Artykuły w czasopismach na temat „IDPs/IDRs”
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Han, Bingqing, Chongjiao Ren, Wenda Wang, Jiashan Li i Xinqi Gong. "Computational Prediction of Protein Intrinsically Disordered Region Related Interactions and Functions". Genes 14, nr 2 (8.02.2023): 432. http://dx.doi.org/10.3390/genes14020432.
Pełny tekst źródłaCoskuner-Weber, Orkid, i Vladimir N. Uversky. "Current Stage and Future Perspectives for Homology Modeling, Molecular Dynamics Simulations, Machine Learning with Molecular Dynamics, and Quantum Computing for Intrinsically Disordered Proteins and Proteins with Intrinsically Disordered Regions". Current Protein & Peptide Science 25, nr 2 (luty 2024): 163–71. http://dx.doi.org/10.2174/0113892037281184231123111223.
Pełny tekst źródłaLiu, Meili, Akshaya K. Das, James Lincoff, Sukanya Sasmal, Sara Y. Cheng, Robert M. Vernon, Julie D. Forman-Kay i Teresa Head-Gordon. "Configurational Entropy of Folded Proteins and Its Importance for Intrinsically Disordered Proteins". International Journal of Molecular Sciences 22, nr 7 (26.03.2021): 3420. http://dx.doi.org/10.3390/ijms22073420.
Pełny tekst źródłaFelli, Isabella C., Wolfgang Bermel i Roberta Pierattelli. "Exclusively heteronuclear NMR experiments for the investigation of intrinsically disordered proteins: focusing on proline residues". Magnetic Resonance 2, nr 1 (1.07.2021): 511–22. http://dx.doi.org/10.5194/mr-2-511-2021.
Pełny tekst źródłaAhmed, Shehab S., Zaara T. Rifat, Ruchi Lohia, Arthur J. Campbell, A. Keith Dunker, M. Sohel Rahman i Sumaiya Iqbal. "Characterization of intrinsically disordered regions in proteins informed by human genetic diversity". PLOS Computational Biology 18, nr 3 (11.03.2022): e1009911. http://dx.doi.org/10.1371/journal.pcbi.1009911.
Pełny tekst źródłaAlshehri, Manal A., Manee M. Manee, Mohamed B. Al-Fageeh i Badr M. Al-Shomrani. "Genomic Analysis of Intrinsically Disordered Proteins in the Genus Camelus". International Journal of Molecular Sciences 21, nr 11 (3.06.2020): 4010. http://dx.doi.org/10.3390/ijms21114010.
Pełny tekst źródłaMedvedev, Kirill E., Jimin Pei i Nick V. Grishin. "DisEnrich: database of enriched regions in human dark proteome". Bioinformatics 38, nr 7 (30.01.2022): 1870–76. http://dx.doi.org/10.1093/bioinformatics/btac051.
Pełny tekst źródłaKastano, Kristina, Gábor Erdős, Pablo Mier, Gregorio Alanis-Lobato, Vasilis J. Promponas, Zsuzsanna Dosztányi i Miguel A. Andrade-Navarro. "Evolutionary Study of Disorder in Protein Sequences". Biomolecules 10, nr 10 (6.10.2020): 1413. http://dx.doi.org/10.3390/biom10101413.
Pełny tekst źródłaMcFadden, William M., i Judith L. Yanowitz. "idpr: A package for profiling and analyzing Intrinsically Disordered Proteins in R". PLOS ONE 17, nr 4 (18.04.2022): e0266929. http://dx.doi.org/10.1371/journal.pone.0266929.
Pełny tekst źródłaSaito, Akatsuki, Maya Shofa, Hirotaka Ode, Maho Yumiya, Junki Hirano, Toru Okamoto i Shige H. Yoshimura. "How Do Flaviviruses Hijack Host Cell Functions by Phase Separation?" Viruses 13, nr 8 (28.07.2021): 1479. http://dx.doi.org/10.3390/v13081479.
Pełny tekst źródłaGill, Michelle L., R. Andrew Byrd i Arthur G. Palmer, III. "Dynamics of GCN4 facilitate DNA interaction: a model-free analysis of an intrinsically disordered region". Physical Chemistry Chemical Physics 18, nr 8 (2016): 5839–49. http://dx.doi.org/10.1039/c5cp06197k.
Pełny tekst źródłaBrocca, Stefania, Rita Grandori, Sonia Longhi i Vladimir Uversky. "Liquid–Liquid Phase Separation by Intrinsically Disordered Protein Regions of Viruses: Roles in Viral Life Cycle and Control of Virus–Host Interactions". International Journal of Molecular Sciences 21, nr 23 (28.11.2020): 9045. http://dx.doi.org/10.3390/ijms21239045.
Pełny tekst źródłaVovk, Andrei, i Anton Zilman. "Effects of Sequence Composition, Patterning and Hydrodynamics on the Conformation and Dynamics of Intrinsically Disordered Proteins". International Journal of Molecular Sciences 24, nr 2 (11.01.2023): 1444. http://dx.doi.org/10.3390/ijms24021444.
Pełny tekst źródłaFujiwara, Satoru. "Dynamical Behavior of Disordered Regions in Disease-Related Proteins Revealed by Quasielastic Neutron Scattering". Medicina 58, nr 6 (13.06.2022): 795. http://dx.doi.org/10.3390/medicina58060795.
Pełny tekst źródłaChiang, Wan-Chin, Ming-Hsuan Lee, Tsai-Chen Chen i Jie-rong Huang. "Interactions between the Intrinsically Disordered Regions of hnRNP-A2 and TDP-43 Accelerate TDP-43′s Conformational Transition". International Journal of Molecular Sciences 21, nr 16 (18.08.2020): 5930. http://dx.doi.org/10.3390/ijms21165930.
Pełny tekst źródłaPintado-Grima, Carlos, Oriol Bárcenas i Salvador Ventura. "In-Silico Analysis of pH-Dependent Liquid-Liquid Phase Separation in Intrinsically Disordered Proteins". Biomolecules 12, nr 7 (12.07.2022): 974. http://dx.doi.org/10.3390/biom12070974.
Pełny tekst źródłaWatson, Matthew, i Katherine Stott. "Disordered domains in chromatin-binding proteins". Essays in Biochemistry 63, nr 1 (kwiecień 2019): 147–56. http://dx.doi.org/10.1042/ebc20180068.
Pełny tekst źródłaBianchi, Greta, Sonia Longhi, Rita Grandori i Stefania Brocca. "Relevance of Electrostatic Charges in Compactness, Aggregation, and Phase Separation of Intrinsically Disordered Proteins". International Journal of Molecular Sciences 21, nr 17 (27.08.2020): 6208. http://dx.doi.org/10.3390/ijms21176208.
Pełny tekst źródłaAvramov, Miloš, Éva Schád, Ágnes Révész, Lilla Turiák, Iva Uzelac, Ágnes Tantos, László Drahos i Željko D. Popović. "Identification of Intrinsically Disordered Proteins and Regions in a Non-Model Insect Species Ostrinia nubilalis (Hbn.)". Biomolecules 12, nr 4 (18.04.2022): 592. http://dx.doi.org/10.3390/biom12040592.
Pełny tekst źródłaPang, Yihe, i Bin Liu. "IDP-LM: Prediction of protein intrinsic disorder and disorder functions based on language models". PLOS Computational Biology 19, nr 11 (22.11.2023): e1011657. http://dx.doi.org/10.1371/journal.pcbi.1011657.
Pełny tekst źródłaGrahl, Matheus V. Coste, Fernanda Cortez Lopes, Anne H. Souza Martinelli, Celia R. Carlini i Leonardo L. Fruttero. "Structure-Function Insights of Jaburetox and Soyuretox: Novel Intrinsically Disordered Polypeptides Derived from Plant Ureases". Molecules 25, nr 22 (16.11.2020): 5338. http://dx.doi.org/10.3390/molecules25225338.
Pełny tekst źródłaDavey, Norman E., M. Madan Babu, Martin Blackledge, Alan Bridge, Salvador Capella-Gutierrez, Zsuzsanna Dosztanyi, Rachel Drysdale i in. "An intrinsically disordered proteins community for ELIXIR". F1000Research 8 (15.10.2019): 1753. http://dx.doi.org/10.12688/f1000research.20136.1.
Pełny tekst źródłaSammak, Susan, i Giovanna Zinzalla. "Targeting protein–protein interactions (PPIs) of transcription factors: Challenges of intrinsically disordered proteins (IDPs) and regions (IDRs)". Progress in Biophysics and Molecular Biology 119, nr 1 (październik 2015): 41–46. http://dx.doi.org/10.1016/j.pbiomolbio.2015.06.004.
Pełny tekst źródłaErdős, Gábor, Mátyás Pajkos i Zsuzsanna Dosztányi. "IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation". Nucleic Acids Research 49, W1 (28.05.2021): W297—W303. http://dx.doi.org/10.1093/nar/gkab408.
Pełny tekst źródłaSun, Xiaolin, William T. Jones i Erik H. A. Rikkerink. "GRAS proteins: the versatile roles of intrinsically disordered proteins in plant signalling". Biochemical Journal 442, nr 1 (27.01.2012): 1–12. http://dx.doi.org/10.1042/bj20111766.
Pełny tekst źródłaRoterman, Irena, Katarzyna Stapor, Piotr Fabian i Leszek Konieczny. "New insights into disordered proteins and regions according to the FOD-M model". PLOS ONE 17, nr 10 (10.10.2022): e0275300. http://dx.doi.org/10.1371/journal.pone.0275300.
Pełny tekst źródłaWilson, Carter J., Wing-Yiu Choy i Mikko Karttunen. "AlphaFold2: A Role for Disordered Protein/Region Prediction?" International Journal of Molecular Sciences 23, nr 9 (21.04.2022): 4591. http://dx.doi.org/10.3390/ijms23094591.
Pełny tekst źródłaFrench-Pacheco, Leidys, Omar Rosas-Bringas, Lorenzo Segovia i Alejandra A. Covarrubias. "Intrinsically disordered signaling proteins: Essential hub players in the control of stress responses in Saccharomyces cerevisiae". PLOS ONE 17, nr 3 (15.03.2022): e0265422. http://dx.doi.org/10.1371/journal.pone.0265422.
Pełny tekst źródłaLiu, Yumeng, Xiaolong Wang i Bin Liu. "IDP–CRF: Intrinsically Disordered Protein/Region Identification Based on Conditional Random Fields". International Journal of Molecular Sciences 19, nr 9 (22.08.2018): 2483. http://dx.doi.org/10.3390/ijms19092483.
Pełny tekst źródłaChu, Wen-Ting, i Jin Wang. "Thermodynamic and sequential characteristics of phase separation and droplet formation for an intrinsically disordered region/protein ensemble". PLOS Computational Biology 17, nr 3 (8.03.2021): e1008672. http://dx.doi.org/10.1371/journal.pcbi.1008672.
Pełny tekst źródłaBianchi, Greta, Stefania Brocca, Sonia Longhi i Vladimir N. Uversky. "Liaisons dangereuses: Intrinsic Disorder in Cellular Proteins Recruited to Viral Infection-Related Biocondensates". International Journal of Molecular Sciences 24, nr 3 (21.01.2023): 2151. http://dx.doi.org/10.3390/ijms24032151.
Pełny tekst źródłaBeveridge, Rebecca, i Antonio N. Calabrese. "Structural Proteomics Methods to Interrogate the Conformations and Dynamics of Intrinsically Disordered Proteins". Frontiers in Chemistry 9 (11.03.2021). http://dx.doi.org/10.3389/fchem.2021.603639.
Pełny tekst źródłaQuaglia, Federica, Anastasia Chasapi, Maria Victoria Nugnes, Maria Cristina Aspromonte, Emanuela Leonardi, Damiano Piovesan i Silvio C. E. Tosatto. "Best practices for the manual curation of intrinsically disordered proteins in DisProt". Database 2024 (1.01.2024). http://dx.doi.org/10.1093/database/baae009.
Pełny tekst źródłaBondos, Sarah E., A. Keith Dunker i Vladimir N. Uversky. "On the roles of intrinsically disordered proteins and regions in cell communication and signaling". Cell Communication and Signaling 19, nr 1 (30.08.2021). http://dx.doi.org/10.1186/s12964-021-00774-3.
Pełny tekst źródłaLiu, Yumeng, Xiaolong Wang i Bin Liu. "RFPR-IDP: reduce the false positive rates for intrinsically disordered protein and region prediction by incorporating both fully ordered proteins and disordered proteins". Briefings in Bioinformatics, 28.02.2020. http://dx.doi.org/10.1093/bib/bbaa018.
Pełny tekst źródłaHowton, T. C., Yingqian Ada Zhan, Yali Sun i M. Shahid Mukhtar. "Intrinsically disordered proteins: controlled chaos or random walk". International Journal of Plant Biology 6, nr 1 (9.02.2016). http://dx.doi.org/10.4081/pb.2015.6191.
Pełny tekst źródłaIserte, Javier A., Tamas Lazar, Silvio C. E. Tosatto, Peter Tompa i Cristina Marino-Buslje. "Chasing coevolutionary signals in intrinsically disordered proteins complexes". Scientific Reports 10, nr 1 (21.10.2020). http://dx.doi.org/10.1038/s41598-020-74791-6.
Pełny tekst źródłaSigrist, Stephan J., i Volker Haucke. "Orchestrating vesicular and nonvesicular membrane dynamics by intrinsically disordered proteins". EMBO reports, 8.09.2023. http://dx.doi.org/10.15252/embr.202357758.
Pełny tekst źródłaRoterman, Irena, Katarzyna Stapor i Leszek Konieczny. "Engagement of intrinsic disordered proteins in protein–protein interaction". Frontiers in Molecular Biosciences 10 (31.07.2023). http://dx.doi.org/10.3389/fmolb.2023.1230922.
Pełny tekst źródłaZhang, Zhengjian, Zarko Boskovic, Mahmud M. Hussain, Wenxin Hu, Carla Inouye, Han-Je Kim, A. Katherine Abole i in. "Chemical perturbation of an intrinsically disordered region of TFIID distinguishes two modes of transcription initiation". eLife 4 (28.08.2015). http://dx.doi.org/10.7554/elife.07777.
Pełny tekst źródłaPang, Yihe, i Bin Liu. "DisoFLAG: accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model". BMC Biology 22, nr 1 (2.01.2024). http://dx.doi.org/10.1186/s12915-023-01803-y.
Pełny tekst źródłaCubuk, Jasmine, Melissa D. Stuchell-Brereton i Andrea Soranno. "The biophysics of disordered proteins from the point of view of single-molecule fluorescence spectroscopy". Essays in Biochemistry, 23.11.2022. http://dx.doi.org/10.1042/ebc20220065.
Pełny tekst źródłaGandass, Nishu, Kajal i Prafull Salvi. "Intrinsically disordered protein, DNA binding with one finger transcription factor (OsDOF27) implicates thermotolerance in yeast and rice". Frontiers in Plant Science 13 (29.07.2022). http://dx.doi.org/10.3389/fpls.2022.956299.
Pełny tekst źródłaChen, Serena H., Kevin L. Weiss, Christopher Stanley i Debsindhu Bhowmik. "Structural characterization of an intrinsically disordered protein complex using integrated small‐angle neutron scattering and computing". Protein Science, 30.08.2023. http://dx.doi.org/10.1002/pro.4772.
Pełny tekst źródłaAvni, Anamika, Ashish Joshi, Anuja Walimbe, Swastik G. Pattanashetty i Samrat Mukhopadhyay. "Single-droplet surface-enhanced Raman scattering decodes the molecular determinants of liquid-liquid phase separation". Nature Communications 13, nr 1 (28.07.2022). http://dx.doi.org/10.1038/s41467-022-32143-0.
Pełny tekst źródłaDi Ianni, Alessio, Christian Tüting, Marc Kipping, Christian H. Ihling, Janett Köppen, Claudio Iacobucci, Christian Arlt, Panagiotis L. Kastritis i Andrea Sinz. "Structural assessment of the full-length wild-type tumor suppressor protein p53 by mass spectrometry-guided computational modeling". Scientific Reports 13, nr 1 (25.05.2023). http://dx.doi.org/10.1038/s41598-023-35437-5.
Pełny tekst źródłaChow, Vimanda, Esther Wolf, Cristina Lento i Derek J. Wilson. "Developments in rapid hydrogen–deuterium exchange methods". Essays in Biochemistry, 13.01.2023. http://dx.doi.org/10.1042/ebc20220174.
Pełny tekst źródłaShafat, Zoya, Anwar Ahmed, Mohammad K. Parvez i Shama Parveen. "Intrinsic disorder in the open reading frame 2 of hepatitis E virus: a protein with multiple functions beyond viral capsid". Journal of Genetic Engineering and Biotechnology 21, nr 1 (16.03.2023). http://dx.doi.org/10.1186/s43141-023-00477-x.
Pełny tekst źródłaLiu, Zi Hao, João M. C. Teixeira, Oufan Zhang, Thomas E. Tsangaris, Jie Li, Claudiu C. Gradinaru, Teresa Head-Gordon i Julie D. Forman-Kay. "Local Disordered Region Sampling (LDRS) for Ensemble Modeling of Proteins with Experimentally Undetermined or Low Confidence Prediction Segments". Bioinformatics, 7.12.2023. http://dx.doi.org/10.1093/bioinformatics/btad739.
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