Gotowa bibliografia na temat „Population genetic connectivity”

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Artykuły w czasopismach na temat "Population genetic connectivity"

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Putri, S. N. N., G. R. Maharani, M. Farhan, et al. "Population connectivity and genetic diversity population connectivity of Rabbitfish (Siganus canaliculatus) among Bangladesh, China and Indonesia." IOP Conference Series: Earth and Environmental Science 1033, no. 1 (2022): 012043. http://dx.doi.org/10.1088/1755-1315/1033/1/012043.

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Abstract Population genetics studies genetic variation involving gene and allele frequencies in spatial and temporal space. Genetic information can be used in conservation management through identification of phylogenetic tree reconstructions, genetic distance, genetic structure, and haplotype connectivity to maintain population existence. The samples used were primary genetic data of Siganus canaliculatus taken from Indonesian waters and secondary data accessed from the BOLD SYSTEM database from several locations, namely Indonesia, China, and Bangladesh. This research was conducted to determine the kinship of Siganus canaliculatus in Indonesia, China, and Bangladesh through genetic analysis. The results of genetic distance analysis showed that the baronang fish samples from China and Bangladesh had a close relationship with a value of 0.0534 while samples from Indonesia and Bangladesh had the farthest relationship with a value of 0.8212. Reconstruction of the phylogeny tree at maximum likelihood can show convergence within the same clade. The results of the reconstruction of the phylogeny tree showed that the species from Ambon, Bali, and Lombok came from the same clade while samples from Bangladesh had different clades with the furthest distance. The results of structural analysis and genetic diversity showed that samples from Bangladesh, China, and Indonesia had different DNA characteristics. This is correlated with the form of network integration in haplotype connectivity analysis.
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Marandel, Florianne, Pascal Lorance, Marco Andrello, et al. "Insights from genetic and demographic connectivity for the management of rays and skates." Canadian Journal of Fisheries and Aquatic Sciences 75, no. 8 (2018): 1291–302. http://dx.doi.org/10.1139/cjfas-2017-0291.

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Studying demographic and genetic connectivity can help assess marine metapopulation structure. Rays and skates have no larval phase; hence, population connectivity can only result from active movement of individuals. Using thornback ray (Raja clavata) in European waters as a case study, demographic and genetic connectivity were studied for 11 putative populations with unequal population abundances and two hypotheses of dispersal rates. Genetic simulation results highlighted three large metapopulations: in the Mediterranean, around the Azores, and on the Northeast Atlantic shelf. Demographic results highlighted a finer population structure indicating that several pairs of putative populations might be demographically linked. Results were highly sensitive to dispersal assumptions and relative population abundances, which provided insights into the potential magnitude of genetic and demographic connectivity differences. Accounting for demographic connectivity appears to be crucial for managing and conserving rays and skates, while genetic connectivity provides a longer-term perspective and less subtle spatial structures. Moreover, accounting for heterogeneity in population abundances is a key factor for determining or interpreting metapopulation connectivity.
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Jangjoo, Maryam, Stephen F. Matter, Jens Roland, and Nusha Keyghobadi. "Connectivity rescues genetic diversity after a demographic bottleneck in a butterfly population network." Proceedings of the National Academy of Sciences 113, no. 39 (2016): 10914–19. http://dx.doi.org/10.1073/pnas.1600865113.

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Demographic bottlenecks that occur when populations fluctuate in size erode genetic diversity, but that diversity can be recovered through immigration. Connectivity among populations and habitat patches in the landscape enhances immigration and should in turn facilitate recovery of genetic diversity after a sudden reduction in population size. For the conservation of genetic diversity, it may therefore be particularly important to maintain connectivity in the face of factors that increase demographic instability, such as climate change. However, a direct link between connectivity and recovery of genetic diversity after a demographic bottleneck has not been clearly demonstrated in an empirical system. Here, we show that connectivity of habitat patches in the landscape contributes to the maintenance of genetic diversity after a demographic bottleneck. We were able to monitor genetic diversity in a network of populations of the alpine butterfly, Parnassius smintheus, before, during, and after a severe reduction in population size that lasted two generations. We found that allelic diversity in the network declined after the demographic bottleneck but that less allelic diversity was lost from populations occupying habitat patches with higher connectivity. Furthermore, the effect of connectivity on allelic diversity was important during the demographic recovery phase. Our results demonstrate directly the ability of connectivity to mediate the rescue of genetic diversity in a natural system.
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Caplins, Serena A., Kimberly J. Gilbert, Claudia Ciotir, Jens Roland, Stephen F. Matter, and Nusha Keyghobadi. "Landscape structure and the genetic effects of a population collapse." Proceedings of the Royal Society B: Biological Sciences 281, no. 1796 (2014): 20141798. http://dx.doi.org/10.1098/rspb.2014.1798.

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Both landscape structure and population size fluctuations influence population genetics. While independent effects of these factors on genetic patterns and processes are well studied, a key challenge is to understand their interaction, as populations are simultaneously exposed to habitat fragmentation and climatic changes that increase variability in population size. In a population network of an alpine butterfly, abundance declined 60–100% in 2003 because of low over-winter survival. Across the network, mean microsatellite genetic diversity did not change. However, patch connectivity and local severity of the collapse interacted to determine allelic richness change within populations, indicating that patch connectivity can mediate genetic response to a demographic collapse. The collapse strongly affected spatial genetic structure, leading to a breakdown of isolation-by-distance and loss of landscape genetic pattern. Our study reveals important interactions between landscape structure and temporal demographic variability on the genetic diversity and genetic differentiation of populations. Projected future changes to both landscape and climate may lead to loss of genetic variability from the studied populations, and selection acting on adaptive variation will likely occur within the context of an increasing influence of genetic drift.
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Padrón, Mariana, and Katell Guizien. "Modelling the effect of demographic traits and connectivity on the genetic structuration of marine metapopulations of sedentary benthic invertebrates." ICES Journal of Marine Science 73, no. 7 (2015): 1935–45. http://dx.doi.org/10.1093/icesjms/fsv158.

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Abstract Accounting for connectivity is essential in marine spatial planning and the proper design and management of marine protected areas, given that their effectiveness depends on the patterns of dispersal and colonization between protected and non-protected areas. The genetic structure of populations is commonly used to infer connectivity among distant populations. Here, we explore how population genetic structure is affected by pre- and settlement limitations with a spatially explicit coupled metapopulation-gene flow model that simulates the effect of demographic fluctuations on the allele frequencies of a set of populations. We show that in closed populations, regardless of population growth rate, the maintenance of genetic diversity at saturating initial population density increases with species life expectancy as a result of density-dependent recruitment control. Correlatively, at low initial population density, the time at which a population begins to lose its genetic diversity is driven larval and post-settlement mortality (comprised in the recruitment success parameter)—the larger the recruitment success, the stronger the genetic drift. Different spatial structures of connectivity established for soft bottom benthic invertebrates in the Gulf of Lions (NW Mediterranean, France) lead to very different results in the spatial patterns of genetic structuration of the metapopulation, with high genetic drift in sites where the local retention rate was larger than 2%. The effect of recruitment failure and the loss of key source populations on heterozygosity confirm that transient demographic fluctuations help maintain genetic diversity in a metapopulation. This study highlights the role of intraspecific settlement limitations due to lack of space when the effective number of breeders approaches saturating capacity, causing a strong reduction in effective reproduction. The present model allows to: (i) disentangle the relative contribution of local demography and environmental connectivity in shaping seascape genetics, and (ii) perform in silico evaluations of different scenarios for marine spatial planning.
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Weckworth, Byron V., Marco Musiani, Nicholas J. DeCesare, Allan D. McDevitt, Mark Hebblewhite, and Stefano Mariani. "Preferred habitat and effective population size drive landscape genetic patterns in an endangered species." Proceedings of the Royal Society B: Biological Sciences 280, no. 1769 (2013): 20131756. http://dx.doi.org/10.1098/rspb.2013.1756.

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Landscape genetics provides a framework for pinpointing environmental features that determine the important exchange of migrants among populations. These studies usually test the significance of environmental variables on gene flow, yet ignore one fundamental driver of genetic variation in small populations, effective population size, N e . We combined both approaches in evaluating genetic connectivity of a threatened ungulate, woodland caribou. We used least-cost paths to calculate matrices of resistance distance for landscape variables (preferred habitat, anthropogenic features and predation risk) and population-pairwise harmonic means of N e , and correlated them with genetic distances, F ST and D c . Results showed that spatial configuration of preferred habitat and N e were the two best predictors of genetic relationships. Additionally, controlling for the effect of N e increased the strength of correlations of environmental variables with genetic distance, highlighting the significant underlying effect of N e in modulating genetic drift and perceived spatial connectivity. We therefore have provided empirical support to emphasize preventing increased habitat loss and promoting population growth to ensure metapopulation viability.
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Campos, João Carlos, Asghar Mobaraki, Elham Abtin, Raquel Godinho, and José Carlos Brito. "Preliminary assessment of genetic diversity and population connectivity of the Mugger Crocodile in Iran." Amphibia-Reptilia 39, no. 1 (2018): 126–31. http://dx.doi.org/10.1163/15685381-16000173.

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The Mugger Crocodile (Crocodylus palustris) is a threatened reptile inhabiting the Indian Sub-continent and Western Asia. Despite its “Vulnerable” conservation status, data about population genetic structure and connectivity are unavailable. This study makes a preliminary assessment of the genetic diversity, population structure and habitat connectivity ofC. palustrisin Iran. Ten tissue samples collected along the Sarbaz-Bahukalat basins were analysed and a set of 12 microsatellites was genotyped. Genetic diversity indices were estimated and population substructuring was assessed through Bayesian clustering analysis. Potential connectivity was verified through Remote Sensing water indexes, further implemented in a circuit analysis. Low genetic diversity was observed (mean observed heterozygosity = 0.35; mean expected heterozygosity = 0.43) and no population structure was found (K = 1). Water index and circuit analysis suggested possible connection among sites. This study highlights the potential vulnerability of crocodile populations and the importance of habitat connectivity for their persistence in the arid regions of Iran.
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Eschenroeder, Jackman C., and James H. Roberts. "Habitat loss, fragmentation, and the genetic status of Roanoke bass." Canadian Journal of Fisheries and Aquatic Sciences 77, no. 2 (2020): 375–87. http://dx.doi.org/10.1139/cjfas-2019-0103.

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Roanoke bass (Ambloplites cavifrons) persist in five river basins in the eastern US, where they are threatened by invasive species, habitat loss and degradation, and hydrologic fragmentation. We conducted the first conservation genetic study of A. cavifrons, analyzing variation at 19 nuclear microsatellite DNA loci and the cytochrome b mitochondrial DNA gene to estimate population structure and demography, genetic relationships among populations, and the role of landscape features in regulating genetic diversity and differentiation. Most streams harbored genetically distinguishable populations, with high connectivity among reaches within streams but no contemporary dispersal among streams. In contrast, mitochondrial divergence within and among basins was weak, suggesting historically higher range-wide connectivity. Most populations exhibited small effective population sizes and evidence of past population bottlenecks. Genetic diversity correlated positively with patch size but negatively with watershed urban and agricultural development, suggesting that habitat loss, degradation, and fragmentation have acted in concert to reduce population viability. Mitigating these impacts may require a combination of tactics, including restoring habitat, limiting the spread of invasive competitors, and reestablishing historical connectivity.
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Douglas, Marlis R., Steven M. Mussmann, Tyler K. Chafin, et al. "Population connectivity in voles (Microtus sp.) as a gauge for tall grass prairie restoration in midwestern North America." PLOS ONE 16, no. 12 (2021): e0260344. http://dx.doi.org/10.1371/journal.pone.0260344.

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Ecological restoration can promote biodiversity conservation in anthropogenically fragmented habitats, but effectiveness of these management efforts need to be statistically validated to determine ’success.’ One such approach is to gauge the extent of recolonization as a measure of landscape permeability and, in turn, population connectivity. In this context, we estimated dispersal and population connectivity in prairie vole (Microtus ochrogaster; N = 231) and meadow vole (M. pennsylvanicus; N = 83) within five tall-grass prairie restoration sites embedded within the agricultural matrix of midwestern North America. We predicted that vole dispersal would be constrained by the extent of agricultural land surrounding restored habitat patches, spatially isolating vole populations and resulting in significant genetic structure. We first employed genetic assignment tests based on 15 microsatellite DNA loci to validate field-derived species-designations, then tested reclassified samples with multivariate and Bayesian clustering to assay for spatial and temporal genetic structure. Population connectivity was further evaluated by calculating pairwise FST, then potential demographic effects explored by computing migration rates, effective population size (Ne), and average relatedness (r). Genetic species assignments reclassified 25% of initial field identifications (N = 11 M. ochrogaster; N = 67 M. pennsylvanicus). In M. ochrogaster population connectivity was high across the study area, reflected in little to no spatial or temporal genetic structure. In M. pennsylvanicus genetic structure was detected, but relatedness estimates identified it as kin-clustering instead, underscoring social behavior among populations rather than spatial isolation as the cause. Estimates of Ne and r were stable across years, reflecting high dispersal and demographic resilience. Combined, these metrics suggest the agricultural matrix is highly permeable for voles and does not impede dispersal. High connectivity observed confirms that the restored landscape is productive and permeable for specific management targets such as voles and also demonstrates population genetic assays as a tool to statistically evaluate effectiveness of conservation initiatives.
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Stafford-Bell, R. E., W. F. D. van Dongen, R. W. Robinson, and A. A. Chariton. "Connectivity of the seagrass Zostera muelleri within south-eastern Australia." Marine and Freshwater Research 70, no. 8 (2019): 1056. http://dx.doi.org/10.1071/mf18333.

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Contemporary oceanic conditions and local dispersal of propagules influence the genetic diversity and connectivity among seagrass populations. The degree of connectivity between populations of Zostera muelleri in south-eastern Australia is unknown. In this study we examined genetic connectivity among 25 sites containing Z. muelleri using nine polymorphic microsatellite DNA loci. We hypothesised minimal sharing of genetic material between distant populations and a degree of connectivity between local populations. Genotypic diversity was high, with 64% of populations having unique multilocus genotypes (MLGs), indicating the importance of sexual reproduction. Two sites shared MLGs, which may be due to the dispersal and recruitment of vegetative propagules. Genetic differentiation was observed between most sites. With the exception of two outlying sites, two genetic population clusters were identified across the studied populations. Regionally, the populations have high clonal diversity, are strongly differentiated and generally exist in isolation from one another. However, non-significant within-estuary differentiation was observed for three estuaries, indicating a degree of connectivity. The results of this research improve our understanding of the connectivity of Z. muelleri populations in the region, an important process for managing this ecosystem engineer.
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