Rozprawy doktorskie na temat „Stream habitat restoration”

Scotts Creek, located in northern Santa Cruz County, maintains the southernmost persistent population of Central California Coast (CCC) Coho Salmon (endangered) in addition to CCC steelhead (threatened). Fisheries biologists believe overwinter mortality due to lack of refuge habitat is the primary factor limiting salmonid production. Instream rearing habitat may also be limiting, especially during drought years. The legacy effects of historic land use practices, including dredging, wood removal, and the construction of levees, continued to limit refuge and rearing opportunities. A restoration project was implemented to improve refuge and rearing opportunities for salmonids along lower Scotts Creek by removing portions of the deteriorating levee, grading new connections with existing off-channel features, enhancing tributary confluences, constructing alcove habitat features at the margins of the stream channel, and constructing large wood complexes (LWCs) instream. Novel restoration techniques were employed on an experimental basis. Whole in-situ alder trees were pushed into the stream channel with their root systems left partially intact to establish living key pieces. Individual log, boulder, and rootwad LWC components were attached together with couplers that permitted some freedom of independent movement among the individual components. LWCs were braced against live, standing trees and stabilized with boulder ballasts placed on the streambed, which eliminated excavation of the streambed/banks and the need to dewater or divert the stream during construction. Project performance, changes to physical habitat characteristics, and changes to stream morphology associated with implementation were monitored using habitat assessment methods derived from the California Department of Fish and Wildlife’s (CDFW) salmonid habitat survey protocol (Flosi et al. 2010), and topographic survey techniques and data analysis adapted from Columbia Habitat Monitoring Protocol (Bouwes et al. 2011). Preliminary results indicated that LWCs remained stable and functional. In addition, implementation of the restoration project increased pool frequency, low-flow pool volume, instream cover, frequency of instream, alcove, and off-channel refuge habitat features, and frequency of points of connectivity with the floodplain. Long-term monitoring will be required to determine the survivorship, decay rates, and overall persistence of alder recruits.

Stream and watershed restoration projects have become increasingly common throughout the U.S., and the need for systematic post-project monitoring and assessment is apparent. This study describes three stream and watershed ecological restoration projects and the monitoring and evaluation methods employed or planned to evaluate project successes or failures. The stream and watershed restoration and evaluation methods described in this paper may be applicable to projects of similar types and scales. Rivers and streams serve a variety of purposes, including water supply, wildlife habitat, energy generation, transportation and recreational opportunities. Streams are dynamic, complex systems that not only include the active channel, but also adjacent floodplains and riparian vegetation along their margins. A natural stream system remains stable while transporting varying amounts of streamflow and sediment produced in its watershed, maintaining a state of “dynamic equilibrium.” (Strahler 1957, Hack 1960). When in-stream flow, floodplain morphology, sediment characteristics, or riparian vegetation are altered, this can affect the dynamic equilibrium that exists among these stream features, causing unstable stream and floodplain conditions. This can cause the stream to adjust to a new equilibrium state. This shift may occur over a long time and result in significant changes to water quality and stream habitat. Land-use changes in a watershed, stream channelization, installation of culverts, removal or alteration of streambank vegetation, water impoundments and other activities can dramatically alter ecological balance. As a result, large adjustments in channel morphology, such as excessive bank erosion and/or channel incision, can occur. A new equilibrium may eventually be reached, but not before the associated aquatic and terrestrial environment are severely impaired. Stream restoration is the re-establishment of the general structure, function and self-sustaining characteristics of stream systems that existed prior to disturbance (Doll et al. 2003). It is a holistic approach that requires an understanding of all physical and biological processes in the stream system and its watershed. Restoration can include a broad range of activities, such as the removal or discontinuation of watershed disturbances that are contributing to stream instability; installation of control structures; planting of riparian vegetation to improve streambank stability and provide habitat; and the redesign of unstable or degraded streams into properly functioning channels and associated floodplains. Kauffman et al. (1997) define ecological restoration as the reestablishment of physical, chemical and biological processes and associated linkages which have been damaged by human actions.

Connectivity in ecological systems is a broad concept that embodies the transmission of ecosystem components throughout landscapes at multiple spatial and temporal scales. Of relevance to the present study are the connections (or lack thereof) among local populations of stream fauna - population connectivity in lotic systems. Dispersal, recolonisation and migration are the demographic forms of population connectivity, and gene flow is the genetic aspect of population connectivity. Both forms of population connectivity have underpinned some of the classic theories and hypotheses in stream ecology, and have implications for pure and applied stream ecology, including ecosystem restoration. Conceptual models in ecology can facilitate understanding and predictability of the ecosystem processes they represent, and have potential applicability as management tools or 'rules of thumb' in conservation and restoration programs. Various theoretical models describe potential patterns of connectivity among local populations and in this thesis these models were used to evaluate population connectivity in a freshwater fish (southern pygmy perch, Nannoperca australis) and two reproductively isolated genetic lineages of freshwater shrimp (Paratya spp.) in small, geomorphically degraded streams in south eastern Australia. These streams (the Granite Creeks) have been the focus of a recent habitat restoration trial and several studies have examined fish and macroinvertebrate community responses to the experiment. It was the purpose of this study to contribute information about population connectivity in the selected species to complement these community ecology studies. Population connectivity was examined in these species using molecular data (mitochondrial and nuclear genetic data) and natural abundance isotopic signatures of nitrogen and carbon. At the landscape scale, results showed that populations of N. australis and the P. australiensis lineages were isolated among the streams and among sites within streams, and that there was no consistent pattern of isolation-by-distance in genetic data for any species. Thus, classic models of population connectivity, such as the Island Model and Stepping-Stone Model, were not supported by this study. Results indicated that population models that incorporated more complex aspects of stream structure may be more appropriate than these classic models for approximating observed patterns of population connectivity in lotic systems. The Stream Hierarchy Model (SHM) predicts that the hierarchical aspect of stream structure (i.e. stream confluences) have a dominant role in shaping patterns of population connectivity in lotic fauna, whereby populations among streams are more isolated than those within them. Although stream confluences were found to have an important role in population subdivision for the species examined in this study, the expectations of the SHM were met for only N. australis. For the P. australiensis lineages, the influence of topography (i.e. the longitudinal aspect of stream structure) was just as important as stream confluences in isolating local populations. Large-scale determinants of population isolation were thus found to be associated with both the hierarchical and longitudinal aspects of stream structure, and were not well represented by any single theoretical model of population connectivity. At within-stream scales, upland populations tended to be extremely isolated from other populations and had temporally stable genetic signatures. In contrast, lowland populations were connected to other lowland populations within the same stream to a greater degree, although the connections were patchy and a slight signature of temporal instability in the genetic data was evident for one of the P. australiensis lineages. Thus, metapopulation or patchy population models were found to represent connections among lowland populations within the same stream, although they were not appropriate for describing connectivity among upland populations. This finding highlights the importance of the longitudinal aspect of stream structure in shaping ecological patterns in lotic systems, and demonstrates that local patterns of population connectivity can vary over relatively small spatial scales. Overall, the results illustrate that both hierarchical and longitudinal aspects of stream structure can have important roles in isolating populations of stream fauna. They therefore also represent constraints for the ability of aquatic fauna to colonise restored habitat in streams. The corollary of this, however, is that such isolated populations of stream fauna represent appropriate population units at which to target habitat restoration. The hierarchical and longitudinal aspects of stream structure may thus represent 'rules of thumb' or 'landscape filters' that stream restoration ecologists could use to predict likely isolated populations of lotic fauna across the landscape. Such a 'rule of thumb' might be the inclusion of multiple isolated population units in restoration programs, as this strategy is likely to generate the greatest biological response to the restoration at the landscape scale, particularly with respect to intra-specific genetic diversity captured by restoration. At small spatial scales, such as for a single stream or tributary, the longitudinal aspect of stream structure can be an important factor to consider when designing stream habitat restoration programs. In this study, lowland sites were unstable and there were patchy connections among local lowland populations within the same stream, whereas upland populations were isolated at this scale. In contrast, other studies have found that upstream populations of some species can be connected in a patchy fashion in other systems. For such unstable sections of stream, where there are patchy patterns of local population connectivity, the inclusion of multiple restored patches, especially refugial habitat, is likely to produce the greatest biotic response at the patch scale, particularly with respect to demographic responses (such as local colonisation). Multiple restored refugial patches will enable species to persist throughout the stream section during adverse environmental conditions, will allow for variation in local movement patterns and distances between species and between years with contrasting environment conditions (e.g. stream flow), and may harbour different species assemblages and intraspecific genotypes due to stochastic processes (i.e. have functional heterogeneity). The hierarchical and longitudinal aspects of stream structure are thus important determinants of population connectivity at both large and small spatial scales, and have implications for how stream biota will respond to restoration at patch and landscape scales.

Connectivity in ecological systems is a broad concept that embodies the transmission of ecosystem components throughout landscapes at multiple spatial and temporal scales. Of relevance to the present study are the connections (or lack thereof) among local populations of stream fauna - population connectivity in lotic systems. Dispersal, recolonisation and migration are the demographic forms of population connectivity, and gene flow is the genetic aspect of population connectivity. Both forms of population connectivity have underpinned some of the classic theories and hypotheses in stream ecology, and have implications for pure and applied stream ecology, including ecosystem restoration. Conceptual models in ecology can facilitate understanding and predictability of the ecosystem processes they represent, and have potential applicability as management tools or 'rules of thumb' in conservation and restoration programs. Various theoretical models describe potential patterns of connectivity among local populations and in this thesis these models were used to evaluate population connectivity in a freshwater fish (southern pygmy perch, Nannoperca australis) and two reproductively isolated genetic lineages of freshwater shrimp (Paratya spp.) in small, geomorphically degraded streams in south eastern Australia. These streams (the Granite Creeks) have been the focus of a recent habitat restoration trial and several studies have examined fish and macroinvertebrate community responses to the experiment. It was the purpose of this study to contribute information about population connectivity in the selected species to complement these community ecology studies. Population connectivity was examined in these species using molecular data (mitochondrial and nuclear genetic data) and natural abundance isotopic signatures of nitrogen and carbon. At the landscape scale, results showed that populations of N. australis and the P. australiensis lineages were isolated among the streams and among sites within streams, and that there was no consistent pattern of isolation-by-distance in genetic data for any species. Thus, classic models of population connectivity, such as the Island Model and Stepping-Stone Model, were not supported by this study. Results indicated that population models that incorporated more complex aspects of stream structure may be more appropriate than these classic models for approximating observed patterns of population connectivity in lotic systems. The Stream Hierarchy Model (SHM) predicts that the hierarchical aspect of stream structure (i.e. stream confluences) have a dominant role in shaping patterns of population connectivity in lotic fauna, whereby populations among streams are more isolated than those within them. Although stream confluences were found to have an important role in population subdivision for the species examined in this study, the expectations of the SHM were met for only N. australis. For the P. australiensis lineages, the influence of topography (i.e. the longitudinal aspect of stream structure) was just as important as stream confluences in isolating local populations. Large-scale determinants of population isolation were thus found to be associated with both the hierarchical and longitudinal aspects of stream structure, and were not well represented by any single theoretical model of population connectivity. At within-stream scales, upland populations tended to be extremely isolated from other populations and had temporally stable genetic signatures. In contrast, lowland populations were connected to other lowland populations within the same stream to a greater degree, although the connections were patchy and a slight signature of temporal instability in the genetic data was evident for one of the P. australiensis lineages. Thus, metapopulation or patchy population models were found to represent connections among lowland populations within the same stream, although they were not appropriate for describing connectivity among upland populations. This finding highlights the importance of the longitudinal aspect of stream structure in shaping ecological patterns in lotic systems, and demonstrates that local patterns of population connectivity can vary over relatively small spatial scales. Overall, the results illustrate that both hierarchical and longitudinal aspects of stream structure can have important roles in isolating populations of stream fauna. They therefore also represent constraints for the ability of aquatic fauna to colonise restored habitat in streams. The corollary of this, however, is that such isolated populations of stream fauna represent appropriate population units at which to target habitat restoration. The hierarchical and longitudinal aspects of stream structure may thus represent 'rules of thumb' or 'landscape filters' that stream restoration ecologists could use to predict likely isolated populations of lotic fauna across the landscape. Such a 'rule of thumb' might be the inclusion of multiple isolated population units in restoration programs, as this strategy is likely to generate the greatest biological response to the restoration at the landscape scale, particularly with respect to intra-specific genetic diversity captured by restoration. At small spatial scales, such as for a single stream or tributary, the longitudinal aspect of stream structure can be an important factor to consider when designing stream habitat restoration programs. In this study, lowland sites were unstable and there were patchy connections among local lowland populations within the same stream, whereas upland populations were isolated at this scale. In contrast, other studies have found that upstream populations of some species can be connected in a patchy fashion in other systems. For such unstable sections of stream, where there are patchy patterns of local population connectivity, the inclusion of multiple restored patches, especially refugial habitat, is likely to produce the greatest biotic response at the patch scale, particularly with respect to demographic responses (such as local colonisation). Multiple restored refugial patches will enable species to persist throughout the stream section during adverse environmental conditions, will allow for variation in local movement patterns and distances between species and between years with contrasting environment conditions (e.g. stream flow), and may harbour different species assemblages and intraspecific genotypes due to stochastic processes (i.e. have functional heterogeneity). The hierarchical and longitudinal aspects of stream structure are thus important determinants of population connectivity at both large and small spatial scales, and have implications for how stream biota will respond to restoration at patch and landscape scales.
Thesis (PhD Doctorate)
Doctor of Philosophy (PhD)
Australian School of Environmental Studies
Faculty of Environmental Sciences
Full Text

In 2000 the European Union introduced the Water Framework Directive, new legislation that regulates the use of surface waters within the European Community. The goal of this legislation is to protect, enhance and restore all surface waters within the Community to Good Surface Water Status. Good-Status is described as having low levels of anthropogenic distortion in its hydro-morphological and physiochemical components as well as possessing biota that would normally be associated with the type-specific aquatic ecosystem. The assessment of ecosystem status is to be defined by comparisons with intact representative reference sites, by using modelling techniques that define reference conditions, a combination of the two, or expert judgement. As undisturbed aquatic ecosystems are rare or non-existent in Europe the base-line data will have to be defined using the latter methodologies. The aim of this project is to help define reference conditions for lotic systems in Europe based on the physical instream habitat parameters of a resident species. Brown trout (Salmo trutta), a ubiquitous and well studies species endemic to Europe, was used as the target organism to develop the assessment protocol. The project focused on the requirements this species has of aspects of its physical habitat; specifically, its usage of depth, velocity, and substrate. An extensive survey of the scientific literature was used to define the requirements trout has for the three physical parameters at four life stages. These are the spawning, nursery, juvenile and adult-resident life stages. These requirements were expressed as tolerance profiles, which defined suitable, usable and not-suitable habitat. The methodology was demonstrated by evaluating the physical habitat available at six reaches in three small streams, March, Burnhouse and Bin Burns, which drain into the Carron Valley Reservoir in central Scotland. From the perspective of water depth, these streams seem best suited as nursery areas, are less well suited as juvenile habitat, and do not appear to be well matched for adult residents. The assessment of both velocity and substrate indicated that the portion of the study reaches available for use by resident brown trout increased with trout size. The assessment of all three physical habitat parameters at all study reaches found variable portions of the streams suitable for use by spawning trout. When the habitat variables are integrated all stream segments streams seem best suited as nursery and spawning areas. To a lesser extent juvenile trout can use these burns and very little habitat is available for use by adult resident trout. The tolerance profiles that were created in this study are standardized assessment criteria that when compared with stream survey data can produce an appraisal of habitat availability in any fluvial freshwater system that supports populations of brown trout (Salmo trutta). The assessment method can be combined to produce an integrated habitat assessment, using both an index and by the calculation of Froude number, which is a more realistic approach than the assessment of individual habitat parameters as salmonids choose their microhabitat based on multiple factors. This approach allows an investigator to determine the amount and relative portion of useable habitat and to determine the quality of that habitat. Finally, by examining the physical habitat variable that most strongly correlates with the final integrated habitat distribution the individual habitat parameter that is most important to the distribution of physical habitat at a site can be determined. While this technique would certainly benefit from further development it does show potential to aid in physical habitat assessment of trout streams.

Stream restoration has become a popular management tool for attempting to increase and/or restore fish populations by improving habitat. A section of the Strawberry River, Utah recently underwent a stream restoration project, where the main goals of the project included increasing spawning activity, rearing potential, and resident populations of Bear Lake cutthroat trout Oncorhynchus clarkia utah. The impact of the restoration project on cutthroat trout was investigated by first characterizing preferred habitat for different life stages, investigating habitat as a limiting factor in the system, and then assessing the quality of available habitat by comparing restored/unrestored sections of stream and pre-restoration/post-restoration of the same sections of stream. Results indicated cutthroat trout in the Strawberry River preferred faster water velocities, shallower depths, moderate substrates sizes, and riffle habitat types for spawning. In contrast, juvenile and adult life stages preferred deeper sections of stream, the presence of cover, and pool habitat types. Limiting factor analyses suggested spawner abundance may be limiting in the Strawberry River and maximum daily temperatures during the summer may be the strongest limiting habitat factor for juvenile and resident adult cutthroat trout. Restoration generally appeared to initiate a shift towards more favorable habitat, especially in terms of increasing near-bed velocity and increasing the proportion of preferred substrate sizes for spawning, and increasing the percentage of pools for juvenile and resident adult life stages. The potential benefits of the restoration remained somewhat ambiguous, a result of relatively small differences observed between study reaches, limited pre-restoration data, high spatial and inter-annual variability within and among control study reaches, and the inherently delayed reaction of ecological responses to physical changes from restoration. However, these issues can be resolved through continued monitoring. Long-term monitoring would allow for the accounting of natural variability to further tease out differences resulting from restoration and differences resulting from natural fluctuations. Additional monitoring would also capture long-term responses, which has the potential to be significant considering the relatively slow response of riparian vegetation to restoration. This study also provides a baseline dataset and template for future long-term monitoring efforts.

River restoration projects are being installed worldwide to rehabilitate degraded river habitat. Many of these projects focus on stream habitat improvement (SHI), and an estimated 60%of the 37,000 projects listed in the National River Restoration Science Synthesis Program focus on SHI for salmon and trout species. These projects frequently lack a sufficient monitoring program or account for the environmental costs associated with SHI. The present study used life cycle assessment (LCA) techniques and topographic effectiveness monitoring to quantify environmental costs on the basis of geomorphic change. This methodology was a novel approach to assessing the cost-benefit relationship of SHI. To test this methodology, two phases of the Lower Scotts Creek Floodplain and Habitat Enhancement Project (LSCR) were used as a case study. The LSCR was a SHI project installed along the northern coast of Santa Cruz County, California, USA. A limited scope LCA was used to quantify the life cycle impacts of raw material production, materials transportation, and on-site construction. Once these baseline results were produced, a topographic monitoring program was used to quantify the topographic diversity index (TDI) in pre- and post-project conditions. The TDI percent change was used to scale the baseline LCA results, which quantified the environmental impacts based on geomorphic change. Phase II outperformed phase I. Phase I had greater cumulative environmental impacts and experienced a 7.7 % TDI increase from pre- to post-project conditions. Phase II had 43% less cumulative environmental impacts and experienced a 7.9% TDI increase from pre- to post-project conditions. The impacts in phase I were greater because of the amount of material excavated to create off-channel features, which were a key feature of the LSCR. A scenario analysis also was conducted within the LCA component of this study. The scenario analysis suggests that life cycle impacts could be reduced by 30%-65% by using the accelerated recruitment method in place of importing materials to build large wood complexes. The results of this study suggest that managers may improve the environmental performance of SHI projects by: (1) using the accelerated recruitment method to introduce larger key pieces to the channel, reducing the need to import materials; (2) using nursery grown plants as opposed to excavating plants for revegetation; (3) minimizing fuel combustion in heavy equipment and haul trucks by ensuring clear access to the channel and streambank, using small engine equipment to clear access corridors during site preparation, running more fuel-efficient machinery or bio-fuel powered machinery, and by attempting to minimize haul distances by sourcing materials locally; and (4) utilizing a “franken-log” design (a ballasted LWC configuration with a rootwad fastened to the downstream end of a log) in LWCs which led to favorable TDI change. This study concluded that LCA could be a valuable tool for monitoring SHI and river restoration projects and that further research of the TDI analysis is justified.

Abstract Despite the great amount of in-stream restorations conducted in the past decades there is still a disturbing lack of knowledge about the outcome of these measures. The overall goal of this study was to assess the effect of enhanced streambed heterogeneity on the ecology of stream salmonids and stream retention efficiency. Substratum heterogeneity is often considered as one of the most important limiting factors for organisms living in running waters. Winter ecology of rivers has not been broadly studied regardless of the general belief that wintertime conditions strongly influence the survival and population size of stream salmonids. In an experimental study, the paucity of wintertime habitat in simplified channels caused temporary mass loss in age-0 trout. In late spring, channelized stream trout performed catch-up growth with potentially negative effects on long-term fitness. A management implication of this study is that increasing cover availability by in-stream restoration structures may enhance the long term success of juvenile salmonids although the short term effects were minor. Densities of salmon parr in the River Kiiminkijoki showed no response to streambed restoration. Suitable habitat area for salmon parr increased after restoration under summer conditions. However, restoration-induced benefits to winter habitats were marginal, with one study reach indicating even negative values. Most of the areas with good habitat values were located along river margins, indicating that restoration measures had only limited impact on the mid-sections of the river channel. Dredging of small streams may have caused depletion of allochthonous organic matter due to the reduction of retentive structures. In a leaf release experiment, moss cover enhanced retentiveness as well as did various restoration structures (boulders, large wood). Only a very high amount of wood clearly enhanced retention capacity. This underlines the importance of wood as an effective retention structure in headwater streams. This study indicates that habitat complexity as such may be less important than life-stage specific habitat requirements of fish (e.g. cover for overwintering salmonids). Importantly, restoration may only be successful if the measures used target the limiting factor(s) of the ecosystem or the species; for salmonids, habitat complexity does not seem to be this factor
Tiivistelmä Uiton jälkeisten kunnostustoimenpiteiden määrä Suomessa on ollut huomattava, mutta vaikutusten arviointi, pelkästään kalastonkin kannalta, on jäänyt vähäiselle huomiolle. Tässä työssä selvitettiin kunnostusten merkitystä lohen ja taimenen poikasvaiheille, huomioiden etenkin pohjan rakenteellisen monimuotoisuuden vaikutus. Työssä selvitettiin myös kunnostusten vaikutuksia lehtikarikkeen pidätyskykyyn, joka on erityisesti latvapurojen ekosysteemien tärkeimpiä perustoimintoja. Lohikalojen talviekologinen tutkimus on viime aikoihin saakka ollut vähäistä, vaikka talviolosuhteiden uskotaan rajoittavan pohjoisten virtavesien eliöstön elinmahdollisuuksia. Kokeellisessa työssä rännimäisissä uomissa talvehtiminen aiheutti taimenenpoikasille tilapäisen painon alenemisen ja nopean kompensaatiokasvun loppukeväällä. Kompensaatiokasvu voi vaikuttaa negatiivisesti koko kalan eliniän, joten kunnostusten tuoma hyöty sopivien suojapaikkojen lisääntymisenä voi edesauttaa lohikalojen pitkäaikaista menestymistä. Kiiminkijoella lohenpoikasten tiheydet eivät muuttuneet kunnostuksen myötä ja vuosien välinen vaihtelu oli kuuden vuoden seurantajaksolla huomattavan suurta. Elinympäristömallinnuksen perusteella soveltuvan elinympäristön lisäys ei ollut merkittävää, koska etenkin talviaikaisten alueiden puute jäi huomattavaksi. Suurin osa soveltuvasta elinympäristöstä sijaitsi joen reuna-alueilla, joten kunnostusvaikutus joen keskiosaan jäi odotettua pienemmäksi. Uittoperkaus on voinut johtaa latvavesien ekosysteemien köyhtymiseen maalta tulevan orgaanisen aineksen pidättymiskyvyn vähentyessä. Kokeellisen työn perusteella kuitenkin nykypäivän tilanne vuosikymmeniä uiton loppumisen jälkeen osoittautui lähes yhtä pidättäväksi kuin nykyisin käytetyt kunnostusrakenteet (kivi tai puu). Kunnostusrakenteeseen tulisi lisätä huomattava määrä puuta, jotta lehtikarike pidättyisi korkeallakin virtaamatasolla. Tulosten perusteella elinympäristöjen muuttaminen monimuotoisemmiksi ei takaa kunnostustoimien onnistumista, sillä etenkin kalapopulaatioita rajoittavat yleensä useat tekijät. Jos kuitenkin elinympäristö on populaatiota rajoittava resurssi ja sitä pystytään lisäämään (kuten talviaikaiset suojapaikat), voidaan kunnostuksella saada näkyviä tuloksia. On ilmeistä, että kunnostustoimien tulisi olla nykyistä kattavampia ja paremmin suunnattuja rajoittaviin tekijöihin, jotta tulokset näkyisivät

Why evaluations of the ecological outcomes of stream and river restoration have largely reported inconclusive or negative results has been the subject of much debate over the last decade or more. Understanding the reasons behind the lack of positive results is important for bettering future restoration efforts and setting realistic expectations for restoration outcomes. This thesis explores possible explanations for why researchers have failed to find clear and predictable biotic responses to stream restoration: recovery time has been too short, that restoration of habitat complexity is not clearly linked to instream biodiversity, that one monitored organism group is not representative of the entire community, that restoration effort was not intense enough to restore the potential habitat complexity of a system, and that reach-scale restoration done in the presence of catchment-scale degradation obscures restoration results. The overarching goal of this thesis is to study the holistic effect of reach-scale restoration of historic reach-scale simplification, due to timber floating in northern Swedish streams, thus avoiding the added pressure of catchment-scale degradation typically found at most restoration sites (e.g., non-point-source pollution and impervious cover). Using this model system, I was able to show that it took 25 years for riparian plant species richness at restored sites to increase above that of channelized sites. Furthermore, it was clear that restoration of these streams caused a large and rapid change in N-processing in the riparian zone and this alteration persists for at least 25 years. Additionally, multiple metrics of geomorphic complexity were needed to explain some of the more subtle responses of organism groups. Macroinvertebrates, diatoms, and macrophytes did not respond concordantly and cannot serve as surrogates or indicators for each other. I found that older best practice methods of restoration rarely restored the large-scale features needed to bring the sites up to their potential complexity because these elements were destroyed or removed from the system. Advanced restoration techniques used in more recent restorations added big boulders and instream wood and increased complexity to a level that elicited a biological response. By combining surveys of multiple metrics of structure, diversity of multiple organism groups, and process in this thesis I was able to get a holistic view of the effects of restoration of streams after timber floating. We now know that it takes at least 25 years for riparian plants and N-cycling to recover, we understand that multiple metrics of geomorphic complexity should be measured to be able to explain biotic responses, and that restored complexity should better match the potential complexity of the site in order to elicit a biological response. Finally, we know that multiple organism groups need to be assessed when evaluating the response of biodiversity to restoration.

Stream morphology is an important aspect of many hydrological and ecological applications such as stream restoration design (SRD) and estimating sediment loads for total maximum daily load (TMDL) development. Surveying of stream morphology traditionally involves point measurement tools, such as total stations, or remote sensing technologies, such as aerial laser scanning (ALS), which have limitations in spatial resolution. Terrestrial laser scanning (TLS) can potentially offer improvements over other surveying methods by providing greater resolution and accuracy. The first two objectives were to quantify the measurement and interpolation errors from total station surveying using TLS as a reference dataset for two fluvial applications: 1) measuring streambank retreat (SBR) for sediment load calculations; and 2) measuring topography for habitat complexity quantification. The third objective was to apply knowledge uncertainties and stochastic variability to the application of SRD. A streambank on Stroubles Creek in Blacksburg, VA was surveyed six times over two years to measure SBR. Both total station surveying and erosion pins overestimated total volumetric retreat compared to TLS by 32% and 17%, respectively. The error in SBR using traditional methods would be significant when extrapolating to reach-scale estimates of sediment load. TLS allowed for collecting topographic data over the entire streambank surface and provides small-scale measurements on the spatial variability of SBR. The topography of a reach on the Staunton River in Shenandoah National Park, VA was measured to quantify habitat complexity. Total station surveying underestimated the volume of in-stream rocks by 55% compared to TLS. An algorithm was developed for delineating in-stream rocks from the TLS dataset. Complexity metrics, such as percent in-stream rock cover and cross-sectional heterogeneity, were derived and compared between both methods. TLS quantified habitat complexity in an automated, unbiased manner at a high spatial resolution. Finally, a two-phase uncertainty analysis was performed with Monte Carlo Simulation (MCS) on a two-stage channel SRD for Stroubles Creek. Both knowledge errors (Manning's n and Shield's number) and natural stochasticity (bankfull discharge and grain size) were incorporated into the analysis. The uncertainty design solutions for possible channel dimensions varied over a range of one to four times the magnitude of the deterministic solution. The uncertainty inherent in SRD should be quantified and used to provide a range of design options and to quantify the level of risk in selected design outcomes.
Ph. D.

Rivers and their catchments are under mounting pressure from direct channel modification, intensification of land use, and from a legacy of decades of channelisation. Recent legislation, in the form of the EU Water Framework Directive, places a greater emphasis on the management of water bodies as holistic systems, and includes the explicit consideration of hydromorphological quality, which describes the hydrologic and geomorphic elements of river habitats. These are defined specifically as hydrological regime, river continuity and river morphology. This appreciates that sediment and flow regimes, along with the channel structure, provides the 'template' on which stream ecological structure and function is built. Invertebrate fauna contribute significantly to the biodiversity of rivers, and often form the basis of monitoring river health. However much of the fundamental ecological knowledge base on the response of invertebrates to hydromorphological change needed to make informed decisions and accurate predictions, is either lacking, inadequate or contradictory. This thesis addresses some of the key potential shortcomings in recent bio-assessment that others have alluded to, but which have rarely been explored in the context of direct channel manipulations. By using two case studies of, realignment in a natural upland catchment, and flood protection engineering in an urban stream, this study investigates the sensitivity of hydromorphological impact assessment methods that rely on biodiversity patterns of benthic riverfly (Ephemeroptera, Plecoptera and Trichoptera) larva. This work employed widely used biomonitoring indices of benthic riverfly larva abundance, species richness, alpha and beta diversity, and community composition, applied over a range of spatial scales, in combination with spatially contemporaneous physical habitat data, to describe and explain community changes in response to disturbance, and patterns of natural variation. The effects of restoration were investigated using a high degree of sample replication within channels and across the wider catchment, as well as contrasting spring and autumn seasons. To assess change in a small urban channel, approaches that explicitly consider spatial elements of community data, using spatial eigenvectors analysis, were applied to spatially detrend community data and directly investigate spatial patterns. Restoration of the Rottal Burn was found to be successful in restoring habitat diversity and geomorphic processes, and in turn increasing reach scale species richness and beta diversity through the gradual arrival of rare and specialist taxa into novel habitats. Catchment scale replication revealed high variation in diversity indices of modified and undisturbed streams, and a strong temporal pattern related to antecedent flow conditions. Channels with greater habitat heterogeneity were able to maintain high gamma diversity during times of high flow stress by providing a number of low flow refuges along their length. The urban Brox Burn had surprisingly high riverfly richness and diversity driven by small scale hydraulic heterogeneity, created by bed roughness resulting in a range of microhabitats. Riverfly community responses to direct channel dredging could not be detected by measurements of average richness and diversity, however distinct changes were seen in gamma diversity, the identity of community members and their arrangement among sample patches. Impacts of sediment pollution release due to engineering were short lived and apparently had little detrimental impact on biodiversity. Strong spatial patterns of community assembly on the stream bed were uncovered, relating to longitudinal, edge and patchy patterns. Significant habitat drivers of community composition were confounded by high amounts of spatial autocorrelation, especially hydraulic variables. Due to the strongly physical and spatial nature of hydromorphological disturbance, turnover of species between sample locations at a range of scales, and the spatial arrangement of habitats and communities is of more use for detecting these types of subtle changes compared to mean richness or diversity. These findings have implications for the targeting of resources for monitoring of restoration, or engineering disturbances, in order to be sensitive to hydromorphological change. Efforts should target the main area of natural variability within the system, either replicating sampling in time or space to distinguish effects of impact. Spatial patterns, measures of beta diversity and species identity can be better exploited to identify systems with functioning geomorphological processes. Channel typologies proved misleading, and quantification of habitat and selection of control sites using multiple pre-defined criteria should be carried out. Studies of restoration operations and engineering impacts provide considerable opportunities for advancing our knowledge of the mechanisms that drive community response under a range of conditions to improve impact detection.

Previous research spanning lotic, lentic, and marine environments suggests that habitat enhancement structures (HES) may attract and concentrate fish from adjacent habitats rather than increase fish populations. In addition to concentrating fish, we hypothesized that anglers may target HES, and therefore, that fish concentrated at HES may be more susceptible to angling. To test our hypotheses, we assessed spatial patterns of: 1) habitat structure; 2) fish holding locations; and 3) fishing pressure (i.e., casting patterns) in southwestern Montana stream reaches with HES. Findings suggest that HES aggregate fish and that anglers more successfully target fish holding near artificial HES than similar densities of fish holding further from artificial structures (e.g., near natural holding structures). We conclude that installation of HES may increase angling opportunities, but could also act as fish population sinks by focusing fishing pressure over likely fish holding areas. (Note: Access 2007 Database, and four GIS shapefiles are on a supplemental CD. Contact Special Collections at Renne Library, Montana State University in order to access it.)

What will happen to ecosystems if species continue to go extinct at the high rates seen today? Although ecosystems are often threatened by a myriad of physical or chemical stressors, recent evidence has suggested that the loss of species may have impacts on the functions and services of ecosystems that equal or exceed other major environmental disturbances. The underlying causes that link species diversity to ecosystem functioning include species niche complementarity, facilitative interactions, or selection effects, which cause process rates to be enhanced in more diverse communities. Interference competition, antagonistic interactions, or negative selection effects may otherwise reduce the efficiency or resource processing in diverse communities. While several of these mechanisms have been investigated in controlled experiments, there is an urgent need to understand how species diversity affects ecosystem functioning in nature, where variability of both biotic and abiotic factors is usually high. Species functional traits provide an important conceptual link between the effects of disturbances on community composition and diversity, and their ultimate outcomes for ecosystem functioning. Within this framework, I investigated relationships between the decomposition of leaf litter, a fundamental ecosystem process in stream ecosystems, and the composition and diversity of functional traits within the detritivore feeding guild. These include traits related to species habitat and resource preferences, phenology, and size. I focused on disentangling the biotic and abiotic drivers, including functional diversity, regulating ecosystem functioning in streams in a series of field experiments that captured real-world environmental gradients. Leaf decomposition rates were assessed using litter-bags of 0.5 and 10 mm opening size which allow the quantification of microbial and invertebrate + microbial contributions, respectively, to litter decomposition. I also used PVC chambers where leaf litter and a fixed number of invertebrate detritivores were enclosed in the field for a set time-period. The chemical characterisation of stream detritivores and leaf litter, by means of their nitrogen, phosphorus, and carbon concentration, was used to investigate how stoichiometric imbalance between detritivores and leaf litter may affect consumer growth and resource consumption. I found that the diversity and composition of functional traits within the stream detritivore feeding guild sometimes had effects on ecosystem functioning as strong as those of other major biotic factors (e.g. detritivore density and biomass), and abiotic factors (e.g. habitat complexity and agricultural stressors). However, the occurrence of diversity-functioning relationships was patchy in space and time, highlighting ongoing challenges in predicting the role of diversity a priori. The stoichiometric imbalance between consumers and resource was also identified as an important driver of functioning, affecting consumer growth rates, but not leaf decomposition rates. Overall, these results shed light on the understanding of species functional diversity effect on ecosystems, and indicate that the shifts in the functional diversity and composition of consumer guilds can have important outcomes for the functioning of stream ecosystems.

The restoration of rivers and streams should be based on a strong conceptual framework. Streams are developing systems. As such, streams exhibit temporal behaviors that change with changing stream environments. Underlying the dynamic development of streams is potential capacity. Streams express this capacity as an array of habitats over time and across the landscape. Human land uses in the western United States have rapidly altered aquatic habitats as well as the processes that shape habitat. As a result, the diversity of native fishes and their habitats has been suppressed. Restoration is fundamentally about allowing stream systems to re-express their capacities. Four steps are provided to guide stream restoration activities. Key tasks include: identification of the historic patterns of habitat development; protection of the developmental diversity that remains; local application of specific knowledge about suppressive factors; classification of sensitive, critical or refugium habitats; release of anthropogenic suppression; and monitoring of biotic response to habitat change. Applying these concepts, I describe potential habitat refugia for aquatic organisms in the Joseph Creek basin in the Blue Mountains of northeast Oregon. Five valley segment classes, differing in valley corridor landforms, are described. Of these, low-gradient wide alluvial valleys have been most altered by human land use. Riparian vegetation has been extensively removed or altered in alluvial valleys. Currently, stream habitats are structurally depauperate, and warm to temperatures well above thermal tolerances of native salmonids. Potential refugia for native coldwater fishes in these valleys include patches of complex habitat within stream reaches. Reaches fenced to exclude domestic livestock exhibit narrower channels, more pools, and higher frequencies of stable vegetated banks than nearby unfenced reaches. During summer low flow periods, cold groundwater seeping into and accumulating in stream channels forms "cold pools". Cold pools provide potential seasonal refuge for coldwater fish at microhabitat scales. Cold pools are associated with channel complexity, and are more frequent in reaches with vigorous riparian vegetation. Seven classes of cold pools are described. Cold pool classes differ in minimum temperature, maximum depth and volume. Distributions of cold pool classes between valley segment classes suggest that valley geomorphology in addition to local channel form may influence development of certain cold pool types. Although refugia at the microhabitat to reach scales are important, the context within which remnant or refugium habitats and associated relict populations are maintained may ultimately determine the persistence of those species and habitats. In managed landscapes, protection and restoration of habitats at many scales may be necessary if we are to best insure the persistence of native species.
Graduation date: 1995

碩士
逢甲大學
水利工程所
95
The purpose of this study focused on simulating the effects of stream habitat restoration approaches for particular species by quantifying habitat suitability. First, the habitat suitability curve (HSC) for the targeted species, known as ‘Taiwan masu salmon’ (Oncorhynchus masou Formosanus) was established based on the field investigation data. With the geographic and hydrology data, the Physical Habitat Simulation System (PHABSIM) based on instream flow incremental methodology (IFIM) was operated to simulate the variations of weighted usable habitat area (WUA) under different hydrology conditions. Thus, the relationship between habitat conditions and the specie variation was discussed. The simulation divides into two parts: Field data and experimental results. This study gathered field data from seven different sections of Chi-Chia-Wan Creek in Taiwan in June, 2005. The results of these simulations showed that the Breeding Center, Wan-Shou bridge and Dam #1 perceived highest WUA at 8741.67 m2、6816.52 m2 and 5248.88 m2 respectively; followed by Da-Chia Creek station, Yeau-Shen Creek station and Tao-Shan northern Creek station. Tao-Shan western Creek station perceived the lowest WUA at 812 m2. The percentages of usable habitat area (PUA) of these simulations suggested that Wan-Shou bridge had the highest PUA at 58.74%, the Breeding Center and Dam #1 are at 47.83% and 41.87% respectively. The above results revealed strong data correlation when compared against species investigation in seven stream section in June, 2005. Moreover, this study took the results from “An Experimental Study of Single Large Woody Debris Structure on the Change of Channel Morphplpgy (Chou, 2005)”for simulation. The results indicated that PUA reduced gradually as the slope of river raised, this was because the rising slope made velocity to increase. Under different discharge conditions, the averaged PUA of low and high discharge were about 77% to 78% but the averaged PUA of medium discharge was higher than the other two conditions, which was at 85%. Due to smaller standard deviation from medium discharge condition, it presented a much more stable and reliable habitat for Oncorhynchus masou. Under different Large Woody Debris Structure (LWDS) deployments, this study discovered that the averaged PUA of the traditional spur dike and none structure configuration were about 78%. However, the averaged PUA of the none root spur dike can be improved to nearly 85% ; out of all, several association kinds can even go up to 90%. At contrast, the averaged PUA of the tree spur dike were only 73% and appeared to have the highest standard deviation, which would cause clear diversity effects of the habitat restoration in disposing the tree spur dike.

This diploma thesis deals with a proposal and evaluation of stream restoration measures as an effective tool to achieve good ecological status within the requirements of the Water Framework Directive 2000/60/ES. The main aim of this diploma thesis is to propose stream restoration measures at the Lišanský Brook based on evaluation of hydromorphological status, analysis of land-use changes and anthropogenic modification of the river basin, runoff and water quality assessment. Attention is also paid to the evaluation of the restoration measures in the selected localities on Botič and Litovický Brook. The main method used for the design and assessment of stream restoration measures is a field survey using the HEM methodology (Langhammer, 2014). Land-use analysis and stream adjustment analysis are based on available historical maps. Based on the results, Lišanský Brook is evaluated as moderately modified. The entire river basin is an intensively farmed landscape that has been affected by inappropriate anthropogenic modifications. To improve the current unsuitable stream conditions, it would be convenient to apply complete restoration measures on Lišanský Brook. Keywords: Stream, restoration, habitat, diversity, urban area, rural landscape

The thesis explores various aspects of ecology of endangered damselfly Coenagrion ornatum, the specialists for lowland headwaters, in post-mining streams of Radovesicka spoil. The first part of thesis is manuscript which has been already submitted in Journal of Insect Conservation. In the first part, we focused on population estimate of the local population using capture-recapture method, and explored its habitat requirements across life stages and spatial scales. In the next part, I assess mobility of the focal species and reveals basic distribution patterns. Finally, the thesis suggest various implications for restoration of post-mining freshwaters and conservation of the studied species.