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Artykuły w czasopismach na temat „Yeast two-hybrid”

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Autor: Grafiati

Data publikacji: 4 czerwca 2021

Data aktualizacji: 6 lipca 2024

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1

NISHIHARA, Tsutomu, i Jun-ichi NISHIKAWA. "Bioassay for endocrine disruptors by using yeast two-hybrid system". Folia Pharmacologica Japonica 118, nr 3 (2001): 203–10. http://dx.doi.org/10.1254/fpj.118.203.

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2

Hughes-Davies, L. "The Yeast Two-Hybrid System". Journal of Medical Genetics 35, nr 8 (1.08.1998): 704. http://dx.doi.org/10.1136/jmg.35.8.704.

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3

Szeberényi, József. "The yeast two-hybrid system". Biochemistry and Molecular Biology Education 34, nr 4 (lipiec 2006): 306–7. http://dx.doi.org/10.1002/bmb.2006.494034042638.

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4

NAKAMURA, HIDEMITSU. "Diversification of yeast two-hybrid system." Kagaku To Seibutsu 37, nr 4 (1999): 249–50. http://dx.doi.org/10.1271/kagakutoseibutsu1962.37.249.

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5

Koegl, M., i P. Uetz. "Improving yeast two-hybrid screening systems". Briefings in Functional Genomics and Proteomics 6, nr 4 (22.01.2008): 302–12. http://dx.doi.org/10.1093/bfgp/elm035.

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6

Reece-Hoyes, John S., i Albertha J. M. Walhout. "Generating Yeast Two-Hybrid Bait Strains". Cold Spring Harbor Protocols 2018, nr 7 (lipiec 2018): pdb.prot094979. http://dx.doi.org/10.1101/pdb.prot094979.

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7

Reece-Hoyes, John S., i Albertha J. M. Walhout. "Gateway-Compatible Yeast One-Hybrid and Two-Hybrid Assays". Cold Spring Harbor Protocols 2018, nr 7 (lipiec 2018): pdb.top094953. http://dx.doi.org/10.1101/pdb.top094953.

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8

Serebriiskii, Ilya G., Rui Fang, Ekaterina Latypova, Richard Hopkins, Charles Vinson, J. Keith Joung i Erica A. Golemis. "A Combined Yeast/Bacteria Two-hybrid System". Molecular & Cellular Proteomics 4, nr 6 (20.03.2005): 819–26. http://dx.doi.org/10.1074/mcp.t500005-mcp200.

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9

Van Criekinge, Wim, i Rudi Beyaert. "Yeast two-hybrid: State of the art". Biological Procedures Online 2, nr 1 (październik 1999): 1–38. http://dx.doi.org/10.1251/bpo16.

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10

Uetz, Peter. "Editorial for “The Yeast two-hybrid system”". Methods 58, nr 4 (grudzień 2012): 315–16. http://dx.doi.org/10.1016/j.ymeth.2013.01.001.

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11

Lawit, Shai J., Kevin O’Grady, William B. Gurley i Eva Czarnecka-Verner. "Yeast two-hybrid map of Arabidopsis TFIID". Plant Molecular Biology 64, nr 1-2 (6.03.2007): 73–87. http://dx.doi.org/10.1007/s11103-007-9135-1.

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12

Parrish, Jodi R., Keith D. Gulyas i Russell L. Finley. "Yeast two-hybrid contributions to interactome mapping". Current Opinion in Biotechnology 17, nr 4 (sierpień 2006): 387–93. http://dx.doi.org/10.1016/j.copbio.2006.06.006.

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13

McAlister-Henn, Lee, Natalie Gibson i Ellen Panisko. "Applications of the Yeast Two-Hybrid System". Methods 19, nr 2 (październik 1999): 330–37. http://dx.doi.org/10.1006/meth.1999.0860.

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14

Eustace, Rosanne, i R. J. Thornton. "Selective hybridization of wine yeasts for higher yields of glycerol". Canadian Journal of Microbiology 33, nr 2 (1.02.1987): 112–17. http://dx.doi.org/10.1139/m87-019.

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Wines that are lacking in body may be improved by the presence of greater amounts of glycerol. Wine yeast strains vary in their ability to produce glycerol. A programme of hybridizing yeast strains while selecting for increased production of glycerol was undertaken. Three generations of hybridization resulted in yeast strains which produced 10–11 g glycerol/L compared with 3.0–6.6 g/L produced by the wine yeast strains of the original breeding stock. Industrial-scale winemaking confirmed the ability of two hybrid strains to produce similar amounts of glycerol to those observed in laboratory-scale fermentations. The activity of the enzyme glycerol-3-phosphate dehydrogenase was measured in crude extracts of two breeding stock wine yeasts and in two final generation hybrid strains. The observed activities were lower in the products of the hybridization programme than in the original wine yeast strains. Two alternative explanations are suggested. (i) Selective hybridization may select for the alleles of the gene which codes for an alcohol dehydrogenase I isozyme which has a lower activity resulting in increased glycerol production. (ii) Phospholipid synthesis is reduced and the glycerol-3-phosphate, which is the major precursor of phospholipids in yeasts, accumulates as glycerol.

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15

Luo, Ying, Anna Batalao, Helen Zhou i Li Zhu. "Mammalian Two-Hybrid System: A Complementary Approach to the Yeast Two-Hybrid System". BioTechniques 22, nr 2 (luty 1997): 350–52. http://dx.doi.org/10.2144/97222pf02.

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16

Saito, Youhei, Takanobu Nakagawa, Ayana Kakihana, Yoshia Nakamura, Tomomi Nabika, Michihiro Kasai, Mai Takamori i in. "Yeast Two-Hybrid and One-Hybrid Screenings Identify Regulators ofhsp70Gene Expression". Journal of Cellular Biochemistry 117, nr 9 (10.03.2016): 2109–17. http://dx.doi.org/10.1002/jcb.25517.

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17

IWATA, Nobuhisa. "Molecular Cloning Using the Yeast Two-hybrid System". Japanese Journal of Thrombosis and Hemostasis 9, nr 2 (1998): 126–32. http://dx.doi.org/10.2491/jjsth.9.126.

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18

Chen, Yu-Chi, Seesandra Venkatappa Rajagopala, Thorsten Stellberger i Peter Uetz. "Exhaustive benchmarking of the yeast two-hybrid system". Nature Methods 7, nr 9 (wrzesień 2010): 667–68. http://dx.doi.org/10.1038/nmeth0910-667.

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19

Parchaliuk, Debra L., Robert D. Kirkpatrick, Sharon L. Simon, Ronald Agatep i R. Daniel Gietz. "Yeast two-hybrid system: part A: screen preparation". Technical Tips Online 4, nr 1 (styczeń 1999): 6–15. http://dx.doi.org/10.1016/s1366-2120(08)70129-6.

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20

Parchaliuk, Debra L., Robert D. Kirkpatrick, Sharon L. Simon, Ronald Agatep i R. Daniel Gietz. "Yeast two-hybrid system: part B—screening procedure". Technical Tips Online 4, nr 1 (styczeń 1999): 30–34. http://dx.doi.org/10.1016/s1366-2120(08)70133-8.

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21

Parchaliuk, Debra L., Robert D. Kirkpatrick, Sharon L. Simon, Ronald Agatep i R. Daniel Gietz. "Yeast two-hybrid system: part C—characterizing positives". Technical Tips Online 4, nr 1 (styczeń 1999): 35–44. http://dx.doi.org/10.1016/s1366-2120(08)70134-x.

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22

Hollingsworth, Robert, i Julia H. White. "Target discovery using the yeast two-hybrid system". Drug Discovery Today: TARGETS 3, nr 3 (czerwiec 2004): 97–103. http://dx.doi.org/10.1016/s1741-8372(04)02414-4.

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23

Lin, Guiting, Zhiwen Zhang, Tong Zang, Dianqi Xin, Zhijie Chang i Yinglu Guo. "Interaction of hTCF4 by yeast two-hybrid system". Chinese Science Bulletin 45, nr 21 (listopad 2000): 1973–77. http://dx.doi.org/10.1007/bf02909690.

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24

White, M. A. "The yeast two-hybrid system: forward and reverse." Proceedings of the National Academy of Sciences 93, nr 19 (17.09.1996): 10001–3. http://dx.doi.org/10.1073/pnas.93.19.10001.

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25

Lecrenier, Nicolas, Françoise Foury i Andre Goffeau. "Two-hybrid systematic screening of the yeast proteome". BioEssays 20, nr 1 (6.12.1998): 1–5. http://dx.doi.org/10.1002/(sici)1521-1878(199801)20:1<1::aid-bies2>3.0.co;2-y.

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26

Paiano, Aurora, Azzurra Margiotta, Maria De Luca i Cecilia Bucci. "Yeast Two-Hybrid Assay to Identify Interacting Proteins". Current Protocols in Protein Science 95, nr 1 (21.08.2018): e70. http://dx.doi.org/10.1002/cpps.70.

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27

Wendland, Jürgen. "Lager Yeast Comes of Age". Eukaryotic Cell 13, nr 10 (1.08.2014): 1256–65. http://dx.doi.org/10.1128/ec.00134-14.

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ABSTRACTAlcoholic fermentations have accompanied human civilizations throughout our history. Lager yeasts have a several-century-long tradition of providing fresh beer with clean taste. The yeast strains used for lager beer fermentation have long been recognized as hybrids between twoSaccharomycesspecies. We summarize the initial findings on this hybrid nature, the genomics/transcriptomics of lager yeasts, and established targets of strain improvements. Next-generation sequencing has provided fast access to yeast genomes. Its use in population genomics has uncovered many more hybridization events withinSaccharomycesspecies, so that lager yeast hybrids are no longer the exception from the rule. These findings have led us to propose network evolution withinSaccharomycesspecies. This “web of life” recognizes the ability of closely related species to exchange DNA and thus drain from a combined gene pool rather than be limited to a gene pool restricted by speciation. Within the domesticated lager yeasts, two groups, the Saaz and Frohberg groups, can be distinguished based on fermentation characteristics. Recent evidence suggests that these groups share an evolutionary history. We thus propose to refer to the Saaz group asSaccharomyces carlsbergensisand to the Frohberg group asSaccharomyces pastorianusbased on their distinct genomes. New insight into the hybrid nature of lager yeast will provide novel directions for future strain improvement.

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28

Shaghaghi-Moghaddam, Reza, Hoda Jafarizadeh-Malmiri, Parviz Mehdikhani, Sepide Jalalian i Reza Alijanianzadeh. "Screening of the five different wild, traditional and industrial Saccharomyces cerevisiae strains to overproduce bioethanol in the batch submerged fermentation". Zeitschrift für Naturforschung C 73, nr 9-10 (25.09.2018): 361–66. http://dx.doi.org/10.1515/znc-2017-0180.

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Abstract Efforts to produce bioethanol with higher productivity in a batch submerged fermentation were made by evaluating the bioethanol production of the five different strains of Saccharomyces cerevisiae, namely, NCYC 4109 (traditional bakery yeast), SFO6 (industrial yeast), TTCC 2956 (hybrid baking yeast) and two wild yeasts, PTCC 5052 and BY 4743. The bioethanol productivity and kinetic parameters for all five yeasts at constant fermentation conditions, during 72 h, were evaluated and monitored. The obtained results indicated that compared to the wild yeasts, both traditional bakery (NCYC 4109) and industrial (SFO6) yeasts had higher bioethanol productivity (0.9 g/L h). Significant (p<0.05) differences between biomass concentration of NCYC 4109 yeast and those of other yeasts 30 h after start of fermentation, and its high bioethanol concentration (59.19 g/L) and yield over consumed sugars (77.25%) were highlighted among all the studied yeasts. Minimum bioethanol productivity was obtained using yeasts PTCC 5052 (0.7 g/L h) and TTCC 2956 (0.86 g/L h). However, maximum yield over consumed sugar was obtained using the yeast TTCC 2956 (79.41%).

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29

Walhout, Albertha J. M., Simon J. Boulton i Marc Vidal. "Yeast Two-Hybrid Systems and Protein Interaction Mapping Projects for Yeast and Worm". Yeast 1, nr 2 (1.01.2000): 88–94. http://dx.doi.org/10.1155/2000/156745.

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The availability of complete genome sequences necessitates the development of standardized functional assays to analyse the tens of thousands of predicted gene products in high-throughput experimental settings. Such approaches are collectively referred to as ‘functional genomics’. One approach to investigate the properties of a proteome of interest is by systematic analysis of protein–protein interactions. So far, the yeast two-hybrid system is the most commonly used method for large-scale, high-throughput identification of potential protein–protein interactions. Here, we discuss several technical features of variants of the two-hybrid systems in light of data recently obtained from different protein interaction mapping projects for the budding yeast Saccharomyces cerevisiae and the nematode Caenorhabditis elegans.

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30

Walhout, Albertha J. M., Simon J. Boulton i Marc Vidal. "Yeast Two-Hybrid Systems and Protein Interaction Mapping Projects for Yeast and Worm". Yeast 1, nr 2 (2000): 88–94. http://dx.doi.org/10.1002/1097-0061(20000630)17:2<88::aid-yea20>3.0.co;2-y.

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The availability of complete genome sequences necessitates the development of standardized functional assays to analyse the tens of thousands of predicted gene products in high-throughput experimental settings. Such approaches are collectively referred to as ‘functional genomics’. One approach to investigate the properties of a proteome of interest is by systematic analysis of protein–protein interactions. So far, the yeast two-hybrid system is the most commonly used method for large-scale, high-throughput identification of potential protein–protein interactions. Here, we discuss several technical features of variants of the two-hybrid systems in light of data recently obtained from different protein interaction mapping projects for the budding yeastSaccharomyces cerevisiaeand the nematodeCaenorhabditis elegans.

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31

PAN, Xiao. "DETECTION OF MICROCYSTINS BASED ON YEAST TWO-HYBRID SYSTEM". Acta Hydrobiologica Sinica 32, nr 2 (20.11.2008): 201–6. http://dx.doi.org/10.3724/sp.j.1035.2008.00201.

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32

Brückner, Anna, Cécile Polge, Nicolas Lentze, Daniel Auerbach i Uwe Schlattner. "Yeast Two-Hybrid, a Powerful Tool for Systems Biology". International Journal of Molecular Sciences 10, nr 6 (18.06.2009): 2763–88. http://dx.doi.org/10.3390/ijms10062763.

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33

Liu, Ying, Zabeena Merchant, Hao-Ching Hsiao, Kim L. Gonzalez, Kathleen S. Matthews i Sarah E. Bondos. "Media composition influences yeast one- and two-hybrid results". Biological Procedures Online 13, nr 1 (2011): 6. http://dx.doi.org/10.1186/1480-9222-13-6.

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34

Liu, Y., N. T. Woods, D. Kim, M. Sweet, A. N. A. Monteiro i R. Karchin. "Yeast two-hybrid junk sequences contain selected linear motifs". Nucleic Acids Research 39, nr 19 (23.07.2011): e128-e128. http://dx.doi.org/10.1093/nar/gkr600.

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35

Vidalain, Pierre-Olivier, Mike Boxem, Hui Ge, Siming Li i Marc Vidal. "Increasing specificity in high-throughput yeast two-hybrid experiments". Methods 32, nr 4 (kwiecień 2004): 363–70. http://dx.doi.org/10.1016/j.ymeth.2003.10.001.

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36

Rain, Jean-Christophe, Alexandra Cribier, Annabelle Gérard, Stéphane Emiliani i Richard Benarous. "Yeast two-hybrid detection of integrase–host factor interactions". Methods 47, nr 4 (kwiecień 2009): 291–97. http://dx.doi.org/10.1016/j.ymeth.2009.02.002.

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37

Rajagopala, Seesandra V., Patricia Sikorski, J. Harry Caufield, Andrey Tovchigrechko i Peter Uetz. "Studying protein complexes by the yeast two-hybrid system". Methods 58, nr 4 (grudzień 2012): 392–99. http://dx.doi.org/10.1016/j.ymeth.2012.07.015.

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38

Caufield, J. H., Neha Sakhawalkar i Peter Uetz. "A comparison and optimization of yeast two-hybrid systems". Methods 58, nr 4 (grudzień 2012): 317–24. http://dx.doi.org/10.1016/j.ymeth.2012.12.001.

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39

Xin, Xiangbo, Ting Wang, Xinfeng Liu, Guoning Sui, Congfei Jin, Yingwei Yue, Shuping Yang i Hong Guo. "A yeast two-hybrid assay reveals CMYA1 interacting proteins". Comptes Rendus Biologies 340, nr 6-7 (czerwiec 2017): 314–23. http://dx.doi.org/10.1016/j.crvi.2017.06.003.

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40

Cao, Yang, Usha Nair, Kyoko Yasumura-Yorimitsu i Daniel J. Klionsky. "A multipleATGgene knockout strain for yeast two-hybrid analysis". Autophagy 5, nr 5 (lipiec 2009): 699–705. http://dx.doi.org/10.4161/auto.5.5.8382.

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41

Konopka, James. "The Yeast Two-Hybrid System.Paul L. Bartel , Stanley Fields". Quarterly Review of Biology 73, nr 4 (grudzień 1998): 493. http://dx.doi.org/10.1086/420439.

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42

Mehla, Jitender, J. Harry Caufield i Peter Uetz. "Mapping Protein–Protein Interactions Using Yeast Two-Hybrid Assays". Cold Spring Harbor Protocols 2015, nr 5 (maj 2015): pdb.prot086157. http://dx.doi.org/10.1101/pdb.prot086157.

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43

Bhartur, Sheela G., i James R. Goldenring. "Mapping of Ezrin Dimerization Using Yeast Two-Hybrid Screening". Biochemical and Biophysical Research Communications 243, nr 3 (luty 1998): 874–77. http://dx.doi.org/10.1006/bbrc.1998.8196.

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44

Aho, Sirpa, Airi Arffman, Tiina Pummi i Jouni Uitto. "A Novel Reporter GeneMEL1for the Yeast Two-Hybrid System". Analytical Biochemistry 253, nr 2 (listopad 1997): 270–72. http://dx.doi.org/10.1006/abio.1997.2394.

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45

Helmuth, Martin, Wilko Altrock, Tobias M. Böckers, Eckart D. Gundelfinger i Michael R. Kreutz. "An Electrotransfection Protocol for Yeast Two-Hybrid Library Screening". Analytical Biochemistry 293, nr 1 (czerwiec 2001): 149–52. http://dx.doi.org/10.1006/abio.2001.5107.

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46

PAN, Xiao, Ping-Ping SHEN i Zi-Chun HUA. "DETECTION OF MICROCYSTINS BASED ON YEAST TWO-HYBRID SYSTEM". Acta Hydrobiologica Sinica 32, nr 2 (1.03.2008): 201–6. http://dx.doi.org/10.3724/issn1000-3207-2008-2-201-q.

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47

Salinas, Paloma, Sirine Bibak, Raquel Cantos, Lorena Tremiño, Carmen Jerez, Trinidad Mata-Balaguer i Asunción Contreras. "Studies on the PII-PipX-NtcA Regulatory Axis of Cyanobacteria Provide Novel Insights into the Advantages and Limitations of Two-Hybrid Systems for Protein Interactions". International Journal of Molecular Sciences 25, nr 10 (16.05.2024): 5429. http://dx.doi.org/10.3390/ijms25105429.

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Yeast two-hybrid approaches, which are based on fusion proteins that must co-localise to the nucleus to reconstitute the transcriptional activity of GAL4, have greatly contributed to our understanding of the nitrogen interaction network of cyanobacteria, the main hubs of which are the trimeric PII and the monomeric PipX regulators. The bacterial two-hybrid system, based on the reconstitution in the E. coli cytoplasm of the adenylate cyclase of Bordetella pertussis, should provide a relatively faster and presumably more physiological assay for cyanobacterial proteins than the yeast system. Here, we used the bacterial two-hybrid system to gain additional insights into the cyanobacterial PipX interaction network while simultaneously assessing the advantages and limitations of the two most popular two-hybrid systems. A comprehensive mutational analysis of PipX and bacterial two-hybrid assays were performed to compare the outcomes between yeast and bacterial systems. We detected interactions that were previously recorded in the yeast two-hybrid system as negative, as well as a “false positive”, the self-interaction of PipX, which is rather an indirect interaction that is dependent on PII homologues from the E. coli host, a result confirmed by Western blot analysis with relevant PipX variants. This is, to our knowledge, the first report of the molecular basis of a false positive in the bacterial two-hybrid system.

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48

Usher, Jane, i Ursula Bond. "Recombination between Homoeologous Chromosomes of Lager Yeasts Leads to Loss of Function of the Hybrid GPH1 Gene". Applied and Environmental Microbiology 75, nr 13 (8.05.2009): 4573–79. http://dx.doi.org/10.1128/aem.00351-09.

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ABSTRACT Yeasts used in the production of lagers contain complex allopolyploid genomes, resulting from the fusion of two different yeast species closely related to Saccharomyces cerevisiae and Saccharomyces bayanus. Recombination between the homoeologous chromosomes has generated a number of hybrid chromosomes. These recombination events provide potential for adaptive evolution through the loss or gain of gene function. We have examined the genotypic and phenotypic effects of one of the conserved recombination events that occurred on chromosome XVI in the region of YPR159W and YPR160W. Our analysis shows that the recombination event occurred within the YPR160W gene, which encodes the enzyme glycogen phosphorylase and generates a hybrid gene that does not produce mature mRNA and is nonfunctional due to frameshifts in the coding region. The loss of function of the hybrid gene leads to glycogen levels similar to those found in haploid yeast strains. The implications for the control of glycogen levels in fermentative yeasts are discussed.

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49

Chen, Qiu-Min, Na Cui, Yang Yu, Xiang-Nan Meng i Hai-Yan Fan. "Expression and Construction of Yeast Expression Vector Containing CsTCTP1 Gene from Cucumber in Yeast Two-Hybrid System". Open Plant Science Journal 10, nr 1 (30.06.2017): 55–61. http://dx.doi.org/10.2174/1874294701710010055.

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Background: The translationally controlled tumor protein (TCTP) was originally found in tumor tissue, and later found in other tissues. Initially, TCTP was considered a kind of growth-associated protein. Recent studies have shown that TCTP has many biological functions. Objective: To verification of CsTCTP1 gene function by yeast two-hybrid system, the pGBKT7- CsTCTP1 yeast expression vector was constructed and cytotoxicity and self-activating activity were detected, which could lay the foundation for further studies on gene function and make a preparation for verification of CsTCTP1 gene function by yeast two-hybrid system. Method: Specific PCR, conventional sequencing, heat shock conversion method and TE/LiAC transformation method. Results: We constructed a yeast expression vector containing the CsTCTP1 gene. The CsTCTP1 coding sequence was inserted into a pGBKT7 vector as a bait protein and then transformed into the Y2HGold yeast stain. Conclusion: We found that CsTCTP1 protein had no cytotoxic effect and could not be self-activated. The constructed bait expression vector can be used in the subsequent yeast two - hybrid detection system.

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50

Lin, Lin, Yuhong Shi, Zhaopeng Luo, Yuwen Lu, Hongying Zheng, Fei Yan, Jiong Chen, Jianping Chen, M. J. Adams i Yunfeng Wu. "Protein–protein interactions in two potyviruses using the yeast two-hybrid system". Virus Research 142, nr 1-2 (czerwiec 2009): 36–40. http://dx.doi.org/10.1016/j.virusres.2009.01.006.

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