 20. http://dx.doi.org/10.20517/mrr.2022.08.
Повний текст джерелаGuo, Mengmeng, Xi Cao, Ke Zhang, Menghao Pan, Yujiang Wu, Suo Langda, Yuxin Yang, Yulin Chen, Ba Gui, and Baohua Ma. "16S rRNA Gene Sequencing Revealed Changes in Gut Microbiota Composition during Pregnancy and Lactation in Mice Model." Veterinary Sciences 9, no. 4 (April 1, 2022): 169. http://dx.doi.org/10.3390/vetsci9040169.
Повний текст джерелаTorrell, Helena, Adrià Cereto-Massagué, Polina Kazakova, Lorena García, Héctor Palacios, and Núria Canela. "Multiomic Approach to Analyze Infant Gut Microbiota: Experimental and Analytical Method Optimization." Biomolecules 11, no. 7 (July 7, 2021): 999. http://dx.doi.org/10.3390/biom11070999.
Повний текст джерелаYaman, Belma Nural. "Metagenomics (16S Amplicon Sequencing) and DGGE Analysis of Bacterial Diversity of Acid Mine Drainage." Journal of Microbiology, Biotechnology and Food Sciences 9, no. 5 (April 2020): 932–36. http://dx.doi.org/10.15414/jmbfs.2020.9.5.932-936.
Повний текст джерелаGonzalez, Emmanuel, Frederic E. Pitre, and Nicholas J. B. Brereton. "ANCHOR: a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples." Environmental Microbiology 21, no. 7 (May 21, 2019): 2440–68. http://dx.doi.org/10.1111/1462-2920.14632.
Повний текст джерелаSibanda, Timothy, Ramganesh Selvarajan, and Memory Tekere. "Targeted 16S rRNA amplicon analysis reveals the diversity of bacterial communities in carwash effluents." International Microbiology 22, no. 2 (October 26, 2018): 181–89. http://dx.doi.org/10.1007/s10123-018-00038-0.
Повний текст джерелаRamiro-Garcia, Javier, Gerben D. A. Hermes, Christos Giatsis, Detmer Sipkema, Erwin G. Zoetendal, Peter J. Schaap, and Hauke Smidt. "NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes." F1000Research 5 (November 23, 2018): 1791. http://dx.doi.org/10.12688/f1000research.9227.2.
Повний текст джерелаChun, Jongsik, Anwarul Huq, and Rita R. Colwell. "Analysis of 16S-23S rRNA Intergenic Spacer Regions of Vibrio cholerae and Vibrio mimicus." Applied and Environmental Microbiology 65, no. 5 (May 1, 1999): 2202–8. http://dx.doi.org/10.1128/aem.65.5.2202-2208.1999.
Повний текст джерелаBarak, Noga, Eduard Fadeev, Vera Brekhman, Dikla Aharonovich, Tamar Lotan, and Daniel Sher. "Selecting 16S rRNA Primers for Microbiome Analysis in a Host–Microbe System: The Case of the Jellyfish Rhopilema nomadica." Microorganisms 11, no. 4 (April 6, 2023): 955. http://dx.doi.org/10.3390/microorganisms11040955.
Повний текст джерелаBergsten, Pauline, Pauline Vannier, Julie Frion, Alan Mougeolle, and Viggó Þór Marteinsson. "Culturable Bacterial Diversity from the Basaltic Subsurface of the Young Volcanic Island of Surtsey, Iceland." Microorganisms 10, no. 6 (June 8, 2022): 1177. http://dx.doi.org/10.3390/microorganisms10061177.
Повний текст джерелаMcAdams, Zachary, Kevin Gustafson, and Aaron Ericsson. "The Effect of Common Viral Inactivation Techniques on 16S rRNA Amplicon-Based Analysis of the Gut Microbiota." Microorganisms 9, no. 8 (August 17, 2021): 1755. http://dx.doi.org/10.3390/microorganisms9081755.
Повний текст джерелаForero-Becerra, Elkin, Jignesh Patel, Heidy-C. Martínez-Díaz, Paola Betancourt-Ruiz, Efraín Benavides, Steven Durán, Luz-A. Olaya-Másmela, Eliana Bolaños, Marylin Hidalgo, and Jere W. McBride. "Seroprevalence and Genotypic Analysis of Ehrlichia canis Infection in Dogs and Humans in Cauca, Colombia." American Journal of Tropical Medicine and Hygiene 104, no. 5 (May 5, 2021): 1771–76. http://dx.doi.org/10.4269/ajtmh.20-0965.
Повний текст джерелаRamiro-Garcia, Javier, Gerben D. A. Hermes, Christos Giatsis, Detmer Sipkema, Erwin G. Zoetendal, Peter J. Schaap, and Hauke Smidt. "NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes." F1000Research 5 (July 22, 2016): 1791. http://dx.doi.org/10.12688/f1000research.9227.1.
Повний текст джерелаNAKAYAMA, Jiro, Jiahui JIANG, Koichi WATANABE, Kangting CHEN, Huang NINXIN, Kazunori MATSUDA, Takashi KURAKAWA, Hirokazu TSUJI, Kenji SONOMOTO, and Yuan-Kun LEE. "Up to Species-level Community Analysis of Human Gut Microbiota by 16S rRNA Amplicon Pyrosequencing." Bioscience of Microbiota, Food and Health 32, no. 2 (2013): 69–76. http://dx.doi.org/10.12938/bmfh.32.69.
Повний текст джерелаRoberto, Frank F. "16S-rRNA gene-targeted amplicon sequence analysis of an enargite-dominant bioleach demonstration in Peru." Hydrometallurgy 180 (September 2018): 271–76. http://dx.doi.org/10.1016/j.hydromet.2018.08.005.
Повний текст джерелаBarret, Maialen, Nathalie Gagnon, Martin L. Kalmokoff, Edward Topp, Yris Verastegui, Stephen P. J. Brooks, Fernando Matias, Josh D. Neufeld, and Guylaine Talbot. "Identification of Methanoculleus spp. as Active Methanogens during Anoxic Incubations of Swine Manure Storage Tank Samples." Applied and Environmental Microbiology 79, no. 2 (October 26, 2012): 424–33. http://dx.doi.org/10.1128/aem.02268-12.
Повний текст джерелаMurphy, Robert, and Mikael Lenz Strube. "RibDif2: Expanding amplicon analysis to full genomes." Bioinformatics Advances, August 21, 2023. http://dx.doi.org/10.1093/bioadv/vbad111.
Повний текст джерелаIzak, D., A. Gromadka, and S. Kaczanowski. "Mothulity Facilitates 16S/ITS Amplicon Diversity Analysis." Current Protocols in Bioinformatics 69, no. 1 (February 24, 2020). http://dx.doi.org/10.1002/cpbi.94.
Повний текст джерелаZorz, Jackie, Carmen Li, Anirban Chakraborty, Daniel A. Gittins, Taylor Surcon, Natasha Morrison, Robbie Bennett, Adam MacDonald, and Casey R. J. Hubert. "SituSeq: an offline protocol for rapid and remote Nanopore 16S rRNA amplicon sequence analysis." ISME Communications 3, no. 1 (April 20, 2023). http://dx.doi.org/10.1038/s43705-023-00239-3.
Повний текст джерелаStrube, Mikael Lenz. "RibDif: Can individual species be differentiated by 16S sequencing?" Bioinformatics Advances, September 6, 2021. http://dx.doi.org/10.1093/bioadv/vbab020.
Повний текст джерелаZhang, Tianyuan, Hanzhou Li, Silin Ma, Jian Cao, Hao Liao, Qiaoyun Huang, and Wenli Chen. "The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling." Applied and Environmental Microbiology, October 6, 2023. http://dx.doi.org/10.1128/aem.00605-23.
Повний текст джерелаTremblay, Julien, and Etienne Yergeau. "Systematic processing of ribosomal RNA gene amplicon sequencing data." GigaScience 8, no. 12 (December 1, 2019). http://dx.doi.org/10.1093/gigascience/giz146.
Повний текст джерелаKinoshita, Yuta, Hidekazu Niwa, Eri Uchida-Fujii, and Toshio Nukada. "Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome." Scientific Reports 11, no. 1 (June 4, 2021). http://dx.doi.org/10.1038/s41598-021-91425-7.
Повний текст джерелаXue, Zhengyao, Mary E. Kable, and Maria L. Marco. "Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products." mSphere 3, no. 5 (October 17, 2018). http://dx.doi.org/10.1128/msphere.00410-18.
Повний текст джерелаMiura, Hiroto, Masayuki Takeda, Megumi Yamaguchi, Yoshihisa Ohtani, Go Endo, Yasuhisa Masuda, Kaede Ito, et al. "Application of MinION Amplicon Sequencing to Buccal Swab Samples for Improving Resolution and Throughput of Rumen Microbiota Analysis." Frontiers in Microbiology 13 (March 24, 2022). http://dx.doi.org/10.3389/fmicb.2022.783058.
Повний текст джерелаZheng, Jun-Jie, Po-Wen Wang, Tzu-Wen Huang, Yao-Jong Yang, Hua-Sheng Chiu, Pavel Sumazin, and Ting-Wen Chen. "MOCHI, a comprehensive cross-platform tool for amplicon-based microbiota analysis." Bioinformatics, July 25, 2022. http://dx.doi.org/10.1093/bioinformatics/btac494.
Повний текст джерелаUmbach, Alexander K., Champika Fernando, Janet E. Hill, and Josh D. Neufeld. "Evaluating cpn60 for high-resolution profiling of the mammalian skin microbiome and detection of phylosymbiosis." ISME Communications 3, no. 1 (July 7, 2023). http://dx.doi.org/10.1038/s43705-023-00276-y.
Повний текст джерелаOdom, Aubrey R., Tyler Faits, Eduardo Castro-Nallar, Keith A. Crandall, and W. Evan Johnson. "Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data." Scientific Reports 13, no. 1 (August 26, 2023). http://dx.doi.org/10.1038/s41598-023-40799-x.
Повний текст джерелаMatsuo, Yoshiyuki, Shinnosuke Komiya, Yoshiaki Yasumizu, Yuki Yasuoka, Katsura Mizushima, Tomohisa Takagi, Kirill Kryukov, et al. "Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution." BMC Microbiology 21, no. 1 (January 26, 2021). http://dx.doi.org/10.1186/s12866-021-02094-5.
Повний текст джерелаBeaudry, Megan S., Jincheng Wang, Troy J. Kieran, Jesse Thomas, Natalia J. Bayona-Vásquez, Bei Gao, Alison Devault, et al. "Improved Microbial Community Characterization of 16S rRNA via Metagenome Hybridization Capture Enrichment." Frontiers in Microbiology 12 (April 27, 2021). http://dx.doi.org/10.3389/fmicb.2021.644662.
Повний текст джерелаOlivier, Sandra A., Michelle K. Bull, Mikael Lenz Strube, Robert Murphy, Tom Ross, John P. Bowman, and Belinda Chapman. "Long-read MinION™ sequencing of 16S and 16S-ITS-23S rRNA genes provides species-level resolution of Lactobacillaceae in mixed communities." Frontiers in Microbiology 14 (December 7, 2023). http://dx.doi.org/10.3389/fmicb.2023.1290756.
Повний текст джерелаMolano, Leidy-Alejandra G., Sara Vega-Abellaneda, and Chaysavanh Manichanh. "GSR-DB: a manually curated and optimized taxonomical database for 16S rRNA amplicon analysis." mSystems, January 8, 2024. http://dx.doi.org/10.1128/msystems.00950-23.
Повний текст джерелаZiesemer, Kirsten A., Allison E. Mann, Krithivasan Sankaranarayanan, Hannes Schroeder, Andrew T. Ozga, Bernd W. Brandt, Egija Zaura, et al. "Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification." Scientific Reports 5, no. 1 (November 13, 2015). http://dx.doi.org/10.1038/srep16498.
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