Artykuły w czasopismach na temat „Protein-RNA docking”
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Arnautova, Yelena A., Ruben Abagyan i Maxim Totrov. "Protein-RNA Docking Using ICM". Journal of Chemical Theory and Computation 14, nr 9 (17.07.2018): 4971–84. http://dx.doi.org/10.1021/acs.jctc.8b00293.
Pełny tekst źródłaHe, Jiahua, Huanyu Tao i Sheng-You Huang. "Protein-ensemble–RNA docking by efficient consideration of protein flexibility through homology models". Bioinformatics 35, nr 23 (14.05.2019): 4994–5002. http://dx.doi.org/10.1093/bioinformatics/btz388.
Pełny tekst źródłaDelgado Blanco, Javier, Leandro G. Radusky, Damiano Cianferoni i Luis Serrano. "Protein-assisted RNA fragment docking (RnaX) for modeling RNA–protein interactions using ModelX". Proceedings of the National Academy of Sciences 116, nr 49 (15.11.2019): 24568–73. http://dx.doi.org/10.1073/pnas.1910999116.
Pełny tekst źródłaPérez-Cano, Laura, Miguel Romero-Durana i Juan Fernández-Recio. "Structural and energy determinants in protein-RNA docking". Methods 118-119 (kwiecień 2017): 163–70. http://dx.doi.org/10.1016/j.ymeth.2016.11.001.
Pełny tekst źródłaZhang, Zhao, Lin Lu, Yue Zhang, Chun Hua Li, Cun Xin Wang, Xiao Yi Zhang i Jian Jun Tan. "A combinatorial scoring function for protein-RNA docking". Proteins: Structure, Function, and Bioinformatics 85, nr 4 (9.02.2017): 741–52. http://dx.doi.org/10.1002/prot.25253.
Pełny tekst źródłaZheng, Jinfang, Xu Hong, Juan Xie, Xiaoxue Tong i Shiyong Liu. "P3DOCK: a protein–RNA docking webserver based on template-based and template-free docking". Bioinformatics 36, nr 1 (7.06.2019): 96–103. http://dx.doi.org/10.1093/bioinformatics/btz478.
Pełny tekst źródłaSetny, Piotr, i Martin Zacharias. "A coarse-grained force field for Protein–RNA docking". Nucleic Acids Research 39, nr 21 (16.08.2011): 9118–29. http://dx.doi.org/10.1093/nar/gkr636.
Pełny tekst źródłaNithin, Chandran, Sunandan Mukherjee i Ranjit Prasad Bahadur. "A non-redundant protein-RNA docking benchmark version 2.0". Proteins: Structure, Function, and Bioinformatics 85, nr 2 (2.12.2016): 256–67. http://dx.doi.org/10.1002/prot.25211.
Pełny tekst źródłaWicaksono, Adhityo, i Arli Aditya Parikesit. "Molecular Docking and Dynamics of SARS-CoV-2 Programmed Ribosomal Frameshifting RNA and Ligands for RNA-Targeting Alkaloids Prospecting". HAYATI Journal of Biosciences 30, nr 6 (24.07.2023): 1025–35. http://dx.doi.org/10.4308/hjb.30.6.1025-1035.
Pełny tekst źródłaLi, Yaozong, Jie Shen, Xianqiang Sun, Weihua Li, Guixia Liu i Yun Tang. "Accuracy Assessment of Protein-Based Docking Programs against RNA Targets". Journal of Chemical Information and Modeling 50, nr 6 (19.05.2010): 1134–46. http://dx.doi.org/10.1021/ci9004157.
Pełny tekst źródłaGuilhot-Gaudeffroy, Adrien, Christine Froidevaux, Jérôme Azé i Julie Bernauer. "Protein-RNA Complexes and Efficient Automatic Docking: Expanding RosettaDock Possibilities". PLoS ONE 9, nr 9 (30.09.2014): e108928. http://dx.doi.org/10.1371/journal.pone.0108928.
Pełny tekst źródłaHuang, Sheng-You, i Xiaoqin Zou. "A nonredundant structure dataset for benchmarking protein-RNA computational docking". Journal of Computational Chemistry 34, nr 4 (10.10.2012): 311–18. http://dx.doi.org/10.1002/jcc.23149.
Pełny tekst źródłaMarium Bibi, Marium Bibi. "Binding Pattern Analysis of Different Allosteric Inhibitors of Hepatitis C Virus (HCV) Polymerase". Journal of the chemical society of pakistan 45, nr 6 (2023): 576. http://dx.doi.org/10.52568/001393/jcsp/45.06.2023.
Pełny tekst źródłaMarwal, Avinash, Mukesh Meena i RK Gaur. "Molecular Docking Studies of Coronavirus Proteins with Medicinal Plant Based Phytochemicals". Defence Life Science Journal 6, nr 1 (23.02.2021): 57–63. http://dx.doi.org/10.14429/dlsj.6.15704.
Pełny tekst źródłaSelvaraj, Jayaraman. "Molecular docking analysis of SARS-CoV-2 linked RNA dependent RNA polymerase (RdRp) with compounds from Plectranthus amboinicus". Bioinformation 17, nr 1 (31.01.2021): 167–70. http://dx.doi.org/10.6026/97320630017167.
Pełny tekst źródłaStefaniak, Filip, i Janusz M. Bujnicki. "AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses". PLOS Computational Biology 17, nr 2 (1.02.2021): e1008309. http://dx.doi.org/10.1371/journal.pcbi.1008309.
Pełny tekst źródłada Silva, Joyce Kelly R., Pablo Luis Baia Figueiredo, Kendall G. Byler i William N. Setzer. "Essential Oils as Antiviral Agents, Potential of Essential Oils to Treat SARS-CoV-2 Infection: An In-Silico Investigation". International Journal of Molecular Sciences 21, nr 10 (12.05.2020): 3426. http://dx.doi.org/10.3390/ijms21103426.
Pełny tekst źródłaMa, Hongli, Han Wen, Zhiyuan Xue, Guojun Li i Zhaolei Zhang. "RNANetMotif: Identifying sequence-structure RNA network motifs in RNA-protein binding sites". PLOS Computational Biology 18, nr 7 (12.07.2022): e1010293. http://dx.doi.org/10.1371/journal.pcbi.1010293.
Pełny tekst źródłaYan, Yumeng, Di Zhang, Pei Zhou, Botong Li i Sheng-You Huang. "HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy". Nucleic Acids Research 45, W1 (17.05.2017): W365—W373. http://dx.doi.org/10.1093/nar/gkx407.
Pełny tekst źródłaSharma, Arun Dev, Inderjeet Kaur i Amrita Chauhan. "Targeting H3N2 influenza virus RNA dependent RNA polymerase dependent inhibitory activity by principal components from latex of Calotropis gigantean". Trends in Horticulture 6, nr 2 (17.11.2023): 2940. http://dx.doi.org/10.24294/th.v6i2.2940.
Pełny tekst źródłaEmmanuel Chuks Oranu, Esther Oluchukwu Eze, Adanna Ijeawele, Chisom George Obidimma, Belinda Chinecherem Umeh, Perpetua Chinonyelum Ejezie i IC Uzochukwu. "Validation of the binding affinities and stabilities of ivermectin and moxidectin against Sars-CoV-2 receptors using molecular docking and molecular dynamics simulation". GSC Biological and Pharmaceutical Sciences 26, nr 1 (30.01.2024): 303–14. http://dx.doi.org/10.30574/gscbps.2024.26.1.0030.
Pełny tekst źródłaIvashkina, Natalia, Benno Wölk, Volker Lohmann, Ralf Bartenschlager, Hubert E. Blum, François Penin i Darius Moradpour. "The Hepatitis C Virus RNA-Dependent RNA Polymerase Membrane Insertion Sequence Is a Transmembrane Segment". Journal of Virology 76, nr 24 (15.12.2002): 13088–93. http://dx.doi.org/10.1128/jvi.76.24.13088-13093.2002.
Pełny tekst źródłaAsadzadeh, Homayoun, Ali Moosavi, Georgios Alexandrakis i Mohammad R. K. Mofrad. "Atomic Scale Interactions between RNA and DNA Aptamers with the TNF-α Protein". BioMed Research International 2021 (16.07.2021): 1–11. http://dx.doi.org/10.1155/2021/9926128.
Pełny tekst źródłaKappel, Kalli, i Rhiju Das. "Sampling Native-like Structures of RNA-Protein Complexes through Rosetta Folding and Docking". Structure 27, nr 1 (styczeń 2019): 140–51. http://dx.doi.org/10.1016/j.str.2018.10.001.
Pełny tekst źródłaThakur, Priti, Jowad Atway, Patrick A. Limbach i Balasubrahmanyam Addepalli. "RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site". International Journal of Molecular Sciences 23, nr 13 (24.06.2022): 7021. http://dx.doi.org/10.3390/ijms23137021.
Pełny tekst źródłaEbenezer, Oluwakemi, Nkululeko Damoyi, Maryam A. Jordaan i Michael Shapi. "Unveiling of Pyrimidindinones as Potential Anti-Norovirus Agents—A Pharmacoinformatic-Based Approach". Molecules 27, nr 2 (7.01.2022): 380. http://dx.doi.org/10.3390/molecules27020380.
Pełny tekst źródłaHe, Jiahua, Jun Wang, Huanyu Tao, Yi Xiao i Sheng-You Huang. "HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures". Nucleic Acids Research 47, W1 (22.05.2019): W35—W42. http://dx.doi.org/10.1093/nar/gkz412.
Pełny tekst źródłaAdasme, Melissa F., Katja L. Linnemann, Sarah Naomi Bolz, Florian Kaiser, Sebastian Salentin, V. Joachim Haupt i Michael Schroeder. "PLIP 2021: expanding the scope of the protein–ligand interaction profiler to DNA and RNA". Nucleic Acids Research 49, W1 (5.05.2021): W530—W534. http://dx.doi.org/10.1093/nar/gkab294.
Pełny tekst źródłaNAWAZ, A., i B. IJAZ. "ANTIVIRAL SCREENING OF AZADIRACHTA INDICA PHYTOCHEMICALS AS DENGUE NS5 INHIBITOR: A MOLECULAR DOCKING APPROACH". Biological and Clinical Sciences Research Journal 2023, nr 1 (27.11.2023): 560. http://dx.doi.org/10.54112/bcsrj.v2023i1.560.
Pełny tekst źródłaYIP, Ryan Pak Hong, Doris Ching Ying Kwok, Louis Tung Faat Lai, Siu-Ming Ho, Ivan Chun Kit Wong, Chi-Ping Chan, Wilson Chun Yu Lau i Jacky Chi Ki Ngo. "SRPK2 Mediates HBV Core Protein Phosphorylation and Capsid Assembly via Docking Interaction". PLOS Pathogens 20, nr 2 (7.02.2024): e1011978. http://dx.doi.org/10.1371/journal.ppat.1011978.
Pełny tekst źródłaDickerhoff, Jonathan, Kassandra R. Warnecke, Kaibo Wang, Nanjie Deng i Danzhou Yang. "Evaluating Molecular Docking Software for Small Molecule Binding to G-Quadruplex DNA". International Journal of Molecular Sciences 22, nr 19 (6.10.2021): 10801. http://dx.doi.org/10.3390/ijms221910801.
Pełny tekst źródłaLi, Gang, Wei Zhou, Xiurong Zhao i Ying Xie. "In Silico Molecular Docking and Interaction Analysis of Traditional Chinese Medicines Against SARS-CoV-2 Receptor". Natural Product Communications 16, nr 5 (maj 2021): 1934578X2110150. http://dx.doi.org/10.1177/1934578x211015030.
Pełny tekst źródłaSharma, Arun Dev, i Inderjeet Kaur. "Targeting H3N2 Influenza Virus RNA-dependent RNA Polymerase by Using Bioactives from Essential Oils from Eucalyptus polybrachtea, Cymbopogon citratus and Cymbopogon khasianus". Biology, Medicine, & Natural Product Chemistry 12, nr 2 (15.09.2023): 515–24. http://dx.doi.org/10.14421/biomedich.2023.122.515-524.
Pełny tekst źródłaMustafa, Ghulam, Hafiza Salaha Mahrosh, Mahwish Salman, Muhammad Ali, Rawaba Arif, Sibtain Ahmed i Hossam Ebaid. "In Silico Analysis of Honey Bee Peptides as Potential Inhibitors of Capripoxvirus DNA-Directed RNA Polymerase". Animals 13, nr 14 (12.07.2023): 2281. http://dx.doi.org/10.3390/ani13142281.
Pełny tekst źródłaDawood, Ali A. "Influence of SARS-CoV-2 variants’ spike glycoprotein and RNA-dependent RNA polymerase (nsp12) mutations on remdesivir docking residues". Medical Immunology (Russia) 24, nr 3 (13.07.2022): 617–28. http://dx.doi.org/10.15789/1563-0625-ios-2486.
Pełny tekst źródłaBui, Thanh Tung, Bao Kim Nguyen, Minh Ngoc Le, The Toan Nguyen i The Hai Pham. "In silico screening of drug inhibitors of SARS-CoV-2RNA-dependent RNA polymerase target". Ministry of Science and Technology, Vietnam 63, nr 4 (15.12.2021): 47–54. http://dx.doi.org/10.31276/vjste.63(4).47-54.
Pełny tekst źródłaYamkela, Mthembu, Zingisa Sitobo i Xolani H. Makhoba. "In Silico Analysis of SARS-CoV-2 Non-Structural Proteins Reveals an Interaction with the Host’s Heat Shock Proteins That May Contribute to Viral Replications and Development". Current Issues in Molecular Biology 45, nr 12 (18.12.2023): 10225–47. http://dx.doi.org/10.3390/cimb45120638.
Pełny tekst źródłaWang Erickson, Anna F., Padraig Deighan, Shanshan Chen, Kelsey Barrasso, Cinthia P. Garcia, Santiago Martínez‐Lumbreras, Caterina Alfano i in. "A novel RNA polymerase‐binding protein that interacts with a sigma‐factor docking site". Molecular Microbiology 105, nr 4 (19.06.2017): 652–62. http://dx.doi.org/10.1111/mmi.13724.
Pełny tekst źródłaPérez-Cano, Laura, Brian Jiménez-García i Juan Fernández-Recio. "A protein-RNA docking benchmark (II): Extended set from experimental and homology modeling data". Proteins: Structure, Function, and Bioinformatics 80, nr 7 (8.05.2012): 1872–82. http://dx.doi.org/10.1002/prot.24075.
Pełny tekst źródłaLee, Gwangho, Gun Hyuk Jang, Ho Young Kang i Giltae Song. "Predicting aptamer sequences that interact with target proteins using an aptamer-protein interaction classifier and a Monte Carlo tree search approach". PLOS ONE 16, nr 6 (25.06.2021): e0253760. http://dx.doi.org/10.1371/journal.pone.0253760.
Pełny tekst źródłaRen, Yixin, Sihui Long i Shuang Cao. "Molecular Docking and Virtual Screening of an Influenza Virus Inhibitor That Disrupts Protein–Protein Interactions". Viruses 13, nr 11 (5.11.2021): 2229. http://dx.doi.org/10.3390/v13112229.
Pełny tekst źródłaPraveen, Rajkumar. "Insights from the molecular docking aided interaction analysis of HfQ with small RNAs". Bioinformation 18, nr 4 (30.04.2022): 425–31. http://dx.doi.org/10.6026/97320630018425.
Pełny tekst źródłaSharp, Kumar. "Alternatives to Remdesivir: Drug repurposing for inhibition of SARS-CoV2 RNA dependent RNA polymerase". Journal of Pharmacological and Pharmaceutical Research 1, nr 1 (2024): 32. http://dx.doi.org/10.5455/jppr.20240402024133.
Pełny tekst źródłaAbdelaal Ahmed Mahmoud M. Alkhatip, Ahmed, Michail Georgakis, Lucio R. Montero Valenzuela, Mohamed Hamza, Ehab Farag, Jaqui Hodgkinson, Hisham Hosny i in. "Metal-Bound Methisazone; Novel Drugs Targeting Prophylaxis and Treatment of SARS-CoV-2, a Molecular Docking Study". International Journal of Molecular Sciences 22, nr 6 (15.03.2021): 2977. http://dx.doi.org/10.3390/ijms22062977.
Pełny tekst źródłaIvan, Jeremias, Rizky Nurdiansyah i Arli Aditya Parikesit. "Computational modeling of AGO-mediated molecular inhibition of ARF6 by miR-145". Indonesian Journal of Biotechnology 25, nr 2 (2.12.2020): 102. http://dx.doi.org/10.22146/ijbiotech.55631.
Pełny tekst źródłaRehman, Muhammad Fayyaz ur, Shahzaib Akhter, Aima Iram Batool, Zeliha Selamoglu, Mustafa Sevindik, Rida Eman, Muhammad Mustaqeem i in. "Effectiveness of Natural Antioxidants against SARS-CoV-2? Insights from the In-Silico World". Antibiotics 10, nr 8 (20.08.2021): 1011. http://dx.doi.org/10.3390/antibiotics10081011.
Pełny tekst źródłaSantiago-Frangos, Andrew, Kathrin S. Fröhlich, Jeliazko R. Jeliazkov, Ewelina M. Małecka, Giada Marino, Jeffrey J. Gray, Ben F. Luisi, Sarah A. Woodson i Steven W. Hardwick. "Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation". Proceedings of the National Academy of Sciences 116, nr 22 (10.05.2019): 10978–87. http://dx.doi.org/10.1073/pnas.1814428116.
Pełny tekst źródłaPrabahar, Archana, Subashini Swaminathan, Arul Loganathan i Ramalingam Jegadeesan. "Identification of Novel Inhibitors for Tobacco Mosaic Virus Infection in Solanaceae Plants". Advances in Bioinformatics 2015 (18.10.2015): 1–9. http://dx.doi.org/10.1155/2015/198214.
Pełny tekst źródłaSari, Dewi Ratih Tirto, Heny Yusuf, Laily Sifaiyah, Nur Dina Camelia i Yohanes Bare. "Kajian Farmakoinformatika Senyawa Brazilin dan 3-O-Methyl Brazilin Caesalpinia sappan Sebagai Terapi Demam Berdarah Dengue". al-Kimiya 9, nr 1 (1.07.2022): 19–25. http://dx.doi.org/10.15575/ak.v9i1.17613.
Pełny tekst źródłaAlhossary, Amr, Yaw Awuni, Chee Keong Kwoh i Yuguang Mu. "Proposing drug fragments for dengue virus NS5 protein". Journal of Bioinformatics and Computational Biology 16, nr 03 (czerwiec 2018): 1840017. http://dx.doi.org/10.1142/s0219720018400176.
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