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Artykuły w czasopismach na temat "Microbial populations – Antarctica"
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Sommers, Pacifica, Rafaela S. Fontenele, Tayele Kringen, Simona Kraberger, Dorota L. Porazinska, John L. Darcy, Steven K. Schmidt i Arvind Varsani. "Single-Stranded DNA Viruses in Antarctic Cryoconite Holes". Viruses 11, nr 11 (4.11.2019): 1022. http://dx.doi.org/10.3390/v11111022.
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Antarctic cryoconite holes, or small melt-holes in the surfaces of glaciers, create habitable oases for isolated microbial communities with tightly linked microbial population structures. Viruses may influence the dynamics of polar microbial communities, but the viromes of the Antarctic cryoconite holes have yet to be characterized. We characterize single-stranded DNA (ssDNA) viruses from three cryoconite holes in the Taylor Valley, Antarctica, using metagenomics. Half of the assembled metagenomes cluster with those in the viral family Microviridae (n = 7), and the rest with unclassified circular replication associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses (n = 7). An additional 18 virus-like circular molecules encoding either a Rep, a capsid protein gene, or other unidentified but viral-like open reading frames were identified. The samples from which the genomes were identified show a strong gradient in microbial diversity and abundances, and the number of viral genomes detected in each sample mirror that gradient. Additionally, one of the CRESS genomes assembled here shares ~90% genome-wide pairwise identity with a virus identified from a freshwater pond on the McMurdo Ice Shelf (Antarctica). Otherwise, the similarity of these viruses to those previously identified is relatively low. Together, these patterns are consistent with the presence of a unique regional virome present in fresh water host populations of the McMurdo Dry Valley region.
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Vicente, Javier, Miguel de Celis, Alejandro Alonso, Domingo Marquina i Antonio Santos. "Microbial Communities Present in Hydrothermal Sediments from Deception Island, Antarctica". Microorganisms 9, nr 8 (30.07.2021): 1631. http://dx.doi.org/10.3390/microorganisms9081631.
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Deception Island is a geothermal location in Antarctica that presents active fumaroles, which confers unique characteristics to this habitat. Several studies about microbial communities in Antarctica have been carried out, nevertheless, Antarctic microbiota is still partially unknown. Here we present a multidisciplinary study about sediments obtained by deposition during 4 years in which several approaches have been considered for their characterization. First, a physicochemical characterization, using ionic chromatography and mass spectrometry for the determination of most abundant ions (chloride and sulphate) and elements (mainly silicon), was conducted. In addition, the total microbial community was studied using a metataxonomical approach, revealing a bacterial community dominated by Proteobacteria and Thaumarchaeota as the main archaeal genera and a fungal community mainly composed by Aspergillaceae. Culture-dependent studies showed low microbial diversity, only achieving the isolation of Bacillus-related species, some of them thermophilic, and the isolation of common fungi of Aspergillus or Penicillium spp. Furthermore, diatoms were detected in the sediment and characterized attending to their morphological characteristics using scanning electron microscopy. The study reveals a high influence of the physicochemical conditions in the microbial populations and their distribution, offering valuable data on the interaction between the island and water microbiota.
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Rico, Eugenio, i Antonio Quesada. "Distribution and ecology of chironomids (Diptera, Chironomidae) on Byers Peninsula, Maritime Antarctica". Antarctic Science 25, nr 2 (20.03.2013): 288–91. http://dx.doi.org/10.1017/s095410201200096x.
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AbstractThis study describes the ecology and distribution of the only two native Antarctic insects, the chironomid species Parochlus steinenii and Belgica antarctica, both found on Byers Peninsula (Livingston Island, South Shetland Islands). Parochlus steinenii inhabits lakes of the central plateau of Byers Peninsula associated with aquatic mosses on the bottom of lakes and in some streams of the South Beach area. Some streams have stable populations which are able to complete their life cycle while other streams have temporary, unstable populations. Belgica antarctica also inhabits streams running through mosses located in the South Beach area. Our data indicate that this species has a limited dispersal capability which is positively light activated for both adults and pupae. Both Antarctic midge species coexists on Byers Peninsula and share some stretches of streams. Isotopic studies show a non-selective feeding regime for both species with mixed carbon sources associated with both biofilm/microbial mats and mosses.
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Wadham, J. L., R. De'ath, F. M. Monteiro, M. Tranter, A. Ridgwell, R. Raiswell i S. Tulaczyk. "The potential role of the Antarctic Ice Sheet in global biogeochemical cycles". Earth and Environmental Science Transactions of the Royal Society of Edinburgh 104, nr 1 (marzec 2013): 55–67. http://dx.doi.org/10.1017/s1755691013000108.
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ABSTRACTOnce thought to be devoid of life, the Antarctic Ice Sheet is now known to be a dynamic reservoir of organic carbon and metabolically active microbial cells. At the ice-bed interface, subglacial lake and sedimentary environments support low diversity microbial populations, adapted to perennial cold, anoxia and lack of light. The dynamic exchange of water between these shallow environments conveys meltwaters and associated sediments into the coastal ocean. This, together with the release of iceberg-rafted debris to more distal coastal environments, could be important for sustaining primary productivity in the iron-limited Southern Ocean, via the release of associated nutrients and bioavailable iron. We estimate the magnitude and review the wider impacts of the potential export of nutrients (N, P, C, Si and bioavailable Fe) dissolved and associated with suspended sediments in Antarctic runoff and entombed in iceberg rafted debris. Located beneath subglacial lakes and the subglacial till complex are deep sedimentary basins up to 14 km thick, located largely around the Antarctic periphery. These sedimentary basins are largely hydrologically decoupled from shallower lake and till environments by the presence of highly consolidated sediments which limit the penetration of glacial meltwaters to depth. They provide extensive habitats for sustained microbial activity over Ma timescales, and are likely to be a focal point for the anaerobic cycling of organic carbon and other elements in the deep sub-surface. Organic carbon buried in these basins during ice sheet formation is thought to be microbially cycled to methane gas, and the methane largely stored as hydrate within sediments, stabilised by the high pressure/low temperature conditions. We conclude that the export of nutrients and biogenic gases from deep and shallow subglacial Antarctic environments designates Antarctica as a potentially important component of the Earth's carbon cycle, and highlight the importance of evaluating these potential impacts further via global and regional-scale biogeochemical modelling.
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POWELL, SHANE M., MARTIN J. RIDDLE, IAN SNAPE i JONATHAN S. STARK. "Location and DGGE methodology can influence interpretation of field experimental studies on the response to hydrocarbons by Antarctic benthic microbial community". Antarctic Science 17, nr 3 (17.08.2005): 353–60. http://dx.doi.org/10.1017/s0954102005002786.
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A field experiment investigating the effect of oil contamination on benthic microbial communities was conducted near Casey Station, East Antarctica. Defaunated sediment was treated with a mixture of Special Antarctic Blend diesel and lubricating oil and deployed in three different bays for eleven weeks. A molecular fingerprinting technique, denaturing gradient gel electrophoresis (DGGE), was used to investigate the microbial community structure. The variation between replicate samples within treatment groups indicates that the benthic microbial populations are very diverse and evenly distributed. Comparisons to determine the significance of both deployment location and hydrocarbon treatment showed that the greatest effect was from a combination of location and treatment. Detailed analysis suggests that subtle differences may be obscured by variability introduced by PCR and gel stages in DGGE, undermining this experimental approach. It is concluded that both location and hydrocarbon contamination influenced the development of the microbial communities but that the effect of hydrocarbon treatment varied with location. This has important implications for the design of future experiments on the effect of hydrocarbons on benthic communities, especially if it is intended to generalize the conclusions drawn from site specific studies.
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Namsaraev, Z., M. J. Mano, R. Fernandez i Annick Wilmotte. "Biogeography of terrestrial cyanobacteria from Antarctic ice-free areas". Annals of Glaciology 51, nr 56 (2010): 171–77. http://dx.doi.org/10.3189/172756411795931930.
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AbstractCyanobacteria inhabit the Antarctic continent and have even been observed in the most southerly ice-free areas of Antarctica (86–87° S). The highest molecular diversity of cyanobacterial communities was found in the areas located between 70° S and 80° S. Further south and further north from this zone, the diversity abruptly decreased. Seventy-nine per cent (33 of 42 operational taxonomic units) of Antarctic terrestrial cyanobacteria have a cosmopolitan distribution. Analysis of the sampling efforts shows that only three regions (southern Victoria Land, the Sør Rondane Mountains and Alexander Island) have been particularly well studied, while other areas did not receive enough attention. Although cyanobacteria possess a capacity for long-range transport, regional populations in Antarctic ice-free areas seem to exist. The cyanobacterial communities of the three most intensively studied regions, separated from each other by a distance of 3000–3400 km, had a low degree of similarity with each other. Further development of microbial biogeography demands a standardized approach. For this purpose, as a minimal standard, we suggest using the sequence of cyanobacterial 16S rRNA gene between Escherichia coli positions 405 and 780.
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Azzaro, Maurizio, Theodore T. Packard, Luis Salvador Monticelli, Giovanna Maimone, Alessandro Ciro Rappazzo, Filippo Azzaro, Federica Grilli, Ermanno Crisafi i Rosabruna La Ferla. "Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project". Nature Conservation 34 (3.05.2019): 441–75. http://dx.doi.org/10.3897/natureconservation.34.30631.
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The Ross Sea is one of the most productive areas of the Southern Ocean and includes several functionally different marine ecosystems. With the aim of identifying signs and patterns of microbial response to current climate change, seawater microbial populations were sampled at different depths, from surface to the bottom, at two Ross Sea mooring areas southeast of Victoria Land in Antarctica. This oceanographic experiment, the XX Italian Antarctic Expedition, 2004-05, was carried out in the framework of the ABIOCLEAR project as part of LTER-Italy. Here, microbial biogeochemical rates of respiration, carbon dioxide production, total community heterotrophic energy production, prokaryotic heterotrophic activity, production (by3H-leucine uptake) and prokaryotic biomass (by image analysis) were determined throughout the water column. As ancillary parameters, chlorophylla, adenosine-triphosphate concentrations, temperature and salinity were measured and reported. Microbial metabolism was highly variable amongst stations and depths. In epi- and mesopelagic zones, respiratory rates varied between 52.4–437.0 and 6.3–271.5 nanol O2l-1h-1; prokaryotic heterotrophic production varied between 0.46–29.5 and 0.3–6.11 nanog C l-1h-1; and prokaryotic biomass varied between 0.8–24.5 and 1.1–9.0 µg C l-1, respectively. The average heterotrophic energy production ranged between 570 and 103 mJ l-1h-1in upper and deeper layers, respectively. In the epipelagic layer, the Prokaryotic Carbon Demand and Prokaryotic Growth Efficiency averaged 9 times higher and 2 times lower, respectively, than in the mesopelagic one. The distribution of plankton metabolism and organic matter degradation was mainly related to the different hydrological and trophic conditions. In comparison with previous research, the Ross Sea results, here, evidenced a relatively impoverished oligotrophic microbial community, throughout the water column.
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Esposito, R. M. M., S. A. Spaulding, D. M. McKnight, B. Van de Vijver, K. Kopalová, D. Lubinski, B. Hall i T. Whittaker. "Inland diatoms from the McMurdo Dry Valleys and James Ross Island, Antarctica". Botany 86, nr 12 (grudzień 2008): 1378–92. http://dx.doi.org/10.1139/b08-100.
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Diatom taxa present in the inland streams and lakes of the McMurdo Dry Valleys and James Ross Island, Antarctica, are presented in this paper. A total of nine taxa are illustrated, with descriptions of four new species ( Luticola austroatlantica sp. nov., Luticola dolia sp. nov., Luticola laeta sp. nov., Muelleria supra sp. nov.). In the perennially ice-covered lakes of the McMurdo Dry Valleys, diatoms are confined to benthic mats within the photic zone. In streams, diatoms are attached to benthic surfaces and within the microbial mat matrix. One species, L. austroatlantica, is found on James Ross Island, of the southern Atlantic archipelago, and the McMurdo Dry Valleys. The McMurdo Dry Valley populations are at the lower range of the size spectrum for the species. Streams flow for 6–10 weeks during the austral summer, when temperatures and solar radiation allow glacial ice to melt. The diatom flora of the region is characterized by species assemblages favored under harsh conditions, with naviculoid taxa as the dominant group and several major diatom groups conspicuously absent.
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Smith, Matthew C., John P. Bowman, Fiona J. Scott i Martin A. Line. "Sublithic bacteria associated with Antarctic quartz stones". Antarctic Science 12, nr 2 (czerwiec 2000): 177–84. http://dx.doi.org/10.1017/s0954102000000237.
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Quartz stone sublithic cyanobacterial communities are common throughout the Vestfold Hills, Eastern Antarctica (68°S 78°E) contributing biomass in areas otherwise devoid of any type of vegetation. In this study, the sublithic microbial community and underlying soil was investigated using a variety of traditional and molecular methods. Although direct epifluorescent counts of the sublithic growth (average 1.1 × 109 cells g−1 dry weight) and underlying soil (0.5 × 109 cells g−1 dry weight) were similar, sublith viable counts (2.1 × 107 cfu g−1 dry weight) were on average 3-orders of magnitude higher in the subliths. Enrichment and molecular analyses revealed the predominate cyanobacteria were non-halophilic, able to grow optimally at 15–20°C, and were related to the Phormidium subgroup with several distinct morphotypes and phylotypes present. Sublithic heterotrophic bacterial populations and those of underlying soils included mostly psychrotolerant taxa typical of Antarctic soil. However, psychrophilic and halophilic bacteria, mostly members of the alpha subdivision of the Proteobacteria and the order Cytophagales, were abundant in the sublithic growth film (20–40% of the viable count and about 50% of isolated individual taxa) but absent from underlying soils. It is suggested that quartz stone subliths might constitute a “refuge” for psychrophilic bacteria.
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Goncharov, A. E., A. P. Solomenny, A. L. Panin, S. E. Grigoriev, M. Yu Cheprasov, Ya A. Ahremenko, V. V. Kolodzieva, N. E. Goncharov i L. A. Kraeva. "Assessing Serratia spp. pathogenic potential from cryogenic habitats". Russian Journal of Infection and Immunity 11, nr 3 (23.06.2021): 585–90. http://dx.doi.org/10.15789/2220-7619-ass-1593.
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The genus Serratia are opportunistic bacteria widely spread in natural environment. At the same time, this bacterial genus consists of the species associated with outbreaks of nosocomial infections. Serratia species are found in extreme habitats, but pathogenic potential of polyextremophilic strains in this genus remains unexplored. The aim of this study was to compare the genomes of two Serratia strains isolated in polar regions, primarily examining genetic factors of virulence and adaptation to cryogenic environment. During the 56th Russian Antarctic Expedition the Serratia liquefaciens 72 strain was isolated from a guano sample of the Adelie Penguin (Pygoscelis adeliae) colony on Tokarev Island (Haswell Archipelago, East Antarctica). The Serratia fonticola 5l strain was isolated from the frozen carcass of moose (Alces alces) fossils found on the Buor-Khaya Peninsula near the Laptev Sea coast (Yakutia Region, Russia). The whole-genome sequencing of such strains allowed to reveal genetic structures evidencing about their successful adaptation to low temperatures. Thus, it was found that both genomes contain genes encoding the main cold shock proteins, phylogenetically close to the corresponding genes in the hypobarotolerant Serratia liquefaciens strain ATCC 27592. Furthermore, both strains bear a cluster of tc-fABCD genes determining the bacterial adhesion to epithelial tissues, and the genes for RTX toxins — adhesins, crucial factors of biofilm formation in pathogenic Gram-negative bacteria. Experimental studies confirmed the ability of Serratia liquefaciens 72 and Serratia fonticola 5l to actively form biofilms in a wide temperature range (from 6°C to 37°C). The results obtained indicate that the examined genus Serratia strains isolated in Arctica and Antarctica exert overall similar adaptation strategies to polar climate, including the ability to produce pili, show active adhesion, and biofilm formation under low temperatures. Genetic adaptive factors may also act as pathogenicity factors allowing extremotolerant Serratia strains to exert traits of opportunistic and nosocomial pathogens and spread via chilled food-borne transmission. The wide use of food technologies, such as cooling and vacuum sealing, can potentially create a new ecological niche favourable for selection of psychrotolerant and hypobarotolerant pathogens. The data obtained allow to raise a question about necessity of further studies to monitor genetic diversity among psychrophilic hypobarotolerant microbial populations possessing pathogenic and epidemic potential.
Rozprawy doktorskie na temat "Microbial populations – Antarctica"
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Jungblut, Anne Dorothee Biotechnology & Biomolecular Sciences Faculty of Science UNSW. "Characterisation of microbial Mat communities in meltwater ponds of the McMurdo ice shelf, Antarctica". 2007. http://handle.unsw.edu.au/1959.4/40496.
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The investigation presented in this thesis examined the microbial and functional diversity of the meltwater ponds Fresh, Orange and Salt Ponds on the McMurdo Ice Shelf, near Bratina Island, Antarctica. These sites were chosen because of the ecological importance and absence of detailed characterisations of their diversity and function as part of Antarctica?s largest wetland. Particular focus was on cyanobacterial diversity, nitrogen fixation and secondary metabolite production. Using 16S rRNA gene and morphological analysis a large diversity of cyanobacteria (more than 22 phylotypes) was identified with high phylogenetic similarities (up to 99% sequence identity) to cyanobacteria from mats in other regions of Antarctica. In addition biogeographical distributions were identified including potentially endemic and cosmopolitan cyanobacteria. High salinities were also connected to the change and reduction of diversity. Lipid marker analyses were performed targeting hydrocarbons, ether-linked hydrocarbons, methylated fatty acid esters (FAME), wax esters, hopanols and sterols. Lipid biomarker profiles were similar to typical cyanobacteria dominated mats with major input from microorganisms including oxygenic and anoxygenic phototrophs, obligate aerobic and anaerobic heterotrophs that conduct the metabolic processes of fermentation, sulphate reduction, sulphate and iron-oxidation, methanogeneses. Signature lipids indicative of Chloroflexus and archaea, as well as branched aliphatic alkanes with quaternary substituted carbon atoms (BAQCs), were identified for the first time in Fresh, Orange and Salt Ponds. Based on nifH gene analysis, the nitrogen fixing diversity characterised in Orange Pond consisted of cyanobacterial Nostoc sp. as well as firmicutes, beta-, gamma- and delta-proteobacteria. Acetylene reduction assays and nifH gene RNA transcript diversity identified Nostoc sp. as a main contributor of nitrogenase activity in these ponds. Furthermore, analytical methods were used to identify the cyanobacterial secondary metabolites microcystins, although the genetic basis for this production and the toxin producer could not been identified. However non-ribosomal peptide synthetases (NRPS) and polyketide synthases (PKS) genes were identified which could be the genetic basis for novel bioactives. The use of a multi-disciplinary approach synthesis and subsequent results significantly increased our understanding of the diversity and function of microbial mat communities in the unique meltwater ponds of the McMurdo Ice shelf, Antarctica.
Części książek na temat "Microbial populations – Antarctica"
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Yergeau, Etienne. "Climate Change and Microbial Populations". W Antarctic Terrestrial Microbiology, 249–61. Berlin, Heidelberg: Springer Berlin Heidelberg, 2014. http://dx.doi.org/10.1007/978-3-642-45213-0_13.
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