Artigos de revistas sobre o tema "Chromatin loop extrusion"
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Racko, Dusan, Fabrizio Benedetti, Dimos Goundaroulis e Andrzej Stasiak. "Chromatin Loop Extrusion and Chromatin Unknotting". Polymers 10, n.º 10 (11 de outubro de 2018): 1126. http://dx.doi.org/10.3390/polym10101126.
Texto completo da fonteMatityahu, Avi, e Itay Onn. "Hit the brakes – a new perspective on the loop extrusion mechanism of cohesin and other SMC complexes". Journal of Cell Science 134, n.º 1 (1 de janeiro de 2021): jcs247577. http://dx.doi.org/10.1242/jcs.247577.
Texto completo da fonteNuebler, Johannes, Geoffrey Fudenberg, Maxim Imakaev, Nezar Abdennur e Leonid A. Mirny. "Chromatin organization by an interplay of loop extrusion and compartmental segregation". Proceedings of the National Academy of Sciences 115, n.º 29 (2 de julho de 2018): E6697—E6706. http://dx.doi.org/10.1073/pnas.1717730115.
Texto completo da fonteKabirova, Evelyn, Artem Nurislamov, Artem Shadskiy, Alexander Smirnov, Andrey Popov, Pavel Salnikov, Nariman Battulin e Veniamin Fishman. "Function and Evolution of the Loop Extrusion Machinery in Animals". International Journal of Molecular Sciences 24, n.º 5 (6 de março de 2023): 5017. http://dx.doi.org/10.3390/ijms24055017.
Texto completo da fonteMaji, Ajoy, Ranjith Padinhateeri e Mithun K. Mitra. "Loop Extrusion in Chromatin: A Question of Time!" Biophysical Journal 118, n.º 3 (fevereiro de 2020): 63a. http://dx.doi.org/10.1016/j.bpj.2019.11.522.
Texto completo da fonteBrandão, Hugo B., Payel Paul, Aafke A. van den Berg, David Z. Rudner, Xindan Wang e Leonid A. Mirny. "RNA polymerases as moving barriers to condensin loop extrusion". Proceedings of the National Academy of Sciences 116, n.º 41 (23 de setembro de 2019): 20489–99. http://dx.doi.org/10.1073/pnas.1907009116.
Texto completo da fonteYamamoto, Tetsuya, Takahiro Sakaue e Helmut Schiessel. "Slow chromatin dynamics enhances promoter accessibility to transcriptional condensates". Nucleic Acids Research 49, n.º 9 (22 de abril de 2021): 5017–27. http://dx.doi.org/10.1093/nar/gkab275.
Texto completo da fonteBonato, A., C. A. Brackley, J. Johnson, D. Michieletto e D. Marenduzzo. "Chromosome compaction and chromatin stiffness enhance diffusive loop extrusion by slip-link proteins". Soft Matter 16, n.º 9 (2020): 2406–14. http://dx.doi.org/10.1039/c9sm01875a.
Texto completo da fonteKolbin, Daniel, Benjamin L. Walker, Caitlin Hult, John Donoghue Stanton, David Adalsteinsson, M. Gregory Forest e Kerry Bloom. "Polymer Modeling Reveals Interplay between Physical Properties of Chromosomal DNA and the Size and Distribution of Condensin-Based Chromatin Loops". Genes 14, n.º 12 (9 de dezembro de 2023): 2193. http://dx.doi.org/10.3390/genes14122193.
Texto completo da fonteRusková, Renáta, e Dušan Račko. "Entropic Competition between Supercoiled and Torsionally Relaxed Chromatin Fibers Drives Loop Extrusion through Pseudo-Topologically Bound Cohesin". Biology 10, n.º 2 (7 de fevereiro de 2021): 130. http://dx.doi.org/10.3390/biology10020130.
Texto completo da fonteDavidson, Iain F., Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz e Jan-Michael Peters. "DNA loop extrusion by human cohesin". Science 366, n.º 6471 (21 de novembro de 2019): 1338–45. http://dx.doi.org/10.1126/science.aaz3418.
Texto completo da fonteBrahmachari, Sumitabha, e John F. Marko. "Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures". Proceedings of the National Academy of Sciences 116, n.º 50 (22 de novembro de 2019): 24956–65. http://dx.doi.org/10.1073/pnas.1906355116.
Texto completo da fonteYamamoto, Tetsuya, e Helmut Schiessel. "Dilution of contact frequency between superenhancers by loop extrusion at interfaces". Soft Matter 15, n.º 38 (2019): 7635–43. http://dx.doi.org/10.1039/c9sm01454c.
Texto completo da fonteZhang, Xuefei, Yu Zhang, Zhaoqing Ba, Nia Kyritsis, Rafael Casellas e Frederick W. Alt. "Fundamental roles of chromatin loop extrusion in antibody class switching". Nature 575, n.º 7782 (30 de outubro de 2019): 385–89. http://dx.doi.org/10.1038/s41586-019-1723-0.
Texto completo da fonteNuebler, Johannes, Geoffrey Fudenberg, Maxim Imakaev, Nezar Abdennur e Leonid Mirny. "Chromatin Organization by an Interplay of Loop Extrusion and Compartmental Segregation". Biophysical Journal 114, n.º 3 (fevereiro de 2018): 30a. http://dx.doi.org/10.1016/j.bpj.2017.11.211.
Texto completo da fonteMatthews, Nicholas E., e Rob White. "Chromatin Architecture in the Fly: Living without CTCF/Cohesin Loop Extrusion?" BioEssays 41, n.º 9 (julho de 2019): 1900048. http://dx.doi.org/10.1002/bies.201900048.
Texto completo da fonteOchs, Fena, Charlotte Green, Aleksander Tomasz Szczurek, Lior Pytowski, Sofia Kolesnikova, Jill Brown, Daniel Wolfram Gerlich, Veronica Buckle, Lothar Schermelleh e Kim Ashley Nasmyth. "Sister chromatid cohesion is mediated by individual cohesin complexes". Science 383, n.º 6687 (8 de março de 2024): 1122–30. http://dx.doi.org/10.1126/science.adl4606.
Texto completo da fonteKoide, Hiroki, Noriyuki Kodera, Shveta Bisht, Shoji Takada e Tsuyoshi Terakawa. "Modeling of DNA binding to the condensin hinge domain using molecular dynamics simulations guided by atomic force microscopy". PLOS Computational Biology 17, n.º 7 (30 de julho de 2021): e1009265. http://dx.doi.org/10.1371/journal.pcbi.1009265.
Texto completo da fonteDekker, Bastiaan, e Job Dekker. "Regulation of the mitotic chromosome folding machines". Biochemical Journal 479, n.º 20 (21 de outubro de 2022): 2153–73. http://dx.doi.org/10.1042/bcj20210140.
Texto completo da fonteGhosh, Surya K., e Daniel Jost. "Genome organization via loop extrusion, insights from polymer physics models". Briefings in Functional Genomics 19, n.º 2 (8 de novembro de 2019): 119–27. http://dx.doi.org/10.1093/bfgp/elz023.
Texto completo da fonteCutts, Erin E., e Alessandro Vannini. "Condensin complexes: understanding loop extrusion one conformational change at a time". Biochemical Society Transactions 48, n.º 5 (2 de outubro de 2020): 2089–100. http://dx.doi.org/10.1042/bst20200241.
Texto completo da fontePhipps, Jamie, e Karine Dubrana. "DNA Repair in Space and Time: Safeguarding the Genome with the Cohesin Complex". Genes 13, n.º 2 (22 de janeiro de 2022): 198. http://dx.doi.org/10.3390/genes13020198.
Texto completo da fonteZhang, Yu, Xuefei Zhang, Zhaoqing Ba, Zhuoyi Liang, Edward W. Dring, Hongli Hu, Jiangman Lou et al. "The fundamental role of chromatin loop extrusion in physiological V(D)J recombination". Nature 573, n.º 7775 (11 de setembro de 2019): 600–604. http://dx.doi.org/10.1038/s41586-019-1547-y.
Texto completo da fonteThomas, Naiju, Timothy E. Reznicek, Erez Lieberman Aiden, M. Jordan Rowley, Eric Wagner e Guy Nir. "Abstract 1699: Defining the impact of aberrant transcription on the chromatin structure". Cancer Research 84, n.º 6_Supplement (22 de março de 2024): 1699. http://dx.doi.org/10.1158/1538-7445.am2024-1699.
Texto completo da fonteKorsak, Sevastianos, e Dariusz Plewczynski. "LoopSage: An energy-based Monte Carlo approach for the loop extrusion modeling of chromatin". Methods 223 (março de 2024): 106–17. http://dx.doi.org/10.1016/j.ymeth.2024.01.015.
Texto completo da fonteZhang, Xuefei, Hye Suk Yoon, Aimee M. Chapdelaine-Williams, Nia Kyritsis e Frederick W. Alt. "Physiological role of the 3′IgH CBEs super-anchor in antibody class switching". Proceedings of the National Academy of Sciences 118, n.º 3 (13 de janeiro de 2021): e2024392118. http://dx.doi.org/10.1073/pnas.2024392118.
Texto completo da fonteConte, Mattia, Andrea M. Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Mario Nicodemi, Tommaso Matteuzzi e Francesca Vercellone. "Polymer Models of Chromatin Imaging Data in Single Cells". Algorithms 15, n.º 9 (16 de setembro de 2022): 330. http://dx.doi.org/10.3390/a15090330.
Texto completo da fonteBrandão, Hugo B., Johanna Gassler, Maxim Imakaev, Ilya M. Flyamer, Sabrina Ladstätter, Wendy A. Bickmore, Jan-Michael Peters, Kikuë Tachibana-Konwalski e Leonid A. Mirny. "A Mechanism of Cohesin-Dependent Loop Extrusion Organizes Mammalian Chromatin Structure in the Developing Embryo". Biophysical Journal 114, n.º 3 (fevereiro de 2018): 255a. http://dx.doi.org/10.1016/j.bpj.2017.11.1417.
Texto completo da fonteSanborn, Adrian L., Suhas S. P. Rao, Su-Chen Huang, Neva C. Durand, Miriam H. Huntley, Andrew I. Jewett, Ivan D. Bochkov et al. "Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes". Proceedings of the National Academy of Sciences 112, n.º 47 (23 de outubro de 2015): E6456—E6465. http://dx.doi.org/10.1073/pnas.1518552112.
Texto completo da fonteConte, Mattia, Andrea Esposito, Francesca Vercellone, Alex Abraham e Simona Bianco. "Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling". International Journal of Molecular Sciences 24, n.º 4 (11 de fevereiro de 2023): 3660. http://dx.doi.org/10.3390/ijms24043660.
Texto completo da fonteZhang, Yu, Xuefei Zhang, Zhuoyi Liang, Zhaoqing Ba, Eddie Dring, Jeffrey Zurita, Aviva Presser Aiden, Erez Lieberman Aiden e Frederick W. Alt. "Physiological V(D)J Recombination is Mediated by RAG Scanning of Loop-extruded Chromatin". Journal of Immunology 202, n.º 1_Supplement (1 de maio de 2019): 123.18. http://dx.doi.org/10.4049/jimmunol.202.supp.123.18.
Texto completo da fonteKhabarova, A. A., A. S. Ryzhkova e N. R. Battulin. "Reorganisation of chromatin during erythroid differentiation". Vavilov Journal of Genetics and Breeding 23, n.º 1 (26 de fevereiro de 2019): 95–99. http://dx.doi.org/10.18699/vj19.467.
Texto completo da fonteJeong, Mira, Xiangfan Huang, Xiaotian Zhang, Jianzhong Su, Muhammad S. Shamim, Ivan D. Bochkov, Jaime M. Reyes et al. "Large DNA Methylation Canyons Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity". Blood 132, Supplement 1 (29 de novembro de 2018): 534. http://dx.doi.org/10.1182/blood-2018-99-119485.
Texto completo da fonteRacko, Dusan, Fabrizio Benedetti, Julien Dorier e Andrzej Stasiak. "Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes". Nucleic Acids Research 46, n.º 4 (13 de novembro de 2017): 1648–60. http://dx.doi.org/10.1093/nar/gkx1123.
Texto completo da fonteYin, Zihang, Shuang Cui, Song Xue, Yufan Xie, Yefan Wang, Chengling Zhao, Zhiyu Zhang et al. "Identification of Two Subsets of Subcompartment A1 Associated with High Transcriptional Activity and Frequent Loop Extrusion". Biology 12, n.º 8 (27 de julho de 2023): 1058. http://dx.doi.org/10.3390/biology12081058.
Texto completo da fonteLuppino, Jennifer M., Andrew Field, Son C. Nguyen, Daniel S. Park, Parisha P. Shah, Richard J. Abdill, Yemin Lan et al. "Co-depletion of NIPBL and WAPL balance cohesin activity to correct gene misexpression". PLOS Genetics 18, n.º 11 (30 de novembro de 2022): e1010528. http://dx.doi.org/10.1371/journal.pgen.1010528.
Texto completo da fonteVitriolo, Alessandro, Michele Gabriele e Giuseppe Testa. "From enhanceropathies to the epigenetic manifold underlying human cognition". Human Molecular Genetics 28, R2 (14 de agosto de 2019): R226—R234. http://dx.doi.org/10.1093/hmg/ddz196.
Texto completo da fonteOrlandini, Enzo, Davide Marenduzzo e Davide Michieletto. "Synergy of topoisomerase and structural-maintenance-of-chromosomes proteins creates a universal pathway to simplify genome topology". Proceedings of the National Academy of Sciences 116, n.º 17 (8 de abril de 2019): 8149–54. http://dx.doi.org/10.1073/pnas.1815394116.
Texto completo da fonteMao, Albert, Carrie Chen, Stephanie Portillo-Ledesma e Tamar Schlick. "Effect of Single-Residue Mutations on CTCF Binding to DNA: Insights from Molecular Dynamics Simulations". International Journal of Molecular Sciences 24, n.º 7 (29 de março de 2023): 6395. http://dx.doi.org/10.3390/ijms24076395.
Texto completo da fonteAiden, Erez Lieberman. "Three-D Codes in the Human Genome". Blood 134, Supplement_1 (13 de novembro de 2019): SCI—50—SCI—50. http://dx.doi.org/10.1182/blood-2019-121474.
Texto completo da fonteSubramanian, Vijayalakshmi V. "Preprint Highlight: Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms". Molecular Biology of the Cell 34, n.º 5 (1 de maio de 2023). http://dx.doi.org/10.1091/mbc.p23-03-0010.
Texto completo da fonteBailey, Mary Lou P., Ivan Surovtsev, Jessica F. Williams, Hao Yan, Tianyu Yuan, Kevin Li, Katherine Duseau, Simon G. J. Mochrie e Megan C. King. "Loops and the activity of loop extrusion factors constrain chromatin dynamics". Molecular Biology of the Cell, 26 de abril de 2023. http://dx.doi.org/10.1091/mbc.e23-04-0119.
Texto completo da fonteYan, Hao, Ivan Surovtsev, Jessica F. Williams, Mary Lou P. Bailey, Megan C. King e Simon G. J. Mochrie. "Extrusion of chromatin loops by a composite loop extrusion factor". Physical Review E 104, n.º 2 (23 de agosto de 2021). http://dx.doi.org/10.1103/physreve.104.024414.
Texto completo da fonteMatityahu, Avi, e Itay Onn. "Hit the brakes – a new perspective on the loop extrusion mechanism of cohesin and other SMC complexes". Journal of Cell Science 134, n.º 1 (1 de janeiro de 2021). http://dx.doi.org/10.1242/jcs.247577.
Texto completo da fonte"Chromatin Loop Extrusion Regulates Neutrophil Differentiation". Cancer Discovery, 2024. http://dx.doi.org/10.1158/2159-8290.cd-rw2024-032.
Texto completo da fonteBanigan, Edward J., Aafke A. van den Berg, Hugo B. Brandão, John F. Marko e Leonid A. Mirny. "Chromosome organization by one-sided and two-sided loop extrusion". eLife 9 (6 de abril de 2020). http://dx.doi.org/10.7554/elife.53558.
Texto completo da fonteGolov, Arkadiy K., Anastasia V. Golova, Alexey A. Gavrilov e Sergey V. Razin. "Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion". Epigenetics & Chromatin 14, n.º 1 (28 de julho de 2021). http://dx.doi.org/10.1186/s13072-021-00411-w.
Texto completo da fonteGolfier, Stefan, Thomas Quail, Hiroshi Kimura e Jan Brugués. "Cohesin and condensin extrude DNA loops in a cell cycle-dependent manner". eLife 9 (12 de maio de 2020). http://dx.doi.org/10.7554/elife.53885.
Texto completo da fonteHigashi, Torahiko L., Georgii Pobegalov, Minzhe Tang, Maxim I. Molodtsov e Frank Uhlmann. "A Brownian ratchet model for DNA loop extrusion by the cohesin complex". eLife 10 (26 de julho de 2021). http://dx.doi.org/10.7554/elife.67530.
Texto completo da fonteChan, Brian, e Michael Rubinstein. "Activity-driven chromatin organization during interphase: Compaction, segregation, and entanglement suppression". Proceedings of the National Academy of Sciences 121, n.º 21 (16 de maio de 2024). http://dx.doi.org/10.1073/pnas.2401494121.
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