Rozprawy doktorskie na temat „Dryland rivers”

Arid and semiarid river systems in Western Queensland, Australia, are characterized by the unpredictable and highly variable nature of their hydrological regimes as a result of the episodic nature of rain events in the region. These dryland rivers typically experience episodic floods and extremely low or no flow periods. During low or no flow periods, water persists only in relatively wide and deep sections of the river channels, which are called 'waterholes'. These isolated waterholes serve as refugia for aquatic species during protracted intervals between floods. In such discontinuous riverine habitat, dispersal of freshwater species may be achieved only during wet seasons, when water is flowing in rivers and the nearby floodplains. Obligate aquatic species occur in habitats that represent discrete sites surrounded by inhospitable terrestrial landscapes. Thus, movements are very much limited by the physical nature and arrangement of the riverine system. In addition, the distribution of a species may be also largely dependent on historical events. Landscape and river courses continually change over geological time, often leaving distinct phylogenetic 'signatures', useful in reconciling species' biology with population connectivity and earth history. The main aim of this study was to resolve the relative importance of contemporary and historical processes in structuring populations of two freshwater species in Western Queensland river systems. To address this aim, a comparative approach was taken in analysing patterns of genetic variation of two freshwater invertebrates: a snail (Notopala sublineata) and a prawn (Macrobrachium australiense). Mitochondrial sequences were used for both the species. In addition, allozyme and microsatellites markers were employed for N. sublineata. These species have similar distributions in Western Queensland region, although N. sublineata appears to be extinct in some catchments. M. australiense is thought to have good dispersal abilities due to a planktonic larval phase in its life cycle and good swimming capabilities, whereas N. sublineata is thought to have limited dispersal abilities, because of its benthic behaviour and because this species is viviparous. It was hypothesised that these freshwater invertebrates, would display high levels of genetic structure in populations, because physical barriers represented by terrestrial inhospitable habitat, are likely to impede gene flow between populations inhabiting isolated river pools. Genetic data for the two species targeted in this study supported this hypothesis, indicating strong population subdivision at all spatial scales investigated (i.e. between and within catchments). This suggests that contemporary dispersal between isolated waterholes is relatively restricted, despite the potential good dispersal abilities of one of the species. It was hypothesised that levels of gene flow between populations of aquatic species were higher during the Quaternary (likely movements of individuals across catchment boundaries) and that they have been isolated relatively recently. There is evidence that historically gene flow was occurring between populations, suggesting that episodic dispersal across catchment boundaries was likelier in the past. Episodic historical movements of aquatic fauna were facilitated by higher patterns of river connectivity as a result of the climate changes of the Pleistocene. Because the two species targeted in this study exhibit analogous spatial patterns of evolutionary subdivision it is likely that they have a shared biogeographic history. The unpredictable flow regime of rivers in Western Queensland is likely to have considerable effects on the genetic diversity of aquatic populations. First, if populations of obligate freshwater organisms inhabiting less persistent waterholes are more likely to experience periodic bottlenecks than those inhabiting more persistent ones, they would be expected to have lower levels of genetic diversity. Second, if populations inhabiting less persistent waterholes periodically undergo local extinction with subsequent recolonisation, there should be higher levels of genetic differentiation among them, due to the founder effects, than among those populations inhabiting more persistent waterholes. Contrary to the first prediction, the observed levels of genetic diversity in both N. sublineata and M. australiense were high in both more persistent and less persistent waterholes. There was no tendency for genetic diversity to be lower in less persistent than in more persistent waterholes. However, when Cooper waterholes were ranked in order of persistence, positive correlation between water persistence time in waterholes and genetic diversity was detected in N. sublineata but not in M. australiense. Contrary to the second prediction, highly significant genetic differentiation was found among populations from both less persistent and more persistent waterholes. This indicates that not only populations from less persistent but also those from more persistent waterholes were very dissimilar genetically. This study demonstrated the importance of both contemporary and historical processes in shaping the population structure of obligate freshwater species in Western Queensland river systems. It has indicated that contemporary movements of freshwater species generally are extremely limited across the region, whereas episodic dispersal across catchment boundaries was possible during the Pleistocene, due to different patterns of river connectivity.

Arid and semiarid river systems in Western Queensland, Australia, are characterized by the unpredictable and highly variable nature of their hydrological regimes as a result of the episodic nature of rain events in the region. These dryland rivers typically experience episodic floods and extremely low or no flow periods. During low or no flow periods, water persists only in relatively wide and deep sections of the river channels, which are called 'waterholes'. These isolated waterholes serve as refugia for aquatic species during protracted intervals between floods. In such discontinuous riverine habitat, dispersal of freshwater species may be achieved only during wet seasons, when water is flowing in rivers and the nearby floodplains. Obligate aquatic species occur in habitats that represent discrete sites surrounded by inhospitable terrestrial landscapes. Thus, movements are very much limited by the physical nature and arrangement of the riverine system. In addition, the distribution of a species may be also largely dependent on historical events. Landscape and river courses continually change over geological time, often leaving distinct phylogenetic 'signatures', useful in reconciling species' biology with population connectivity and earth history. The main aim of this study was to resolve the relative importance of contemporary and historical processes in structuring populations of two freshwater species in Western Queensland river systems. To address this aim, a comparative approach was taken in analysing patterns of genetic variation of two freshwater invertebrates: a snail (Notopala sublineata) and a prawn (Macrobrachium australiense). Mitochondrial sequences were used for both the species. In addition, allozyme and microsatellites markers were employed for N. sublineata. These species have similar distributions in Western Queensland region, although N. sublineata appears to be extinct in some catchments. M. australiense is thought to have good dispersal abilities due to a planktonic larval phase in its life cycle and good swimming capabilities, whereas N. sublineata is thought to have limited dispersal abilities, because of its benthic behaviour and because this species is viviparous. It was hypothesised that these freshwater invertebrates, would display high levels of genetic structure in populations, because physical barriers represented by terrestrial inhospitable habitat, are likely to impede gene flow between populations inhabiting isolated river pools. Genetic data for the two species targeted in this study supported this hypothesis, indicating strong population subdivision at all spatial scales investigated (i.e. between and within catchments). This suggests that contemporary dispersal between isolated waterholes is relatively restricted, despite the potential good dispersal abilities of one of the species. It was hypothesised that levels of gene flow between populations of aquatic species were higher during the Quaternary (likely movements of individuals across catchment boundaries) and that they have been isolated relatively recently. There is evidence that historically gene flow was occurring between populations, suggesting that episodic dispersal across catchment boundaries was likelier in the past. Episodic historical movements of aquatic fauna were facilitated by higher patterns of river connectivity as a result of the climate changes of the Pleistocene. Because the two species targeted in this study exhibit analogous spatial patterns of evolutionary subdivision it is likely that they have a shared biogeographic history. The unpredictable flow regime of rivers in Western Queensland is likely to have considerable effects on the genetic diversity of aquatic populations. First, if populations of obligate freshwater organisms inhabiting less persistent waterholes are more likely to experience periodic bottlenecks than those inhabiting more persistent ones, they would be expected to have lower levels of genetic diversity. Second, if populations inhabiting less persistent waterholes periodically undergo local extinction with subsequent recolonisation, there should be higher levels of genetic differentiation among them, due to the founder effects, than among those populations inhabiting more persistent waterholes. Contrary to the first prediction, the observed levels of genetic diversity in both N. sublineata and M. australiense were high in both more persistent and less persistent waterholes. There was no tendency for genetic diversity to be lower in less persistent than in more persistent waterholes. However, when Cooper waterholes were ranked in order of persistence, positive correlation between water persistence time in waterholes and genetic diversity was detected in N. sublineata but not in M. australiense. Contrary to the second prediction, highly significant genetic differentiation was found among populations from both less persistent and more persistent waterholes. This indicates that not only populations from less persistent but also those from more persistent waterholes were very dissimilar genetically. This study demonstrated the importance of both contemporary and historical processes in shaping the population structure of obligate freshwater species in Western Queensland river systems. It has indicated that contemporary movements of freshwater species generally are extremely limited across the region, whereas episodic dispersal across catchment boundaries was possible during the Pleistocene, due to different patterns of river connectivity.
Thesis (PhD Doctorate)
Doctor of Philosophy (PhD)
Australian School of Environmental Studies
Full Text

Australia’s largest and most important waterway- the Murray-Darling Basin (MDB) - is under threat owing to predicted increases in temperature extremes and reduction in rainfall - runoff in the coming decades. Management strategies are required that incorporate an understanding of dispersal patterns of the MDB fauna and flora. Patterns of dispersal have typically been studied through direct organismal studies but genetic approaches, in which the movement of genes in the landscape is used as a correlate of species dispersal, can provide a more comprehensive view by investigating at a much larger temporal and spatial scale. Genetic connectivity (dispersal) is influenced by the biology of the species, and by flow regime and the dendritic pattern of the network in riverine landscapes. An understanding of the relative influence of each on connectivity is required to deliver informed management strategies. Decisions regarding whether management for conservation is necessary also require an understanding of a species susceptibility to a changing environment. Species already exhibiting deleterious trajectories under current flow regimes in the basin may require more drastic measures than those that have remained unaffected.
Thesis (PhD Doctorate)
Doctor of Philosophy (PhD)
Griffith School of Environment
Science, Environment, Engineering and Technology
Full Text

One of the major problems for the implementation of water resources planning and management in arid and semi-arid environments is the scarcity of hydrological data and, consequently, research studies. In this thesis, the hydrology of dryland river systems was analyzed and a semi-distributed hydrological model and a forecasting approach were developed for flow transmission processes in river-systems with a focus on semi-arid conditions. Three different sources of hydrological data (streamflow series, groundwater level series and multi-temporal satellite data) were combined in order to analyze the channel transmission losses of a large reach of the Jaguaribe River in NE Brazil. A perceptual model of this reach was derived suggesting that the application of models, which were developed for sub-humid and temperate regions, may be more suitable for this reach than classical models, which were developed for arid and semi-arid regions. Summarily, it was shown that this river reach is hydraulically connected with groundwater and shifts from being a losing river at the dry and beginning of rainy seasons to become a losing/gaining (mostly losing) river at the middle and end of rainy seasons. A new semi-distributed channel transmission losses model was developed, which was based primarily on the capability of simulation in very different dryland environments and flexible model structures for testing hypotheses on the dominant hydrological processes of rivers. This model was successfully tested in a large reach of the Jaguaribe River in NE Brazil and a small stream in the Walnut Gulch Experimental Watershed in the SW USA. Hypotheses on the dominant processes of the channel transmission losses (different model structures) in the Jaguaribe river were evaluated, showing that both lateral (stream-)aquifer water fluxes and ground-water flow in the underlying alluvium parallel to the river course are necessary to predict streamflow and channel transmission losses, the former process being more relevant than the latter. This procedure not only reduced model structure uncertainties, but also reported modelling failures rejecting model structure hypotheses, namely streamflow without river-aquifer interaction and stream-aquifer flow without groundwater flow parallel to the river course. The application of the model to different dryland environments enabled learning about the model itself from differences in channel reach responses. For example, the parameters related to the unsaturated part of the model, which were active for the small reach in the USA, presented a much greater variation in the sensitivity coefficients than those which drove the saturated part of the model, which were active for the large reach in Brazil. Moreover, a nonparametric approach, which dealt with both deterministic evolution and inherent fluctuations in river discharge data, was developed based on a qualitative dynamical system-based criterion, which involved a learning process about the structure of the time series, instead of a fitting procedure only. This approach, which was based only on the discharge time series itself, was applied to a headwater catchment in Germany, in which runoff are induced by either convective rainfall during the summer or snow melt in the spring. The application showed the following important features: • the differences between runoff measurements were more suitable than the actual runoff measurements when using regression models; • the catchment runoff system shifted from being a possible dynamical system contaminated with noise to a linear random process when the interval time of the discharge time series increased; • and runoff underestimation can be expected for rising limbs and overestimation for falling limbs. This nonparametric approach was compared with a distributed hydrological model designed for real-time flood forecasting, with both presenting similar results on average. Finally, a benchmark for hydrological research using semi-distributed modelling was proposed, based on the aforementioned analysis, modelling and forecasting of flow transmission processes. The aim of this benchmark was not to describe a blue-print for hydrological modelling design, but rather to propose a scientific method to improve hydrological knowledge using semi-distributed hydrological modelling. Following the application of the proposed benchmark to a case study, the actual state of its hydrological knowledge and its predictive uncertainty can be determined, primarily through rejected hypotheses on the dominant hydrological processes and differences in catchment/variables responses.
Die Bewirtschaftung von Wasserressourcen in ariden und semiariden Landschaften ist mit einer Reihe besonderer Probleme konfrontiert. Eines der größten Probleme für die Maßnahmenplanung und für das operationelle Management ist der Mangel an hydrologischen Daten und damit zusammenhängend auch die relativ kleine Zahl wissenschaftlicher Arbeiten zu dieser Thematik. In dieser Arbeit wurden 1) die grundlegenden hydrologischen Bedingungen von Trockenflusssystemen analysiert, 2) ein Modellsystem für Flüsse unter semiariden Bedingungen, und 3) ein nichtparametrisches Vorhersage-verfahren für Abflussvorgänge in Flüssen entwickelt. Der Wasserverlust in einem großen Abschnitt des Jaguaribe Flusses im nordöstlichen Brasilien wurde auf Basis von Daten zu Abflussraten, Grundwasserflurabstände und mit Hilfe multitemporaler Satellitendaten analysiert. Dafür wurde zuerst ein konzeptionelles hydrologisches Modell über die Mechanismen der Transferverluste in diesem Abschnitt des Trockenflusses erstellt. Dabei ergab sich, dass der Flussabschnitt mit dem Grundwasser hydraulisch verbunden ist. Der Flussabschnitt weist in der Trockenenzeit und am Anfang der Regenzeit nur Wasserverlust (Sickerung) zum Grundwasser auf. Im Laufe der Regenzeit findet auch ein gegenseitiger Austausch vom Grundwasser mit dem Flusswasser statt. Aufgrund dieser hydraulischen Kopplung zwischen Flusswasser und Grundwasser sind für diesen Flussabschnitt hydrologische Modellansätze anzuwenden, die generell für gekoppelte Fluss-Grundwassersysteme, v.a. in feuchtgemäßigten Klimaten, entwickelt wurden. Es wurde ein neuartiges hydrologisches Simulationsmodell für Transferverluste in Trockenflüssen entwickelt. Dieses Modell ist für unterschiedliche aride und semiaride Landschaften anwendbar und hat eine flexible Modellstruktur, wodurch unterschiedliche Hypothesen zur Relevanz einzelner hydrologische Prozesse getestet werden können. Es wurde für den zuvor genannten großen Abschnitt des Jaguaribe Flusses im nordöstlichen Brasilien und für einen kleinen Flussabschnitt im „Walnut Gulch Experimental Watershed“ (WGEW) in Arizona, Südwest-USA, angewendet. Für die eine prozess-orientierte Simulation von Abflussbedingungen und Transferverlusten im Einzugsgebiet des Jaguaribe hat sich gezeigt, dass die am besten geeignete Modellstruktur sowohl den Austausch zwischen Flusswasser und Grundwasser (senkrecht zur Fließrichtung des Flusses) als auch die parallel zum Fluss verlaufende Grundwasserströmung enthält. Die Simulationsexperimente mit unterschiedlichen Modellstrukturen („Hypothesentest“) reduzierte nicht nur die Modellstrukturunsicherheit, sondern quantifizierte auch die Qualität der Modellergebnisse bei folgenden Varianten der Modellstruktur: a) Abflluss im Fluss ohne Interaktion mit dem Grundwasser (keine Transferverluste) und b) Interaktion zwischen Fluss und Grundwasser ohne parallelen Grundwasserstrom zum Flussstrom. Durch die Anwendung auf die beiden unterschiedlichen Trockenflusssysteme wurden neue Erkenntnisse über die Sensitivität des Modells unter verschiedenen Bedingungen erworben. Beispielsweise waren die Parameter der ungesättigten Zone, die von hoher Relevanz für den kleinen Flussabschnitt im WGEW waren, viel sensitiver als die Parameter der gesättigten Zone, die besonders relevant für den Jaguaribe Flussabschnitt in Brasilien waren. Die Ursache für diese sehr unterschiedliche Sensitivität liegt darin, dass beim WGEW das Flusswasser nur mit der ungesättigten Zone in Kontakt steht, da sich in diesem Gebiet, welche im Vergleich zur Jaguaribe-Region noch deutlich trockener ist, kein Grund-wasserleiter bildet. Letztlich wurde ein nicht-parametrisches Verfahren, zur Simulation der deterministischen Evolution und stochastischen Fluktuation der Abflussdynamik entwickelt. Im Unterschied zu prozessbasiertem Modellsystemen basiert dieses Verfahren nicht auf Modellkalibrierung sondern auf einem Lernprozess, basierend auf Zeitreihendaten. Als Anwendungsbeispiel wurde ein mesoskaliges Einzugsgebiet im Erzgebirge, NO-Deutschland gewählt, in dem starke Abflussereignisse entweder durch konvektive Niederschlagsereignisse oder durch Schneeschmelze generiert werden. Die folgenden wichtigsten Ergebnisse wurden erzielt: • Regressionsmodellansätze basierend auf den zeitlichen Änderungen der Abflüsse liefern bessere Ergebnisse gegenüber Ansätzen basierend auf direkten Abflussdaten; • mit zunehmendem Vorhersagehorizont wandelt sich das hydrologische System von einem mit Zufallsanteilen verrauschten dynamischen System zu einem linearen probabilistischen Zufallsprozess; • Bei zunehmendem Abfluss (ansteigenden Ganglinie) erfolgt meist eine Abflussunterschätzung, bei abnehmendem Abfluss (fallende Ganglinie) erfolgt meist eine Abflussüberschätzung. Dieses nichtparametrische Verfahren ergibt im Vergleich mit einem prozess-orientierten und flächenverteilten hydrologischen Hochwasservorhersagemodell bis zu einem Vorhersagezeitraum von 3 Stunden Ergebnisse von vergleichbar guter Qualität. Letztendlich wurde ein Vorgehen bzgl. künftiger Forschungen zu hydrologischer Modellierung vorgeschlagen. Das Ziel dabei war ein wissenschaftliches Verfahren zur Verbesserung des hydrologischen Wissens über ein Einzugsgebiet. Diese Verfahren basiert auf einem Hypothesentest zu den relevanten hydrologischen Prozessen und der Untersuchung der Sensitivitäten der hydrologischen Variablen bei unterschiedlichen Einzugsgebieten.

Throughout arid and semi-arid inland Australia, many extensive floodplains occur in association with rivers which are amongst the most hydrologically variable in the world. As rainfall in these areas is characteristically low and patchy, conditions in Australia's 'dryland' floodplains fluctuate unpredictably between extended periods of drought and huge floods that transform vast areas into wetlands, often for months at a time. Vegetation in these floodplains is commonly dominated by short grass and forb associations and patches of open succulent shrubland which are attributed with high ecological and socio-economic values due to their provision of habitat to a diverse array of terrestrial and aquatic fauna and their productive native pasture growth. In temperate and tropical floodplains, a substantial number of studies have shown that plant community composition and structure is determined primarily by flow and alterations to flow in these areas, through water extraction or river regulation, have resulted in many changes to the vegetation including loss of biodiversity and mass invasions of exotic species. Despite increasing pressure for water resource development in 'dryland' regions, relatively little is known regarding the effects of highly variable flows on the vegetation dynamics of arid floodplains, particularly in Australia. This thesis addresses this knowledge gap by examining the role of flow in the vegetation dynamics of a large arid floodplain in central Australia: the Cooper Creek floodplain. The effects of flow on plant community dynamics, from an organism level to that of the landscape, are examined across a range of spatial and temporal scales. Results are presented from a two year temporal vegetation survey during which time two flood pulse events of differing sizes occurred. A large-scale spatial survey was also conducted to determine the effects of flood history on spatial variation in plant community composition and structure. The composition of the soil seed bank and its contribution to vegetation dynamics were additionally investigated through a series of germination trials. Amongst common arid floodplain plants, life history traits that enable persistence under variable hydrological conditions were also considered via several experiments aimed at determining the effects of flow on the outcomes of various life history stages including germination, growth and dispersal. Throughout the study, results are presented for plant groups that were predefined on the basis of life form, life span and taxonomic divisions within these categories. Plant community composition and structure in the Cooper Creek floodplain exhibits significant shifts both temporally, in response to flood pulse wetting and drying, and spatially, in response to flood history. Flood pulse inundation has the potential to influence each life history stage across the range of plant groups present and the outcomes of these appear to be determined by hydrological attributes such as flood pulse timing, duration and rate of drawdown. Vegetation consequently exhibits gradual zonation on a gradient of flood frequency along which plant groups occur at predictable locations depending on their life history traits and recent hydrological conditions. A substantial proportion of species display ruderal life history traits including large, persistent soil seed banks and rapid life cycles which enable escape in time from the stresses associated with flooding and drought. These species, mostly comprising annual monocots and forbs, are widespread throughout the landscape and their presence in the extant vegetation is related primarily to the time since the last flood pulse event and the hydrological attributes of this. Perennial species, particularly shrubs, do not appear to rely similarly on the soil seed bank for recruitment and their distribution in the floodplain vegetation is likely to be determined more by their ability to tolerate either flooding or drought. Overall, this study demonstrates that flow, despite its variability, has an overriding influence on vegetation dynamics in the arid floodplain of the Cooper Creek. The spatial and temporal variability of flow maintains a heterogeneous mosaic of plant communities of differing composition and structure. Given this close relationship between flow and vegetation dynamics, anthropogenic alterations to flow are likely to result in changes to the vegetation including homogenisation of plant communities across the floodplain landscape and eventual loss of biodiversity.

Throughout arid and semi-arid inland Australia, many extensive floodplains occur in association with rivers which are amongst the most hydrologically variable in the world. As rainfall in these areas is characteristically low and patchy, conditions in Australia's 'dryland' floodplains fluctuate unpredictably between extended periods of drought and huge floods that transform vast areas into wetlands, often for months at a time. Vegetation in these floodplains is commonly dominated by short grass and forb associations and patches of open succulent shrubland which are attributed with high ecological and socio-economic values due to their provision of habitat to a diverse array of terrestrial and aquatic fauna and their productive native pasture growth. In temperate and tropical floodplains, a substantial number of studies have shown that plant community composition and structure is determined primarily by flow and alterations to flow in these areas, through water extraction or river regulation, have resulted in many changes to the vegetation including loss of biodiversity and mass invasions of exotic species. Despite increasing pressure for water resource development in 'dryland' regions, relatively little is known regarding the effects of highly variable flows on the vegetation dynamics of arid floodplains, particularly in Australia. This thesis addresses this knowledge gap by examining the role of flow in the vegetation dynamics of a large arid floodplain in central Australia: the Cooper Creek floodplain. The effects of flow on plant community dynamics, from an organism level to that of the landscape, are examined across a range of spatial and temporal scales. Results are presented from a two year temporal vegetation survey during which time two flood pulse events of differing sizes occurred. A large-scale spatial survey was also conducted to determine the effects of flood history on spatial variation in plant community composition and structure. The composition of the soil seed bank and its contribution to vegetation dynamics were additionally investigated through a series of germination trials. Amongst common arid floodplain plants, life history traits that enable persistence under variable hydrological conditions were also considered via several experiments aimed at determining the effects of flow on the outcomes of various life history stages including germination, growth and dispersal. Throughout the study, results are presented for plant groups that were predefined on the basis of life form, life span and taxonomic divisions within these categories. Plant community composition and structure in the Cooper Creek floodplain exhibits significant shifts both temporally, in response to flood pulse wetting and drying, and spatially, in response to flood history. Flood pulse inundation has the potential to influence each life history stage across the range of plant groups present and the outcomes of these appear to be determined by hydrological attributes such as flood pulse timing, duration and rate of drawdown. Vegetation consequently exhibits gradual zonation on a gradient of flood frequency along which plant groups occur at predictable locations depending on their life history traits and recent hydrological conditions. A substantial proportion of species display ruderal life history traits including large, persistent soil seed banks and rapid life cycles which enable escape in time from the stresses associated with flooding and drought. These species, mostly comprising annual monocots and forbs, are widespread throughout the landscape and their presence in the extant vegetation is related primarily to the time since the last flood pulse event and the hydrological attributes of this. Perennial species, particularly shrubs, do not appear to rely similarly on the soil seed bank for recruitment and their distribution in the floodplain vegetation is likely to be determined more by their ability to tolerate either flooding or drought. Overall, this study demonstrates that flow, despite its variability, has an overriding influence on vegetation dynamics in the arid floodplain of the Cooper Creek. The spatial and temporal variability of flow maintains a heterogeneous mosaic of plant communities of differing composition and structure. Given this close relationship between flow and vegetation dynamics, anthropogenic alterations to flow are likely to result in changes to the vegetation including homogenisation of plant communities across the floodplain landscape and eventual loss of biodiversity.
Thesis (PhD Doctorate)
Doctor of Philosophy (PhD)
Australian School of Environmental Studies
Full Text

The savannas of southern Africa are a highly variable and globally-important biome supporting rapidly-expanding human populations, along with one of the greatest concentrations of wildlife on the continent. Savannas occupy a fifth of the earth's land surface, yet despite their ecological and economic significance, understanding of the complex couplings and feedbacks that drive spatiotemporal patterns of change are lacking. In Chapter 1 of my dissertation, I discuss some of the different theoretical frameworks used to understand complex and dynamic changes in savanna structure and composition. In Chapter 2, I evaluate spatial drivers of water quality declines in the Chobe River using spatiotemporal and geostatistical modeling of time series data collected along a transect spanning a mosaic of protected, urban, and developing urban land use. Chapter 3 explores the complex couplings and feedbacks that drive spatiotemporal patterns of land cover (LC) change across the Chobe District, with a particular focus on climate, fire, herbivory, and anthropogenic disturbance. In Chapter 4, I evaluated the utility of Distance sampling methods to: 1) derive seasonal fecal loading estimates in national park and unprotected land; 2) provide a simple, standardized method to estimate riparian fecal loading for use in distributed hydrological water quality models; 3) answer questions about complex drivers and patterns of water quality variability in a semi-arid southern African river system. Together, these findings have important implications to land use planning and water conservation in southern Africa's dryland savanna ecosystems.
Ph. D.

[Truncated abstract] In an era of emerging and resurging infectious diseases, understanding the ecological processes that influence pathogen activity and the influences of anthropogenic change to those are critical. Ross River virus (RRV, Togoviridae: Alphavirus) is a mosquito-borne zoonosis occurring in Australia with a significant human disease burden. In the southwest of Western Australia (WA) RRV is principally vectored by Aedes camptorhynchus Thomson (Diptera: Culicidae), which is halophilic. The inland southwest, the Wheatbelt region, of WA is substantially affected by an anthropogenic salinisation of agricultural land called dryland salinity, which threatens to influence transmission of this arbovirus. This study assessed the ecological impacts of dryland salinity on mosquitoes, mammalian hosts and their interactions to influence the potential for RRV transmission. Many aquatic insect taxa colonise ephemeral water bodies directly as adults or by oviposition. Using a manipulative experiment and sampling from ephemeral water bodies in the Wheatbelt, I demonstrated that salinity of water bodies can modify colonisation behaviour and the distribution of some organisms across the landscape. Halosensitive fauna selected less saline mesocosms for oviposition and colonisation. In particular, Culex australicus Dobrotworksy and Drummond and Anopheles annulipes Giles (Diptera: Culicidae), potential competitors with Ae. camptorhynchus, avoided ovipostion in saline mesocosms and water bodies in the field. This finding suggests salinity influences behaviour and may reduce interspecific interactions between these taxa and Ae. camptorhynchus at higher salinities. Using extensive field surveys of ephemeral water bodies in the Wheatbelt I found mosquitoes frequently colonised ephemeral water bodies, responded positively to rainfall, and populated smaller water bodies more densely than larger water bodies. The habitat characteristics of ephemeral water bodies changed in association with salinity. Consequently there were both direct and indirect associations between salinity and colonising mosquitoes. Ultimately the structure of mosquito assemblages changed with increasing salinity, favouring an increased regional distribution and abundance of Ae. camptorhynchus. The direct implication of this result is secondary salinisation has enhanced the vectorial potential for RRV transmission in the WA Wheatbelt. ... This thesis contributes to an emerging body of research aimed at delineating important ecological processes which determine transmission of infections disease. Collectively the findings in this study suggest dryland salinity enhances the potential for RRV activity in the Wheatbelt. Currently, human RRV notifications in the Wheatbelt do not reflect the salinity-RRV transmission potential in that area, but appear to be associated with dispersal of RRV from the enzootic coastal zone of southwest WA. I speculate dryland salinity is a determinant of potential for RRV transmission, but not activity. Dryland salinity is predicted to undergo a two to four fold expansion by 2050, which will increase the regional potential for RRV activity. Preservation and restoration of freshwater ecosystems may ameliorate the potential for transmission of RRV and, possibly, human disease incidence.

Many aspects concerning the association of riverine fish with in-channel habitat remain poorly understood, greatly hindering the ability of researchers and managers to address declines in fish assemblages. Recent insights gained from landscape ecology suggest that small, uni-scalar approaches are unlikely to effectively determine those factors that influence riverine structure and function and mediate fish-habitat associations. There appears to be merit in using multiple-scale designs built upon a geomorphologically-derived hierarchy to bridge small, intermediate and large spatial scales in large rivers. This thesis employs a hierarchical design encompassing functional process zones (referred to hereafter as zones), reaches and mesohabitats to investigate fish-habitat associations as well as explore patterns of in-channel habitat structure in one of Australia's largest dryland river systems; the Barwon-Darling River. In this thesis, empirical evidence is presented showing that large dryland rivers are inherently complex in structure and different facets of existing conceptual models of landscape ecology must be refined when applied to these systems. In-channel habitat and fish exist within a hierarchical arrangement of spatial scales in the riverscape, displaying properties of discontinuities, longitudinal patterns and patch mosaics. During low flows that predominate for the majority of time in the Barwon-Darling River there is a significant difference in fish assemblage composition among mesohabitats. There is a strong association between large wood and golden perch, Murray cod and carp, but only a weak association with bony herring. Golden perch and Murray cod are large wood specialists, whereas carp are more general in there use of mesohabitats. Bony herring are strongly associated with smooth and irregular banks but are ubiquitous in most mesohabitats. Open water (mid-channel and deep pool) mesohabitats are characterised by relatively low abundances of all species and a particularly weak association with golden perch, Murray cod and carp. Murray cod are weakly associated with matted bank, whereas carp and bony herring associate with this mesohabitat patch in low abundance. Nocturnal sampling provided useful information on size-related use of habitat that was not evident from day sampling. Both bony herring and carp exhibited a variety of habitat use patterns throughout the die1 period and throughout their lifetime, with temporal partitioning of habitat use by juvenile bony herring and carp evident. Much of the strong association between bony herring and smooth and irregular banks was due to the abundance of juveniles (<100mm in length) in these mesohabitats. Adult bony herring (>100mm length) occupied large wood more than smooth and irregular banks. At night, juvenile bony herring were not captured, suggesting the use of deeper water habitats. Adult bony herring were captured at night and occupjed large wood, smooth bank and irregular bank. Juvenile carp (<200mm length) were more abundant at night and aggregated in smooth and irregular banks more than any other mesohabitat patch. Adult carp (>200mm length) occupied large wood during both day and night. There is a downstream pattern of change in the fish assemblage among river zones, with reaches in Zone 2 containing a larger proportion of introduced species (carp and goldfish) because of a significantly lower abundance of native species (bony herring, golden perch and Murray cod) than all other zones. In comparison, the fish assemblage of Zone 3 was characterised by a comparatively higher abundance of the native species bony herring, golden perch and Murray cod. A significant proportion of the amongreach variability in fish assemblage composition was explained at the zone scale, suggesting that geomorphological influences may impose some degree of top-down constraint over fish assemblage distribution. Although mesohabitat composition among reaches in the Barwon-Darling River also changed throughout the study area, this pattern explained very little of the large-scale distribution of the fish assemblage, with most of the variability in assemblage distribution remaining unexplained. Therefore, although mesohabitat patches strongly influence the distribution of species within reaches, they explain very little of assemblage composition at intermediate zone and larger river scales. These findings suggest that small scale mesohabitat rehabilitation projects within reaches are unlikely to produce measurable benefits for the fish assemblage over intermediate and large spatial scales in the Barwon-Darling River. This indicates the importance taking a holistic approach to river rehabilitation that correctly identifies and targets limiting processes at the correct scales. The variable nature of flow-pulse dynamics in the Barwon-Darling River creates a shifting habitat mosaic that serves to maintain an ever-changing arrangement of habitat patches. The inundation dynamics of large wood habitat described in this thesis highlights the fragmented nature of mesohabitat patches, with the largest proportion of total in-channel large wood remaining unavailable to fish for the majority of the time. At low flows there is a mosaic of large wood habitat and with increasing discharge more potential large wood habitat becomes available and does so in a complex spatial manner. What results in this dryland river is a dynamic pattern of spatio-temporal patchiness in large wood habitat availability that is seen both longitudinally among different river zones and vertically among different heights in the river channel. Water resource development impacts on this shifting habitat mosaic. Projects undertaking both fish habitat assessment and rehabilitation need to carefully consider spatial scale since the drivers of fish assemblage structure can occur at scales well beyond that of the reach. Fish-habitat associations occurring at small spatial scales can become decoupled by process occurring across large spatial scales, making responses in the fish assemblage hard to predict. As rivers become increasingly channelised, there is an urgent need to apply research such as that conducted in this thesis to better understand the role that in-channel habitats play in supporting fish and other ecosystem processes. Habitat rehabilitation projects need to be refined to consider the appropriate scales at which fish assemblages associate with habitat. Failure to do so risks wasting resources and forgoes valuable opportunities for addressing declines in native fish populations. Adopting multi-scalar approaches to understanding ecological processes in aquatic ecosystems, as developed in this thesis, should be a priority of research and management. To do so will enable more effective determination of those factors that influence riverine structure and function at the approariate scale.

Drylands occupy about one-third of the world's land surface area and rivers in these regions have less predictable flow regimes than those in humid tropical and temperate regions. Australia's dryland river-floodplain systems cycle through recurrent periods of floods and droughts, oflen resulting in extreme hydrological variability. As a result, these systems have been described as having a 'boom and boost' ecology with periods of high productivity associated with flooding. Not surprisingly, flow and its variability have been recognised as major driving forces in the ecological functioning of Australian rivers and responses to flow variability from fish and aquatic invertebrates have been reasonably well described. Furthermore, the reduced amount of water reaching floodplain waterbodies due to river regulation has been held responsible for successional changes in aquatic biota and, consequently, the resources available for both fish and invertebrates. However, information regarding the impacts of water resource development has generally focused on within-channel processes of Australian rivers, not on floodplains, which are arguably more affected by water development. The following dissertation is concerned with how different types of natural and modified floodplain lagoons are able to trophically support their fish communities in the floodplain of the Macintyre River, Border Rivers catchment (QLD/NSW), a regulated dryland river. This study focuses on the influence of flooding and the implications of an extended dry period, and different levels of flow regulation, on the feeding ecology of selected fish species (Ambassis agassizil, Lelopotherapon unicolor and Nematalosa erebi) between 2001 and 2003. Food resources consumed by fish are hypothesised to vary in response to flooding, when inundation of isolated lagoons and vast floodplain areas can result in a burst of primary and secondary productivity. Given the permanently elevated water levels of some regulated floodplain lagoons, fish diets are hypothesised to be less variable in these floodplain habitats in comparison to diets of fish from floodplain lagoons with natural flow and water regime. Feeding ecology is examined firstly, in terms of diet composition of selected fish species, using stomach content analysis, and secondly, in relation to possible energy sources sustaining fish (using stable isotope analysis) in selected floodplain lagoons and a site in the main channel of the Macintyre River. The information produced should allow managers to take variations in food resources, food web structure and dietary ecology into account in management regimes for refugia and dryland systems in general. Factors such as diel and ontogenetic variations in dietary composition and food intake by fish are shown to considerably affect ovemll dietary patterns of each study species. Therefore, it is important to understand the contributions of such factors to the variability of fish dietary patterns before performing studies on resource use by fish in floodplain habitats of the Macintyre River. Major food categories consumed by the study species were zooplankton, aquatic invertebrates and detrital material. Zooplankton was of particular importance as this food item was ingested by all three study species at some stage of their life history. Spatial and temporal variation in diet composition of the study species was mostly associated with changes in prey items available across floodplain habitats and between seasons (summer/winter). The low magnitude of flooding events during the study period is arguably the most likely factor influencing the lack of patterns of variation in fish diets in floodplain habitats subject to flooding, whereas in non-flooded lagoons the observed dietary variation was a consequence of successional changes in composition of the aquatic fauna as the dry season progressed. Water regime had an important effect on differences in fish diet composition across lagoons, but further evaluation of the influence of flooding is needed due to overall lack of major flooding events during the study period. Autochthonous resources, namely plankton, were the basis of the food web and phytoplankton in the seston is the most likely ultimate energy source for fish consumers, via planktonic suspension feeders (zooplankton). Nevertheless, organic mailer could not be disregarded as an important energy source for invertebrates and higher consumers. In general, the present study does not provide support for the major models predicting the ftinctioning of large rivers, such as the River Continuum Concept and Flood Pulse Concept, which argue that allochthonous organic matter either from upstream or from the floodplain are the most important sources of carbon supporting higher consumers. In contrast, the Riverine Productivity Model would be more appropriate to describe the food web and energy sources for consumers in the Macintyre River floodplain as this model suggests that local productivity, based on autochthonous phytoplankton and organic matter, ftiels food webs in large rivers. The results of this study suggest that factors known to affect phytoplankton production in floodplain lagoons (e.g. flow regulation, turbidity and nutrient/herbicide inputs) must be seriously considered in current landscape and water management practices.

Drylands occupy about one-third of the world's land surface area and rivers in these regions have less predictable flow regimes than those in humid tropical and temperate regions. Australia's dryland river-floodplain systems cycle through recurrent periods of floods and droughts, oflen resulting in extreme hydrological variability. As a result, these systems have been described as having a 'boom and boost' ecology with periods of high productivity associated with flooding. Not surprisingly, flow and its variability have been recognised as major driving forces in the ecological functioning of Australian rivers and responses to flow variability from fish and aquatic invertebrates have been reasonably well described. Furthermore, the reduced amount of water reaching floodplain waterbodies due to river regulation has been held responsible for successional changes in aquatic biota and, consequently, the resources available for both fish and invertebrates. However, information regarding the impacts of water resource development has generally focused on within-channel processes of Australian rivers, not on floodplains, which are arguably more affected by water development. The following dissertation is concerned with how different types of natural and modified floodplain lagoons are able to trophically support their fish communities in the floodplain of the Macintyre River, Border Rivers catchment (QLD/NSW), a regulated dryland river. This study focuses on the influence of flooding and the implications of an extended dry period, and different levels of flow regulation, on the feeding ecology of selected fish species (Ambassis agassizil, Lelopotherapon unicolor and Nematalosa erebi) between 2001 and 2003. Food resources consumed by fish are hypothesised to vary in response to flooding, when inundation of isolated lagoons and vast floodplain areas can result in a burst of primary and secondary productivity. Given the permanently elevated water levels of some regulated floodplain lagoons, fish diets are hypothesised to be less variable in these floodplain habitats in comparison to diets of fish from floodplain lagoons with natural flow and water regime. Feeding ecology is examined firstly, in terms of diet composition of selected fish species, using stomach content analysis, and secondly, in relation to possible energy sources sustaining fish (using stable isotope analysis) in selected floodplain lagoons and a site in the main channel of the Macintyre River. The information produced should allow managers to take variations in food resources, food web structure and dietary ecology into account in management regimes for refugia and dryland systems in general. Factors such as diel and ontogenetic variations in dietary composition and food intake by fish are shown to considerably affect ovemll dietary patterns of each study species. Therefore, it is important to understand the contributions of such factors to the variability of fish dietary patterns before performing studies on resource use by fish in floodplain habitats of the Macintyre River. Major food categories consumed by the study species were zooplankton, aquatic invertebrates and detrital material. Zooplankton was of particular importance as this food item was ingested by all three study species at some stage of their life history. Spatial and temporal variation in diet composition of the study species was mostly associated with changes in prey items available across floodplain habitats and between seasons (summer/winter). The low magnitude of flooding events during the study period is arguably the most likely factor influencing the lack of patterns of variation in fish diets in floodplain habitats subject to flooding, whereas in non-flooded lagoons the observed dietary variation was a consequence of successional changes in composition of the aquatic fauna as the dry season progressed. Water regime had an important effect on differences in fish diet composition across lagoons, but further evaluation of the influence of flooding is needed due to overall lack of major flooding events during the study period. Autochthonous resources, namely plankton, were the basis of the food web and phytoplankton in the seston is the most likely ultimate energy source for fish consumers, via planktonic suspension feeders (zooplankton). Nevertheless, organic mailer could not be disregarded as an important energy source for invertebrates and higher consumers. In general, the present study does not provide support for the major models predicting the ftinctioning of large rivers, such as the River Continuum Concept and Flood Pulse Concept, which argue that allochthonous organic matter either from upstream or from the floodplain are the most important sources of carbon supporting higher consumers. In contrast, the Riverine Productivity Model would be more appropriate to describe the food web and energy sources for consumers in the Macintyre River floodplain as this model suggests that local productivity, based on autochthonous phytoplankton and organic matter, ftiels food webs in large rivers. The results of this study suggest that factors known to affect phytoplankton production in floodplain lagoons (e.g. flow regulation, turbidity and nutrient/herbicide inputs) must be seriously considered in current landscape and water management practices.
Thesis (PhD Doctorate)
Doctor of Philosophy (PhD)
School of Australian Environmental Studies
Full Text

Riverine landscapes are complex. More than just a single channel, they comprise a shifting mosaic of hydrogeomorphic patches with varying physical and biological characteristics. These patches are connected by water during flows of varying magnitude and frequency, at a range of spatial and temporal scales. Combined, landscape complexity and hydrological connectivity create biological diversity that in turn maintains the productivity, ecological function, and resilience of these systems. This thesis investigates the ecological importance of spatial heterogeneity and temporal hydrological connectivity in a dryland floodplain river landscape. It focuses on anabranch channels, and uses major carbon sources in these and adjacent landscape patches as indicators of ecological pattern and process. A conceptual model was proposed, describing the potential effects upon the distribution and availability of major carbon sources of: a) a spatial mosaic of hydrogeomorphic patches in the landscape (e.g. anabranches, river channel, and wider floodplain); and b) four primary temporal phases of hydrological connection during flow pulses (disconnection, partial connection, complete connection, and draining). This was then tested by data collected over a three year period from a 16 km reach of the lower Macintyre River (NSW/QLD Australia). Results were examined at multiple spatial scales (patch scale � river channel vs. anabranches vs. floodplain; between individual anabranches; and within anabranches � entry, middle and exit sites). The data indicate that spatial heterogeneity in the lower Macintyre River landscape significantly influences ecological pattern. Carbon quantity was greater in anabranch channels compared to adjacent river channel patches, but not compared to the floodplain; while carbon quality was greater in anabranch channels compared to both adjacent river channel and floodplain patches. Stable isotope analysis indicated that carbon sources that were predominantly found in anabranch channels supported both anabranch and river organisms during a winter disconnection phase. Other carbon sources found in the main river channel and the wider floodplain appeared to play a comparatively minimal role in the food web. Different phases of hydrological connection between anabranch channels and the main river channel were associated with differences in the availability of carbon sources. In the river channel, draining of water from anabranches (the draining phase) was associated with relatively high concentrations of dissolved organic carbon (DOC) and low concentrations of phytoplankton. Conversely, the disconnection phase was associated with relatively low concentrations of DOC and high concentrations of phytoplankton in the river channel. In anabranch channels and their waterbodies, the disconnection and draining phases were associated with high concentrations of both DOC and phytoplankton. Concentrations of these carbon sources were lowest in anabranches during the partial and complete connection phases. Different hydrological connection phases were also associated with changes in trophic status in the aquatic components of the landscape. On the riverbanks, relatively low rates of benthic production and respiration during the complete connection phase were associated with heterotrophy. The remaining phases appeared to be autotrophic. Benthic production on riverbanks was greatest during the disconnection phase, and respiration was greatest during the partial connection phase. In the anabranch channels, rates of production and respiration were similar during the disconnection phase, and were associated with heterotrophy in the anabranch waterbodies. The remaining phases appeared to be autotrophic. Respiration was greatest in anabranches during the disconnection phase, and production was greatest during the draining phase. Both production and respiration were lowest during complete connection. These differences and changes varied according to the landscape patch examined. At a landscape scale, anabranch channels act as both sinks and suppliers of carbon. High rates of sediment deposition facilitate their role as sinks for sediment-associated carbon and other particulate, refractory carbon sources. Simultaneously, anabranch channels supply aquatic carbon sources from their waterbodies, as well as via processes such as inundation-stimulated release of DOC from surface sediments. Modelled data indicated that water resource development reduces the frequency and duration of connection between anabranch channels and the main river channel. This loss of landscape complexity via loss of connectivity with anabranches has the potential to reduce the total availability of carbon sources to the ecosystem, as demonstrated by a modelled 13% reduction in potential dissolved organic carbon release from anabranch sediments. This thesis has demonstrated the importance of spatial heterogeneity in riverine landscapes, by documenting its association with variability in the distribution and quality of primary energy sources for the ecosystem. It has shown that this variability is augmented by different phases of hydrological connectivity over time. Spatial heterogeneity and hydrological connectivity interact to increase the diversity and availability of ecological energy sources across the riverine landscape, at multiple spatial and temporal scales. This has positive implications for the resilience and sustainability of the system. Anabranch channels are particularly important facilitators of these effects in this dryland floodplain river system. Anabranch channels are �intermediate� in terms of spatial placement, temporal hydrological connection, and availability of carbon sources; of high value in terms of high-quality carbon sources; and relatively easy to target for management because of their defined commence-to-flow levels. Further research should be directed toward evaluating other ecological roles of anabranch channels in dryland rivers, thereby providing a more complete understanding of the importance of connectivity between these features and other patches. This knowledge would assist management of floodplain river landscapes at larger regional scales, including amelioration of the effects of water resource development.

Many aspects of dryland river research, such as channel forms and processes, remain poorly investigated at the catchment scale because of the practical difficulties and costs of carrying out fieldwork in remote dryland regions. Remote sensing techniques, including Shuttle Radar Topography Mission (SRTM) data, and modelling are partly overcoming these difficulties. This study has used fieldwork, remote sensing and computational modelling to investigate channel forms and processes along the Diamantina River at the catchment scale, a large dryland river in the Lake Eyre Basin, Australia. It focuses on comparing the fluvial morphology and hydrological characteristics associated with selected (dominant) channel forms with the primary anastomosing, meandering, anabranch and braided channel forms of the Diamantina River receiving particular attention. The Diamantina River is comprised of a channelised inner floodplain (IFP), bounded by a non-channelised outer floodplain (OFP). Channel forms within the IFP were found to be significantly different in terms of their; sediment size, cross-sectional geometry, and channel form pattern both laterally and in the downstream direction.
Thesis (PhD Doctorate)
Doctor of Philosophy (PhD)
Griffith School of Environment
Science, Environment, Engineering and Technology
Full Text

[Truncated abstract] A functional ecosystem is increasingly being recognised as a requirement for health and well being of resident human populations. Clearing of native vegetation for agriculture has left 1.047 million hectares of south-west Western Australia affected by a severe form of environmental degradation, dryland salinity, characterised by secondary soil salinisation and waterlogging. This area may expand by a further 1.7-3.4 million hectares if current trends continue. Ecosystems in saline affected regions display many of the classic characteristics of Ecosystem Distress Syndrome (EDS). One outcome of EDS that has not yet been investigated in relation to dryland salinity is adverse human health implications. This thesis focuses on one such potential adverse health outcome: increased incidence of Ross River virus (RRV), the most common mosquito-borne disease in Australia. Spatial analysis of RRV notifications did not reveal a significant association with dryland salinity. To overcome inherent limitations with notification data, serological RRV antibody prevalence was also investigated, and again no significant association with dryland salinity was detected. However, the spatial scale imposed limited the sensitivity of both studies. ... This thesis represents the first attempt to prospectively investigate the influence of secondary soil salinity on mosquito-borne disease by combining entomological, environmental and epidemiological data. The evidence collected indicates that RRV disease incidence is not currently a significant population health priority in areas affected by dryland salinity despite the dominant presence of Ae. camptorhynchus. Potential limiting factors include; local climatic impact on the seasonal mosquito population dynamics; vertebrate host distribution and feeding behaviour of Ae. camptorhynchus; and the scarce and uneven human population distribution across the region. However, the potential for increased disease risk in dryland salinity affected areas to become apparent in the future cannot be discounted, particularly in light of the increasing extent predicted to develop over coming decades before any benefits of amelioration strategies are observed. Finally, it is important to note that both dryland salinity and salinity induced by irrigation are important forms of environmental degradation in arid and semi-arid worldwide, with a total population of over 400 million people. Potential health risks will of course vary widely across different regions depending on a range of factors specific to the local region and the complex interactions between them. It is therefore not possible to make broad generalisations. The need is highlighted for similar research in other regions and it is contended that an ecosystem health framework provides the necessary basis for such investigations.

This study focuses on the constraints, adaptations and innovations in the livelihoods of Orma pastoralists. The fieldwork took place with families around Tiltila, Waldena and Kalalani over a period of 9 months in 2007/08. The position of pastoralist peoples in East Africa is characterised by social, political and economic marginalisation, weak land tenure, and declining per capita livestock holdings, while their shrinking grazing lands are widely regarded to be on the front line of climate change, both in terms of climate impacts and biofuel/agribusiness land pressure. The dearth of good quality data on pastoralist populations and livelihoods is widely cited as one of the fundamental barriers to improving the effectiveness of development support in the drylands. This study seeks to address these knowledge gaps for Orma pastoralists, while contributing to the body of theory on pastoralist livelihood dynamics. Data on the effects of wealth, education and food aid on household mobility were analysed using a theory of asset threshold dynamics. An adapted typology of livelihood strategies was developed to interpret and structure the data. Using child mortality as a proxy for respondent health, the impacts of wealth and mobility status on families’ health were explored. In the context of an almost total lack of data on community redistribution of food aid, both for the Orma and for East African pastoralists more generally, the study provides empirical data on de facto community food aid allocation patterns. The study also examines a controversial large-scale expropriation of land in Tana River (subsidised under the Kyoto Protocol’s Clean Development Mechanism) which will undermine the capacity of Orma pastoralists and other minority groups, to adapt to increased and more extreme environmental variability. In an environment in which enrolment in formal education is very low (particularly for girls), the study found that community nursery schools represent a relatively recent (and thus far undocumented) innovation organised and funded by groups of parents. The data demonstrates unprecedented levels of female enrolment despite cost constraints faced by least wealthy families. It is therefore suggested that incorporation of the community nursery model into the basic literacy element of the proposed national distance learning strategy, offers significant potential for addressing ‘Education For All’ in Kenya’s drylands.

Thesis (PhD)--Stellenbosch University, 2014.
ENGLISH ABSTRACT: Bugan, R.D.H. Modelling and regulating hydrosalinity dynamics in the Sandspruit River catchment (Western Cape). PhD dissertation, Stellenbosch University. The presence and impacts of dryland salinity are increasingly become evident in the semi-arid Western Cape. This may have serious consequences for a region which has already been classified as water scarce. This dissertation is a first attempt at providing a methodology for regulating the hydrosalinity dynamics in a catchment affected by dryland salinity, i.e. the Sandspruit catchment, through the use of a distributed hydrological model. It documents the entire hydrological modelling process, i.e. the progression from data collection to model application. A review of previous work has revealed that salinisation is a result of land use change from perennial indigenous deep rooted vegetation to annual shallow rooted cropping systems. This has altered the water and salinity dynamics in the catchment resulting in the mobilisation of stored salts and subsequently the salinisation of land and water resources. The identification of dryland salinity mitigation measures requires thorough knowledge of the water and salinity dynamics of the study area. A detailed water balance and conceptual flow model was calculated and developed for the Sandspruit catchment. The annual streamflow and precipitation ranged between 0.026 mm a-1 - 75.401 mm a-1 and 351 and 655 mm a-1 (averaging at 473 mm a- 1), respectively. Evapotranspiration was found to be the dominant component of the water balance, as it comprises, on average, 94% of precipitation. Streamflow is interpreted to be driven by quickflow, i.e. overland flow and interflow, with minimal contribution from groundwater. Quantification of the catchment scale salinity fluxes indicated the Sandspruit catchment is in a state of salt depletion, i.e. salt output exceeds salt input. The total salt input to and output from the Sandspruit catchment ranged between 2 261 - 3 684 t Catchment-1 and 12 671 t a-1 - 21 409 t a-1, respectively. Knowledge of the spatial distribution of salt storage is essential for identifying target areas to implement mitigation measures. A correlation between the salinity of sediment samples collected during borehole drilling and the groundwater EC (r2 = 0.75) allowed for the point data of salt storage to be interpolated. Interpolated salt storage ranged between 3 t ha-1 and 674 t ha-1, exhibiting generally increasing storage with decreasing ground elevation. The quantified water and salinity fluxes formed the basis for the application of the JAMS/J2000-NaCl hydrological model in the Sandspruit catchment. The model was able to adequately simulate the hydrology of the catchment, exhibiting a daily Nash-Sutcliffe Efficiency of 0.61. The simulated and observed salt outputs exhibited discrepancies at daily scale but were comparable at an annual scale. Recharge control, through the introduction of deep rooted perennial species, has been identified as the dominant measure to mitigate the impacts of dryland salinity. The effect of various land use change scenarios on the catchment hydrosalinity balance was evaluated with the JAMS/J2000-NaCl model. The simulated hydrosalinity balance exhibited sensitivity to land use change, with rooting depth being the main factor, and the spatial distribution of vegetation. Revegetation with Mixed forests, Evergreen forests and Range Brush were most effective in reducing salt leaching, when the “salinity hotspots” were targeted for re-vegetation (Scenario 3). This re-vegetation strategy resulted in an almost 50% reduction in catchment salt output. Overall, the results of the scenario simulations provided evidence for the consideration of re-vegetation strategies as a dryland salinity mitigation measure in the Sandspruit catchment. The importance of a targeted approach was also highlighted, i.e. mitigation measures should be implemented in areas which exhibit a high salt storage.
AFRIKAANSE OPSOMMING: Die teenwoordigheid en impak van droëland versouting word duideliker in die halfdor Wes-Kaap. Dit kan ernstige gevolge inhou vir die streek wat reeds as ‘n waterskaars area geklassifiseer is. Hierdie verhandeling is ‘n poging om ‘n metode vir die regulering van waterversoutingsdinamiek in ‘n opvangsgebied wat deur verbrakking van grond geaffekteer is, i.e. die Sandspruit opvangsgebied, te bepaal deur gebruik te maak van ‘n verspreide hidrologiese model. Dit dokumenteer die volledige hidrologiese modeleringsproses, i.e. vanaf die versameling van data tot die aanwending van die model. ‘n Oorsig van vorige studies bevestig dat versouting ‘n gevolg is van die verandering vanaf meerjarige inheemse plantegroei met diep wortelstelsels tot die verbouing van gewasse met vlak wortelstelsels. Dit het ‘n verandering in die water en versoutingsdinamiek in die opvangsgebied tot gevolg gehad in soverre dat dit die mobilisering van versamelde soute en gevolglike versouting van die grond en waterbronne tot gevolg gehad het. Die identifikasie van maatreëls om droëland versouting te verminder, vereis ‘n deeglike kennis van die water- en versoutingsdinamiek van die studie gebied. ‘n Gedetailleerde waterbalans en konseptuele vloeimodel was bereken vir die Sandspruit opvangsgebied. Die jaarlikse stroomvloei en neerslag varieer tussen 0.026 - 75.401 mm a-1 en 351 - 655 mm a-1 (gemiddeld 473 mm a-1), onderskeidelik. Dit is bevind dat evapotranspirasie die dominante komponent is van die waterbalans, aangesien dit 94% uitmaak van die neerslag. Stroomvloei word aangedryf deur snelvloei, i.e oppervlakvloei en deurvloei met minimale bydrae van grondwater. Die omvang van die opvangsgebied se soutgehalte het aangedui dat die Sandspruit opvangsgebied tans ‘n toestand van soutvermindering ondervind, i.e. sout invloei word oorskrei deur sout uitvloei. Die totale sout in- en uitvloei in die Sandspruit opvangsgebied het gewissel tussen 2 261 - 3 684 t Opvangsgebied-1 en 12 671 - 21 409 t a-1 onderskeidelik. Kennis van die ruimtelike verspreiding van opbou van soute in die grond is belangrik om areas te identifiseer vir die toepassing van voorsorgmaatreëls. ‘n Korrelasie tussen die soutinhoud van sediment monsters wat versamel is tydens die boor van boorgate en die grondwater EC (r2 = 0.75) het die interpolasie van puntdata waar sout aansamel toegelaat. Hierdie interpolasie van sout aansameling het gewissel tussen 3 t ha-1 and 674 t ha-1 en bewys ‘n algemeen verhoogde opbou met vermindering in grond elevasie. Die hoeveelheidsbepaling van water en die versoutings roetering vorm die basis vir die aanwending van die JAMS/J2000-NaCl hidrologiese model in die Sandspruit opvangsgebied. Die model het ‘n geskikte simulasie van die hidrologie van die opvangsgebied geimplimenteer, en het ‘n daaglikse Nash-Sutcliffe Efficiency van 0.61 getoon. Die gesimuleerde en waargenome sout afvoer het teenstrydighede getoon t.o.v daaglike metings maar was verenigbaar op ‘n jaarlikse skaal. Aanvullingsbeheer deur die aanplanting van meerjarige spesies met diep wortelstelsels is geidentifiseer as ‘n oorwegende maatreël om die impak van verbrakking van grond teë te werk. Die effek van verskeie veranderde grondgebuike op die balans van die opvangsgebied se hidro-soutgehalte is geëvalueer met die JAMS/J2000-NaCl model. Die balans van gesimuleerde hidro-saliniteit het ‘n sensitiwiteit t.o.v veranderde grondgebruik getoon, met die diepte van wortelstels as die hoof faktor, asook die ruimtelike verspreiding van plantegroei. Hervestiging van verskeie tipes bome, meerjarige bome en “Range Brush” was die effektiefste t.o.v die vermindering in sout uitloging waar die soutgraad konsentrasie areas ge-oormerk was vir hervestiging van plantegroei (Scenario 3). Die strategie van hervestinging het ‘n afname van 50% in versouting in die opvangsgebied getoon. In die geheel het die resultate van die simulasies genoegsame bewys gelewer dat ‘n strategie van hervestiging en groei as ‘n voorsorg maatreël kan dien om droëland versouting in die Sandspruit opvangsgebied teen te werk. Die belangrikeid daarvan om ‘n geteikende benadering te volg is benadruk, i.e. voorsorg maatreëls kan toegepas word in areas met hoë soutgehalte.

Driven by many factors, the water supply services (streamflow and groundwater) of many rivers in the dryland area of China have declined significantly. This aggravates the inherent severe water shortages and results in increased severity in the water use conflicts that are threatening sustainable development in the region. Innovative strategies towards more water-efficient land management are vital for enhancing water quantity to ensure water supply security. A key step in the successful development and implementation of such measures is to understand the response of hydrological processes and related services to changes in land management and climate. To this end, it was decided to investigate these processes and responses in the upper reaches of the Jing River (Jinghe), an important meso-scale watershed in the middle reaches of the Yellow River on the Loess Plateau (NW China). It has been shown that vegetation restoration efforts (planting trees and grass) are effective in controlling soil erosion on the Loess Plateau. Shifts in land cover/use lead to modifications of soil physical properties. Yet, it remains unclear if the hydraulic properties have also been improved by vegetation restoration. A better understanding of how vegetation restoration alters soil structure and related soil hydraulic properties, such as water conductivity and soil water storage capacity, is necessary. Three adjacent sites, with comparable soil texture, soil type, and topography but contrasting land cover (Black locust forest, grassland, and cropland), were investigated in a small catchment in the upstream Jinghe watershed (near Jingchuan, Gansu province). Seasonal variations of soil hydraulic properties in topsoil and subsoil were examined. Results revealed that the type of land use had a significant impact on field-saturated, near-saturated hydraulic conductivity, and soil water characteristics. Specifically, conversion from cropland to grass or forests promotes infiltration capacity as a result of increased saturated hydraulic conductivity, air capacity, and macroporosity. Moreover, conversion from cropland to forest tends to promote the formation of mesopores that increase soil water storage capacity. Tillage in cropland temporarily created well-structured topsoil, but also compacted subsoil, as indicated by low subsoil saturated hydraulic conductivity, air capacity, and plant available water capacity. An impact of land cover conversion on unsaturated hydraulic conductivities was not identified, indicating that changes in land cover do not affect functional meso- and microporosity. Changes in soil hydraulic properties and associated hydrological processes and services due to soil conservation efforts need to be considered, should soil conservation measures be implemented in water-limited regions for sustaining adequate water supply. To differentiate between the impacts of land management and climate change on streamflow, the variation of annual streamflow, precipitation, potential evapotranspiration, and climatic water balance in a small catchment of the upstream Jinghe watershed (near Pingliang, Gansu province) was examined during the period of 1955 – 2004. During this time the relative contributions of changes in land management and climate to the reduction of streamflow were estimated. A statistically significant decreasing trend of -1.14 mm y-1 in annual streamflow was detected. Furthermore, an abrupt streamflow reduction due to afforestation and construction of terraces and check-dams was identified around 1980. Remarkably, 74% of the total reduction in mean annual streamflow can be attributed to the soil conservation measures. Among various conservation measures, streamflow could be considerably reduced by afforestation and terracing (including damland creation), due to their low contribution to water yield. In contrast, slope farmland and grassland can maintain a certain level of water supply services due to higher runoff coefficients. According to a meta-analysis of the published studies on the Loess Plateau, the impact of changes in land management on annual streamflow appears to diminish with increasing catchment size while the impact of climate change appears uniform across space. This means that there is a dependency between the catchment size and the response of hydrological processes to environmental change. At least at the local scale, it appears that well-considered land management may help to ensure the water supply services. Due to limited surface water availability, groundwater is an essential water source for supporting ecosystem and socio-economic development in the dryland region. However, the groundwater process is susceptible and vulnerable to changes in climate and landscape (i.e., land cover and form) that in turn can result in profound adverse consequences on water supply services in water-limited regions. In addition, an improved understanding of the response of groundwater related processes to natural and artificial disturbances is likely to ensure more secure and more sustainable governance and management of such regions, as well as better options for adapting to climate change. Yet, this topic has seldom been researched, especially in areas that have already experienced large-scale alteration in landscape and are located in dryland regions, such as the Loess Plateau. Therefore, an investigation of the baseflow variation along the landscape change was conducted. The average annual baseflow has significantly decreased at catchment scale during the period of 1962 – 2002 without any obvious significant change in climate. At decadal scale, the reduction accounts for approximately 9% in the 1970s, 48% in the 1980s, and 92% in the 1990s, while the baseflow index declines averaging 5%, 16% and 67%, respectively. All of the monthly baseflow levels dropped at varying rates except in January, among which July was the most severe in terms of both magnitude (-4.17) and slope (-0.09 mm y-1). In perspective of landscape change, landform change (terrace and check-dam) tends to reduce baseflow by reallocation of surface fluxes and retention for crop growth causing limited deep drainage in other areas. Land cover change (i.e., afforestation) reduced the baseflow to a larger extent by enhanced evapotranspiration and thus hampered deep drainage as suggested by the soil moisture measurement underneath. The study indicates that knowledge about baseflow formation on catchment scale needs further improvement. Integrated soil conservation and water management for optimizing landscape structure and function in order to balance soil (erosion) and water (supply) related hydrological ecosystem services is vital. The governing processes to the changes of water-supply-services-related hydrological process (e.g., streamflow) are assumed to be different across space. To this end, the factors controlling streamflow were investigated on both a small and large scale. Streamflow in small catchments was found to be mainly controlled by precipitation and land cover type. On a larger scale, evaporative demand was found to be another additional major driving force. Hydrological modeling is a frequently used tool for the assessment of impacts of land use and climate change on water balance and water fluxes. However, application of the Soil and Water Assessment Tool (SWAT) model in the upstream Jinghe watershed was unsuccessful due to difficulties in calibration. The inability of the SWAT model to take the influence of terraces on steep slopes into consideration and the method how to calculate lateral flow were the main reasons for unsatisfactory calibration, at least for the current version of SWAT used in this study. Alternatively, Budyko’s frameworks were applied to predict the annual and long-term streamflow. However, the effect of changes in land management (e.g., afforestation) on streamflow could not be assessed due to a lack of vegetation factors. Therefore, an empirical analysis tool was derived based on an existing relationship for estimation. This method was found to be the most effective in reproducing the annual and long-term streamflow. The incorporation of temporal changes in land cover and form in the approach enables the estimation of the possible impact of soil conservation measures (e.g., afforestation or terracing). The importance of adaptive land management strategies for mitigating water shortage and securing the water supply services on the Loess Plateau was highlighted. A cross-sectoral view of the multiple services offered by managed ecosystems at different spatial scales under changing environments needs to be integrated to improve adaptive land management policy. In a water limited environment, such as the Loess Plateau, multiple ecosystem services including hydrological services need to be balanced with minimum trade-offs. This can only be achieved when management is based on a holistic understanding of the interdependencies among various ecosystem services and how they might change under alternative land management.

Water is a primary shared resource that connects all species across the landscape and can facilitate shared exposure to a community of waterborne pathogens. Despite remarkable global progress in sanitation and hygiene development in the past two decades, infectious diarrhea remains a prominent public health threat in sub-Saharan Africa. This thesis identifies and discusses persistent challenges limiting the success of current waterborne disease management strategies and several existing research hurdles that continue to impede characterization of microbial transmission and transport. In this work, the Chobe River watershed in Northern Botswana serves as a target study site for the application of hydrological modeling tools to quantify emergent water quality and health challenges in Southern Africa. A watershed model with extensive data requirements, the Hydrological Simulation Program – Fortran (HSPF), is used to identify primary data gaps and model assumptions that limit the progress of model development, and guide opportunities for data collection, tool development, and research direction. Environmental pathogen exposure risk and epidemiological outbreak dynamics are best described by interactions between the coupled human and environmental processes within a system. The challenge of reducing diarrheal disease incidence strengthens a call for research studies and management plans that join multiple disciplines and consider a range of spatiotemporal scales.
Master of Science

Tens of millions of dollars have been spent to control Tamarix (saltcedar) trees along waterways in the Southwestern United States for the purpose of increasing streamflow yet no increase in streamflow has been demonstrated. The Pecos River Ecosystem Project (PREP) served as a case study to characterize surface and groundwater interaction along the Pecos River in Texas, assess the influence of saltcedar transpiration on stream stage and water table fluctuations, and evaluate the impacts of large-scale saltcedar control on baseflows. This is the first study that has investigated the influence of saltcedar transpiration on surface and groundwater interaction and the first to provide a mechanistic explanation for the lack of measurable increase in streamflow. Neither saltcedar transpiration nor saltcedar removal influenced hydraulic gradients, streambank seepage, or stream elevations. The results of the plot scale studies indicate saltcedar transpiration along the Pecos River is lower than reported elsewhere and therefore may not yield detectable increases in baseflow. To extend the study to a much larger scale, we analyzed annual baseflows at the downstream end of 340 km river reach from 1999 (pretreatment) through 2009. Surprisingly, baseflows declined for four years after the project began despite additional acreages of saltcedar treatment each year. However, baseflow surged in 2005 and remained higher than the pretreatment year (1999) through 2009. Additional detailed analyses of reservoir release and delivery records and rainfall are needed to better understand contributions of rainfall and flow regulation to this increase. Tracer based studies to determine the relative contributions of releases and groundwater would also enable a better interpretation of the change in baseflows. We did not investigate any other reported benefits, such as restoration of native plant species, or reduced soil salinity, of saltcedar control.

Copies of author's previously published articles inserted.
Bibliography: p. 377-400.
xiv, 400, [20] p., [5] leaves of plates : ill. (some col.), maps ; 30 cm.
Thesis (Ph.D.)--University of Adelaide, Dept. of Zoology, 1995

This study presents a quantitative account of vegetation-soil relationships for the perennial vegetation of the Cooper Creek floodplain, in South Australia. Cooper Creek is an internationally significant and increasingly rare example of one of a naturally functioning, unregulated, dryland river system both nationally and internationally. The area for this study is delineated by the boundaries of the Ramsar listed Coongie Lakes wetland complex. This is a region of unique ecological significance: a highly biologically productive floodplain system within the extensive dune fields of the Strzelecki Desert. The current parlous environmental state of the rivers of the Murray Darling Basin reinforces the significance of Cooper Creek as a valuable reference system. Increased understanding of the functioning of this system provides valuable insights into future rehabilitation and restoration programs for degraded dysfunctional river systems elsewhere in Australia. The development of an ecological ‘knowledge framework’ for Australian dryland rivers is a still evolving process. This study has contributed to the development of this ecological knowledge framework through the study of the soils and vegetation examined at 138 sites in the region. A combination of indirect and direct gradient analyses in conjunction with generalised linear mixed modelling has revealed the main, statistically significant, edaphic factors influencing the distribution and abundance of a range of floodplain perennial plant species of the lower reaches of the Cooper Creek. These main edaphic factors influencing the range of species examined include: pH, salinity, texture, total organic carbon, cation exchange capacity, potassium and calcium carbonate. Detailed available information on the nature of the predominantly fine textured soils of the Cooper Creek floodplain is scarce. These soils represent the Vertosol group of the range of soil orders belonging to the Australian Soil Classification. This study presents the results of a detailed multidisciplinary investigation into the origin and properties of these soils The numerical classification of soil data has provided insight into the range of soil types on the floodplain and their associated physical and chemical characteristics. In addition to orthodox analytical methods the soils from the surface 10 cm at all sites were also analysed using mid infrared (MIR) spectral analysis. There is a dearth of MIR data for the floodplain soils of Australian dryland river systems. Formal analyses and personal observation have combined to provide insight into the potential significance of Eucalyptus coolabah as a key ecosystem species influencing the structure and functioning of floodplain ecology. Examination of Eucalyptus coolabah distribution has also provided insight into potentially significant groundwater recharge zones within the floodplain.