Artigos de revistas sobre o tema "Domains of topological association"
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Warfield, Linda, Jie Luo, Jeffrey Ranish e Steven Hahn. "Function of Conserved Topological Regions within the Saccharomyces cerevisiae Basal Transcription Factor TFIIH". Molecular and Cellular Biology 36, n.º 19 (5 de julho de 2016): 2464–75. http://dx.doi.org/10.1128/mcb.00182-16.
Texto completo da fonteMarinov, Georgi K., Alexandro E. Trevino, Tingting Xiang, Anshul Kundaje, Arthur R. Grossman e William J. Greenleaf. "Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum". Nature Genetics 53, n.º 5 (29 de abril de 2021): 613–17. http://dx.doi.org/10.1038/s41588-021-00848-5.
Texto completo da fonteLiu, Qian, Nelly Pante, Tom Misteli, Mohamed Elsagga, Melissa Crisp, Didier Hodzic, Brian Burke e Kyle J. Roux. "Functional association of Sun1 with nuclear pore complexes". Journal of Cell Biology 178, n.º 5 (27 de agosto de 2007): 785–98. http://dx.doi.org/10.1083/jcb.200704108.
Texto completo da fonteWillemin, Andréa, Lucille Lopez-Delisle, Christopher Chase Bolt, Marie-Laure Gadolini, Denis Duboule e Eddie Rodriguez-Carballo. "Induction of a chromatin boundary in vivo upon insertion of a TAD border". PLOS Genetics 17, n.º 7 (22 de julho de 2021): e1009691. http://dx.doi.org/10.1371/journal.pgen.1009691.
Texto completo da fonteZhan, Y., L. Giorgetti e G. Tiana. "Modelling genome-wide topological associating domains in mouse embryonic stem cells". Chromosome Research 25, n.º 1 (20 de janeiro de 2017): 5–14. http://dx.doi.org/10.1007/s10577-016-9544-6.
Texto completo da fonteZhang, Guangzhi, e Hélène Sanfaçon. "Characterization of Membrane Association Domains within the Tomato Ringspot Nepovirus X2 Protein, an Endoplasmic Reticulum-Targeted Polytopic MembraneProtein". Journal of Virology 80, n.º 21 (23 de agosto de 2006): 10847–57. http://dx.doi.org/10.1128/jvi.00789-06.
Texto completo da fonteDavidson, Iain F., Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz e Jan-Michael Peters. "DNA loop extrusion by human cohesin". Science 366, n.º 6471 (21 de novembro de 2019): 1338–45. http://dx.doi.org/10.1126/science.aaz3418.
Texto completo da fonteLi, Yufang, Aoshen Wu, Gang Liu e Lei Liu. "A Review of Methods to Quantify the Genomic Similarity of Topological Associating Domains". Journal of Computational Biology 26, n.º 11 (1 de novembro de 2019): 1326–38. http://dx.doi.org/10.1089/cmb.2019.0129.
Texto completo da fonteFranzini, Stefano, Marco Di Stefano e Cristian Micheletti. "essHi-C: essential component analysis of Hi-C matrices". Bioinformatics 37, n.º 15 (1 de fevereiro de 2021): 2088–94. http://dx.doi.org/10.1093/bioinformatics/btab062.
Texto completo da fonteSoler-Vila, Paula, Pol Cuscó, Irene Farabella, Marco Di Stefano e Marc A. Marti-Renom. "Hierarchical chromatin organization detected by TADpole". Nucleic Acids Research 48, n.º 7 (21 de fevereiro de 2020): e39-e39. http://dx.doi.org/10.1093/nar/gkaa087.
Texto completo da fonteGómez-Marín, Carlos, Juan J. Tena, Rafael D. Acemel, Macarena López-Mayorga, Silvia Naranjo, Elisa de la Calle-Mustienes, Ignacio Maeso et al. "Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders". Proceedings of the National Academy of Sciences 112, n.º 24 (1 de junho de 2015): 7542–47. http://dx.doi.org/10.1073/pnas.1505463112.
Texto completo da fonteShah, Maryam, Arsalan Riaz e Faisal Khan. "Abstract 6338: Higher-resolution protein interaction networks for precision medicine: A case for drug repurposing in head and neck cancer". Cancer Research 82, n.º 12_Supplement (15 de junho de 2022): 6338. http://dx.doi.org/10.1158/1538-7445.am2022-6338.
Texto completo da fonteBournonville, Clément, Hilde Hénon, Thibaut Dondaine, Christine Delmaire, Stephanie Bombois, Anne-Marie Mendyk, Charlotte Cordonnier et al. "Identification of a specific functional network altered in poststroke cognitive impairment". Neurology 90, n.º 21 (20 de abril de 2018): e1879-e1888. http://dx.doi.org/10.1212/wnl.0000000000005553.
Texto completo da fonteDepierre, David, Charlène Perrois, Naomi Schickele, Priscillia Lhoumaud, Mahdia Abdi-Galab, Olivier Fosseprez, Alexandre Heurteau, Raphaël Margueron e Olivier Cuvier. "Chromatin in 3D distinguishes dMes-4/NSD and Hypb/dSet2 in protecting genes from H3K27me3 silencing". Life Science Alliance 6, n.º 11 (8 de setembro de 2023): e202302038. http://dx.doi.org/10.26508/lsa.202302038.
Texto completo da fonteVidal, Miguel. "Polycomb Assemblies Multitask to Regulate Transcription". Epigenomes 3, n.º 2 (20 de junho de 2019): 12. http://dx.doi.org/10.3390/epigenomes3020012.
Texto completo da fonteCoetzee, Gerhard A. "Understanding Non-Mendelian Genetic Risk". Current Genomics 20, n.º 5 (3 de dezembro de 2019): 322–24. http://dx.doi.org/10.2174/1389202920666191018085511.
Texto completo da fonteWu, Ziyan, Meng Cao, Xin Di, Kai Wu, Yu Gao e Xiaobo Li. "Regional Topological Aberrances of White Matter- and Gray Matter-Based Functional Networks for Attention Processing May Foster Traumatic Brain Injury-Related Attention Deficits in Adults". Brain Sciences 12, n.º 1 (24 de dezembro de 2021): 16. http://dx.doi.org/10.3390/brainsci12010016.
Texto completo da fonteGoudarzi, Shervin, Meghana Pagadala, Adam Klie, James V. Talwar e Hannah Carter. "Epigenetic germline variants predict cancer prognosis and risk and distribute uniquely in topologically associating domains". F1000Research 12 (1 de setembro de 2023): 1083. http://dx.doi.org/10.12688/f1000research.139476.1.
Texto completo da fonteRoversi, Pietro, Lucia Marti, Alessandro T. Caputo, Dominic S. Alonzi, Johan C. Hill, Kyle C. Dent, Abhinav Kumar et al. "Interdomain conformational flexibility underpins the activity of UGGT, the eukaryotic glycoprotein secretion checkpoint". Proceedings of the National Academy of Sciences 114, n.º 32 (24 de julho de 2017): 8544–49. http://dx.doi.org/10.1073/pnas.1703682114.
Texto completo da fonteChakrabarty, Broto, e Nita Parekh. "Sequence and Structure-Based Analyses of Human Ankyrin Repeats". Molecules 27, n.º 2 (10 de janeiro de 2022): 423. http://dx.doi.org/10.3390/molecules27020423.
Texto completo da fonteMei, Shufang, Juntao Ke, Jianbo Tian, Pingting Ying, Nan Yang, Xiaoyang Wang, Danyi Zou et al. "A functional variant in the boundary of a topological association domain is associated with pancreatic cancer risk". Molecular Carcinogenesis 58, n.º 10 (24 de junho de 2019): 1855–62. http://dx.doi.org/10.1002/mc.23077.
Texto completo da fonteSimmons, James R., Ran An, Bright Amankwaa, Shannon Zayac, Justin Kemp e Mariano Labrador. "Phosphorylated histone variant γH2Av is associated with chromatin insulators in Drosophila". PLOS Genetics 18, n.º 10 (5 de outubro de 2022): e1010396. http://dx.doi.org/10.1371/journal.pgen.1010396.
Texto completo da fonteMalkin, A. J., A. McPherson e P. D. Gershon. "Structure of Intracellular Mature Vaccinia Virus Visualized by In Situ Atomic Force Microscopy". Journal of Virology 77, n.º 11 (1 de junho de 2003): 6332–40. http://dx.doi.org/10.1128/jvi.77.11.6332-6340.2003.
Texto completo da fonteZhao, Lingyu, Chuhong He e Xiaorong Zhu. "A Fault Diagnosis Method for 5G Cellular Networks Based on Knowledge and Data Fusion". Sensors 24, n.º 2 (9 de janeiro de 2024): 401. http://dx.doi.org/10.3390/s24020401.
Texto completo da fontePandey, Karran, Joy Merwin Monteiro e Vijay Natarajan. "An Integrated Geometric and Topological Approach for the Identification and Visual Analysis of Rossby Wave Packets". Monthly Weather Review 148, n.º 8 (9 de julho de 2020): 3139–55. http://dx.doi.org/10.1175/mwr-d-20-0014.1.
Texto completo da fontePapanicolaou, Natali, e Alessandro Bonetti. "The New Frontier of Functional Genomics: From Chromatin Architecture and Noncoding RNAs to Therapeutic Targets". SLAS DISCOVERY: Advancing the Science of Drug Discovery 25, n.º 6 (2 de junho de 2020): 568–80. http://dx.doi.org/10.1177/2472555220926158.
Texto completo da fonteMishra, Bharat, Nilesh Kumar e M. Shahid Mukhtar. "Systems Biology and Machine Learning in Plant–Pathogen Interactions". Molecular Plant-Microbe Interactions® 32, n.º 1 (janeiro de 2019): 45–55. http://dx.doi.org/10.1094/mpmi-08-18-0221-fi.
Texto completo da fonteJasnovidova, Olga, Tomas Klumpler, Karel Kubicek, Sergei Kalynych, Pavel Plevka e Richard Stefl. "Structure and dynamics of the RNAPII CTDsome with Rtt103". Proceedings of the National Academy of Sciences 114, n.º 42 (4 de outubro de 2017): 11133–38. http://dx.doi.org/10.1073/pnas.1712450114.
Texto completo da fonteWang, Daifeng, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Fabio C. P. Navarro, Declan Clarke et al. "Comprehensive functional genomic resource and integrative model for the human brain". Science 362, n.º 6420 (13 de dezembro de 2018): eaat8464. http://dx.doi.org/10.1126/science.aat8464.
Texto completo da fonteDing, Shilei, Halima Medjahed, Jérémie Prévost, Mathieu Coutu, Shi-Hua Xiang e Andrés Finzi. "Lineage-Specific Differences between the gp120 Inner Domain Layer 3 of Human Immunodeficiency Virus and That of Simian Immunodeficiency Virus". Journal of Virology 90, n.º 22 (17 de agosto de 2016): 10065–73. http://dx.doi.org/10.1128/jvi.01215-16.
Texto completo da fonteTorchia, Jonathan, Mital Bhakta, Cory Padilla, Meredith L. Carpenter, Philip Uren e Lisa Munding. "Abstract LB287: VariLink: A rapid, high-resolution proximity ligation method for the detection of structural variants and chromatin topology features in cancer". Cancer Research 84, n.º 7_Supplement (5 de abril de 2024): LB287. http://dx.doi.org/10.1158/1538-7445.am2024-lb287.
Texto completo da fonteGrob, Stefan. "Three-dimensional chromosome organization in flowering plants". Briefings in Functional Genomics 19, n.º 2 (março de 2020): 83–91. http://dx.doi.org/10.1093/bfgp/elz024.
Texto completo da fonteTutino, Vincent M., Cathleen C. Kuo, Naval Avasthi, Hamid H. Rai, Muhammad Waqas, Adnan H. Siddiqui, James N. Jarvis e Kerry E. Poppenberg. "Chromatin architecture around stroke haplotypes provides evidence that genetic risk is conferred through vascular cells". Epigenomics 14, n.º 5 (março de 2022): 243–59. http://dx.doi.org/10.2217/epi-2021-0307.
Texto completo da fonteSoibam, Benjamin. "Association between Triplex-Forming Sites of Cardiac Long Noncoding RNA GATA6-AS1 and Chromatin Organization". Non-Coding RNA 8, n.º 3 (1 de junho de 2022): 41. http://dx.doi.org/10.3390/ncrna8030041.
Texto completo da fonteLee, Hanjun, Ioanna-Maria Gkotinakou, Badri Krishnan, Nicholas J. Dyson, Michael S. Lawrence e Ioannis Sanidas. "Abstract 1648: RB represses cohesin-dependent loop formation and activates E2F-independent transcription". Cancer Research 84, n.º 6_Supplement (22 de março de 2024): 1648. http://dx.doi.org/10.1158/1538-7445.am2024-1648.
Texto completo da fonteKirsanova, E., B. Heringstad, A. Lewandowska‐Sabat e I. Olsaker. "Identification of candidate genes affecting chronic subclinical mastitis in Norwegian Red cattle: combining genome‐wide association study, topologically associated domains and pathway enrichment analysis". Animal Genetics 51, n.º 1 (6 de dezembro de 2019): 22–31. http://dx.doi.org/10.1111/age.12886.
Texto completo da fonteWang, Yi, Pavanjeet Kaur, Zhen-Yu J. Sun, Mostafa A. Elbahnasawy, Zahra Hayati, Zhi-Song Qiao, Nhat N. Bui et al. "Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state". Proceedings of the National Academy of Sciences 116, n.º 45 (17 de outubro de 2019): 22556–66. http://dx.doi.org/10.1073/pnas.1912427116.
Texto completo da fonteCapon, Daniel J., Nelson L. Chan, Larisa Troitskaya, Marina Fomin, Ursula Edman, Brendon Frank, Benjamin Z. Capon et al. "Abstract 2730: Beyond antibodies and CAR-T: Topologically-engineered, super-dimeric antibody-like molecules with dual Fc domains for trispecific, bivalent targeting of CD19, CD20, and Fcgamma receptors". Cancer Research 84, n.º 6_Supplement (22 de março de 2024): 2730. http://dx.doi.org/10.1158/1538-7445.am2024-2730.
Texto completo da fonteVasquez, Paula A., Caitlin Hult, David Adalsteinsson, Josh Lawrimore, Mark G. Forest e Kerry Bloom. "Entropy gives rise to topologically associating domains". Nucleic Acids Research 44, n.º 12 (2 de junho de 2016): 5540–49. http://dx.doi.org/10.1093/nar/gkw510.
Texto completo da fonteCiabrelli, Filippo, e Giacomo Cavalli. "Chromatin-Driven Behavior of Topologically Associating Domains". Journal of Molecular Biology 427, n.º 3 (fevereiro de 2015): 608–25. http://dx.doi.org/10.1016/j.jmb.2014.09.013.
Texto completo da fonteMa, Jingzhen, Qun Sun, Zhao Zhou, Bowei Wen e Shaomei Li. "A Multi-Scale Residential Areas Matching Method Considering Spatial Neighborhood Features". ISPRS International Journal of Geo-Information 11, n.º 6 (31 de maio de 2022): 331. http://dx.doi.org/10.3390/ijgi11060331.
Texto completo da fonteMoronta-Gines, Macarena, Thomas R. H. van Staveren e Kerstin S. Wendt. "One ring to bind them – Cohesin’s interaction with chromatin fibers". Essays in Biochemistry 63, n.º 1 (22 de março de 2019): 167–76. http://dx.doi.org/10.1042/ebc20180064.
Texto completo da fonteSzabo, Quentin, Frédéric Bantignies e Giacomo Cavalli. "Principles of genome folding into topologically associating domains". Science Advances 5, n.º 4 (abril de 2019): eaaw1668. http://dx.doi.org/10.1126/sciadv.aaw1668.
Texto completo da fonteDekker, Job, e Edith Heard. "Structural and functional diversity of Topologically Associating Domains". FEBS Letters 589, n.º 20PartA (5 de setembro de 2015): 2877–84. http://dx.doi.org/10.1016/j.febslet.2015.08.044.
Texto completo da fonteStevens, Claire, Leonardo Gonzalez-Smith, Huan Cao e Suhn K. Rhie. "Abstract 7013: Methyl-Micro-C: simultaneous high-resolution characterization of three-dimensional chromatin structure and the DNA methylome". Cancer Research 84, n.º 6_Supplement (22 de março de 2024): 7013. http://dx.doi.org/10.1158/1538-7445.am2024-7013.
Texto completo da fonteViny, Aaron D., Robert L. Bowman, Yu Liu, Vincent-Philippe Lavallee, Shira Eisman, Wenbin Xiao, Benjamin H. Durham et al. "Stag2 Regulates Hematopoietic Differentiation and Self-Renewal through Alterations in Gene Expression and Topological Control". Blood 134, Supplement_1 (13 de novembro de 2019): 279. http://dx.doi.org/10.1182/blood-2019-123464.
Texto completo da fonteBayard, Quentin, Pierre Cordier, Camille Péneau, Sandrine Imbeaud, Theo Z. Hirsch, Victor Renault, Jean-Charles Nault et al. "Abstract LB545: Structure, dynamics and consequences of replication stress-induced structural variants in hepatocellular carcinoma". Cancer Research 82, n.º 12_Supplement (15 de junho de 2022): LB545. http://dx.doi.org/10.1158/1538-7445.am2022-lb545.
Texto completo da fonteAtkin, Naomi, Heather Raimer e Yuh-Hwa Wang. "Broken by the Cut: A Journey into the Role of Topoisomerase II in DNA Fragility". Genes 10, n.º 10 (12 de outubro de 2019): 791. http://dx.doi.org/10.3390/genes10100791.
Texto completo da fonteWang, Hengtao, Meiling Liang, Jiajia Wu, Xia Peng, Kuangzheng Zhu e Zhuqing Zheng. "Strategies of Integrated Analysis of ATAC-seq and RNA-seq Data". Science of Advanced Materials 16, n.º 1 (1 de janeiro de 2024): 130–40. http://dx.doi.org/10.1166/sam.2024.4599.
Texto completo da fonteStilianoudakis, Spiro C., Maggie A. Marshall e Mikhail G. Dozmorov. "preciseTAD: a transfer learning framework for 3D domain boundary prediction at base-pair resolution". Bioinformatics 38, n.º 3 (6 de novembro de 2021): 621–30. http://dx.doi.org/10.1093/bioinformatics/btab743.
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