Artigos de revistas sobre o tema "IDPs/IDRs"
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Han, Bingqing, Chongjiao Ren, Wenda Wang, Jiashan Li e Xinqi Gong. "Computational Prediction of Protein Intrinsically Disordered Region Related Interactions and Functions". Genes 14, n.º 2 (8 de fevereiro de 2023): 432. http://dx.doi.org/10.3390/genes14020432.
Texto completo da fonteCoskuner-Weber, Orkid, e Vladimir N. Uversky. "Current Stage and Future Perspectives for Homology Modeling, Molecular Dynamics Simulations, Machine Learning with Molecular Dynamics, and Quantum Computing for Intrinsically Disordered Proteins and Proteins with Intrinsically Disordered Regions". Current Protein & Peptide Science 25, n.º 2 (fevereiro de 2024): 163–71. http://dx.doi.org/10.2174/0113892037281184231123111223.
Texto completo da fonteLiu, Meili, Akshaya K. Das, James Lincoff, Sukanya Sasmal, Sara Y. Cheng, Robert M. Vernon, Julie D. Forman-Kay e Teresa Head-Gordon. "Configurational Entropy of Folded Proteins and Its Importance for Intrinsically Disordered Proteins". International Journal of Molecular Sciences 22, n.º 7 (26 de março de 2021): 3420. http://dx.doi.org/10.3390/ijms22073420.
Texto completo da fonteFelli, Isabella C., Wolfgang Bermel e Roberta Pierattelli. "Exclusively heteronuclear NMR experiments for the investigation of intrinsically disordered proteins: focusing on proline residues". Magnetic Resonance 2, n.º 1 (1 de julho de 2021): 511–22. http://dx.doi.org/10.5194/mr-2-511-2021.
Texto completo da fonteAhmed, Shehab S., Zaara T. Rifat, Ruchi Lohia, Arthur J. Campbell, A. Keith Dunker, M. Sohel Rahman e Sumaiya Iqbal. "Characterization of intrinsically disordered regions in proteins informed by human genetic diversity". PLOS Computational Biology 18, n.º 3 (11 de março de 2022): e1009911. http://dx.doi.org/10.1371/journal.pcbi.1009911.
Texto completo da fonteAlshehri, Manal A., Manee M. Manee, Mohamed B. Al-Fageeh e Badr M. Al-Shomrani. "Genomic Analysis of Intrinsically Disordered Proteins in the Genus Camelus". International Journal of Molecular Sciences 21, n.º 11 (3 de junho de 2020): 4010. http://dx.doi.org/10.3390/ijms21114010.
Texto completo da fonteMedvedev, Kirill E., Jimin Pei e Nick V. Grishin. "DisEnrich: database of enriched regions in human dark proteome". Bioinformatics 38, n.º 7 (30 de janeiro de 2022): 1870–76. http://dx.doi.org/10.1093/bioinformatics/btac051.
Texto completo da fonteKastano, Kristina, Gábor Erdős, Pablo Mier, Gregorio Alanis-Lobato, Vasilis J. Promponas, Zsuzsanna Dosztányi e Miguel A. Andrade-Navarro. "Evolutionary Study of Disorder in Protein Sequences". Biomolecules 10, n.º 10 (6 de outubro de 2020): 1413. http://dx.doi.org/10.3390/biom10101413.
Texto completo da fonteMcFadden, William M., e Judith L. Yanowitz. "idpr: A package for profiling and analyzing Intrinsically Disordered Proteins in R". PLOS ONE 17, n.º 4 (18 de abril de 2022): e0266929. http://dx.doi.org/10.1371/journal.pone.0266929.
Texto completo da fonteSaito, Akatsuki, Maya Shofa, Hirotaka Ode, Maho Yumiya, Junki Hirano, Toru Okamoto e Shige H. Yoshimura. "How Do Flaviviruses Hijack Host Cell Functions by Phase Separation?" Viruses 13, n.º 8 (28 de julho de 2021): 1479. http://dx.doi.org/10.3390/v13081479.
Texto completo da fonteGill, Michelle L., R. Andrew Byrd e Arthur G. Palmer, III. "Dynamics of GCN4 facilitate DNA interaction: a model-free analysis of an intrinsically disordered region". Physical Chemistry Chemical Physics 18, n.º 8 (2016): 5839–49. http://dx.doi.org/10.1039/c5cp06197k.
Texto completo da fonteBrocca, Stefania, Rita Grandori, Sonia Longhi e Vladimir Uversky. "Liquid–Liquid Phase Separation by Intrinsically Disordered Protein Regions of Viruses: Roles in Viral Life Cycle and Control of Virus–Host Interactions". International Journal of Molecular Sciences 21, n.º 23 (28 de novembro de 2020): 9045. http://dx.doi.org/10.3390/ijms21239045.
Texto completo da fonteVovk, Andrei, e Anton Zilman. "Effects of Sequence Composition, Patterning and Hydrodynamics on the Conformation and Dynamics of Intrinsically Disordered Proteins". International Journal of Molecular Sciences 24, n.º 2 (11 de janeiro de 2023): 1444. http://dx.doi.org/10.3390/ijms24021444.
Texto completo da fonteFujiwara, Satoru. "Dynamical Behavior of Disordered Regions in Disease-Related Proteins Revealed by Quasielastic Neutron Scattering". Medicina 58, n.º 6 (13 de junho de 2022): 795. http://dx.doi.org/10.3390/medicina58060795.
Texto completo da fonteChiang, Wan-Chin, Ming-Hsuan Lee, Tsai-Chen Chen e Jie-rong Huang. "Interactions between the Intrinsically Disordered Regions of hnRNP-A2 and TDP-43 Accelerate TDP-43′s Conformational Transition". International Journal of Molecular Sciences 21, n.º 16 (18 de agosto de 2020): 5930. http://dx.doi.org/10.3390/ijms21165930.
Texto completo da fontePintado-Grima, Carlos, Oriol Bárcenas e Salvador Ventura. "In-Silico Analysis of pH-Dependent Liquid-Liquid Phase Separation in Intrinsically Disordered Proteins". Biomolecules 12, n.º 7 (12 de julho de 2022): 974. http://dx.doi.org/10.3390/biom12070974.
Texto completo da fonteWatson, Matthew, e Katherine Stott. "Disordered domains in chromatin-binding proteins". Essays in Biochemistry 63, n.º 1 (abril de 2019): 147–56. http://dx.doi.org/10.1042/ebc20180068.
Texto completo da fonteBianchi, Greta, Sonia Longhi, Rita Grandori e Stefania Brocca. "Relevance of Electrostatic Charges in Compactness, Aggregation, and Phase Separation of Intrinsically Disordered Proteins". International Journal of Molecular Sciences 21, n.º 17 (27 de agosto de 2020): 6208. http://dx.doi.org/10.3390/ijms21176208.
Texto completo da fonteAvramov, Miloš, Éva Schád, Ágnes Révész, Lilla Turiák, Iva Uzelac, Ágnes Tantos, László Drahos e Željko D. Popović. "Identification of Intrinsically Disordered Proteins and Regions in a Non-Model Insect Species Ostrinia nubilalis (Hbn.)". Biomolecules 12, n.º 4 (18 de abril de 2022): 592. http://dx.doi.org/10.3390/biom12040592.
Texto completo da fontePang, Yihe, e Bin Liu. "IDP-LM: Prediction of protein intrinsic disorder and disorder functions based on language models". PLOS Computational Biology 19, n.º 11 (22 de novembro de 2023): e1011657. http://dx.doi.org/10.1371/journal.pcbi.1011657.
Texto completo da fonteGrahl, Matheus V. Coste, Fernanda Cortez Lopes, Anne H. Souza Martinelli, Celia R. Carlini e Leonardo L. Fruttero. "Structure-Function Insights of Jaburetox and Soyuretox: Novel Intrinsically Disordered Polypeptides Derived from Plant Ureases". Molecules 25, n.º 22 (16 de novembro de 2020): 5338. http://dx.doi.org/10.3390/molecules25225338.
Texto completo da fonteDavey, Norman E., M. Madan Babu, Martin Blackledge, Alan Bridge, Salvador Capella-Gutierrez, Zsuzsanna Dosztanyi, Rachel Drysdale et al. "An intrinsically disordered proteins community for ELIXIR". F1000Research 8 (15 de outubro de 2019): 1753. http://dx.doi.org/10.12688/f1000research.20136.1.
Texto completo da fonteSammak, Susan, e Giovanna Zinzalla. "Targeting protein–protein interactions (PPIs) of transcription factors: Challenges of intrinsically disordered proteins (IDPs) and regions (IDRs)". Progress in Biophysics and Molecular Biology 119, n.º 1 (outubro de 2015): 41–46. http://dx.doi.org/10.1016/j.pbiomolbio.2015.06.004.
Texto completo da fonteErdős, Gábor, Mátyás Pajkos e Zsuzsanna Dosztányi. "IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation". Nucleic Acids Research 49, W1 (28 de maio de 2021): W297—W303. http://dx.doi.org/10.1093/nar/gkab408.
Texto completo da fonteSun, Xiaolin, William T. Jones e Erik H. A. Rikkerink. "GRAS proteins: the versatile roles of intrinsically disordered proteins in plant signalling". Biochemical Journal 442, n.º 1 (27 de janeiro de 2012): 1–12. http://dx.doi.org/10.1042/bj20111766.
Texto completo da fonteRoterman, Irena, Katarzyna Stapor, Piotr Fabian e Leszek Konieczny. "New insights into disordered proteins and regions according to the FOD-M model". PLOS ONE 17, n.º 10 (10 de outubro de 2022): e0275300. http://dx.doi.org/10.1371/journal.pone.0275300.
Texto completo da fonteWilson, Carter J., Wing-Yiu Choy e Mikko Karttunen. "AlphaFold2: A Role for Disordered Protein/Region Prediction?" International Journal of Molecular Sciences 23, n.º 9 (21 de abril de 2022): 4591. http://dx.doi.org/10.3390/ijms23094591.
Texto completo da fonteFrench-Pacheco, Leidys, Omar Rosas-Bringas, Lorenzo Segovia e Alejandra A. Covarrubias. "Intrinsically disordered signaling proteins: Essential hub players in the control of stress responses in Saccharomyces cerevisiae". PLOS ONE 17, n.º 3 (15 de março de 2022): e0265422. http://dx.doi.org/10.1371/journal.pone.0265422.
Texto completo da fonteLiu, Yumeng, Xiaolong Wang e Bin Liu. "IDP–CRF: Intrinsically Disordered Protein/Region Identification Based on Conditional Random Fields". International Journal of Molecular Sciences 19, n.º 9 (22 de agosto de 2018): 2483. http://dx.doi.org/10.3390/ijms19092483.
Texto completo da fonteChu, Wen-Ting, e Jin Wang. "Thermodynamic and sequential characteristics of phase separation and droplet formation for an intrinsically disordered region/protein ensemble". PLOS Computational Biology 17, n.º 3 (8 de março de 2021): e1008672. http://dx.doi.org/10.1371/journal.pcbi.1008672.
Texto completo da fonteBianchi, Greta, Stefania Brocca, Sonia Longhi e Vladimir N. Uversky. "Liaisons dangereuses: Intrinsic Disorder in Cellular Proteins Recruited to Viral Infection-Related Biocondensates". International Journal of Molecular Sciences 24, n.º 3 (21 de janeiro de 2023): 2151. http://dx.doi.org/10.3390/ijms24032151.
Texto completo da fonteBeveridge, Rebecca, e Antonio N. Calabrese. "Structural Proteomics Methods to Interrogate the Conformations and Dynamics of Intrinsically Disordered Proteins". Frontiers in Chemistry 9 (11 de março de 2021). http://dx.doi.org/10.3389/fchem.2021.603639.
Texto completo da fonteQuaglia, Federica, Anastasia Chasapi, Maria Victoria Nugnes, Maria Cristina Aspromonte, Emanuela Leonardi, Damiano Piovesan e Silvio C. E. Tosatto. "Best practices for the manual curation of intrinsically disordered proteins in DisProt". Database 2024 (1 de janeiro de 2024). http://dx.doi.org/10.1093/database/baae009.
Texto completo da fonteBondos, Sarah E., A. Keith Dunker e Vladimir N. Uversky. "On the roles of intrinsically disordered proteins and regions in cell communication and signaling". Cell Communication and Signaling 19, n.º 1 (30 de agosto de 2021). http://dx.doi.org/10.1186/s12964-021-00774-3.
Texto completo da fonteLiu, Yumeng, Xiaolong Wang e Bin Liu. "RFPR-IDP: reduce the false positive rates for intrinsically disordered protein and region prediction by incorporating both fully ordered proteins and disordered proteins". Briefings in Bioinformatics, 28 de fevereiro de 2020. http://dx.doi.org/10.1093/bib/bbaa018.
Texto completo da fonteHowton, T. C., Yingqian Ada Zhan, Yali Sun e M. Shahid Mukhtar. "Intrinsically disordered proteins: controlled chaos or random walk". International Journal of Plant Biology 6, n.º 1 (9 de fevereiro de 2016). http://dx.doi.org/10.4081/pb.2015.6191.
Texto completo da fonteIserte, Javier A., Tamas Lazar, Silvio C. E. Tosatto, Peter Tompa e Cristina Marino-Buslje. "Chasing coevolutionary signals in intrinsically disordered proteins complexes". Scientific Reports 10, n.º 1 (21 de outubro de 2020). http://dx.doi.org/10.1038/s41598-020-74791-6.
Texto completo da fonteSigrist, Stephan J., e Volker Haucke. "Orchestrating vesicular and nonvesicular membrane dynamics by intrinsically disordered proteins". EMBO reports, 8 de setembro de 2023. http://dx.doi.org/10.15252/embr.202357758.
Texto completo da fonteRoterman, Irena, Katarzyna Stapor e Leszek Konieczny. "Engagement of intrinsic disordered proteins in protein–protein interaction". Frontiers in Molecular Biosciences 10 (31 de julho de 2023). http://dx.doi.org/10.3389/fmolb.2023.1230922.
Texto completo da fonteZhang, Zhengjian, Zarko Boskovic, Mahmud M. Hussain, Wenxin Hu, Carla Inouye, Han-Je Kim, A. Katherine Abole et al. "Chemical perturbation of an intrinsically disordered region of TFIID distinguishes two modes of transcription initiation". eLife 4 (28 de agosto de 2015). http://dx.doi.org/10.7554/elife.07777.
Texto completo da fontePang, Yihe, e Bin Liu. "DisoFLAG: accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model". BMC Biology 22, n.º 1 (2 de janeiro de 2024). http://dx.doi.org/10.1186/s12915-023-01803-y.
Texto completo da fonteCubuk, Jasmine, Melissa D. Stuchell-Brereton e Andrea Soranno. "The biophysics of disordered proteins from the point of view of single-molecule fluorescence spectroscopy". Essays in Biochemistry, 23 de novembro de 2022. http://dx.doi.org/10.1042/ebc20220065.
Texto completo da fonteGandass, Nishu, Kajal e Prafull Salvi. "Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice". Frontiers in Plant Science 13 (29 de julho de 2022). http://dx.doi.org/10.3389/fpls.2022.956299.
Texto completo da fonteChen, Serena H., Kevin L. Weiss, Christopher Stanley e Debsindhu Bhowmik. "Structural characterization of an intrinsically disordered protein complex using integrated small‐angle neutron scattering and computing". Protein Science, 30 de agosto de 2023. http://dx.doi.org/10.1002/pro.4772.
Texto completo da fonteAvni, Anamika, Ashish Joshi, Anuja Walimbe, Swastik G. Pattanashetty e Samrat Mukhopadhyay. "Single-droplet surface-enhanced Raman scattering decodes the molecular determinants of liquid-liquid phase separation". Nature Communications 13, n.º 1 (28 de julho de 2022). http://dx.doi.org/10.1038/s41467-022-32143-0.
Texto completo da fonteDi Ianni, Alessio, Christian Tüting, Marc Kipping, Christian H. Ihling, Janett Köppen, Claudio Iacobucci, Christian Arlt, Panagiotis L. Kastritis e Andrea Sinz. "Structural assessment of the full-length wild-type tumor suppressor protein p53 by mass spectrometry-guided computational modeling". Scientific Reports 13, n.º 1 (25 de maio de 2023). http://dx.doi.org/10.1038/s41598-023-35437-5.
Texto completo da fonteChow, Vimanda, Esther Wolf, Cristina Lento e Derek J. Wilson. "Developments in rapid hydrogen–deuterium exchange methods". Essays in Biochemistry, 13 de janeiro de 2023. http://dx.doi.org/10.1042/ebc20220174.
Texto completo da fonteShafat, Zoya, Anwar Ahmed, Mohammad K. Parvez e Shama Parveen. "Intrinsic disorder in the open reading frame 2 of hepatitis E virus: a protein with multiple functions beyond viral capsid". Journal of Genetic Engineering and Biotechnology 21, n.º 1 (16 de março de 2023). http://dx.doi.org/10.1186/s43141-023-00477-x.
Texto completo da fonteLiu, Zi Hao, João M. C. Teixeira, Oufan Zhang, Thomas E. Tsangaris, Jie Li, Claudiu C. Gradinaru, Teresa Head-Gordon e Julie D. Forman-Kay. "Local Disordered Region Sampling (LDRS) for Ensemble Modeling of Proteins with Experimentally Undetermined or Low Confidence Prediction Segments". Bioinformatics, 7 de dezembro de 2023. http://dx.doi.org/10.1093/bioinformatics/btad739.
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