Artykuły w czasopismach na temat „CRISPR spacers”
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Horvath, Philippe, Dennis A. Romero, Anne-Claire Coûté-Monvoisin, Melissa Richards, Hélène Deveau, Sylvain Moineau, Patrick Boyaval, Christophe Fremaux i Rodolphe Barrangou. "Diversity, Activity, and Evolution of CRISPR Loci in Streptococcus thermophilus". Journal of Bacteriology 190, nr 4 (7.12.2007): 1401–12. http://dx.doi.org/10.1128/jb.01415-07.
Pełny tekst źródłaToro, Magaly, Guojie Cao, Wenting Ju, Marc Allard, Rodolphe Barrangou, Shaohua Zhao, Eric Brown i Jianghong Meng. "Association of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Elements with Specific Serotypes and Virulence Potential of Shiga Toxin-Producing Escherichia coli". Applied and Environmental Microbiology 80, nr 4 (13.12.2013): 1411–20. http://dx.doi.org/10.1128/aem.03018-13.
Pełny tekst źródłaAchigar, Rodrigo, Martina Scarrone, Geneviève M. Rousseau, Cécile Philippe, Felipe Machado, Valentina Duvós, María Pía Campot i in. "Ectopic Spacer Acquisition in Streptococcus thermophilus CRISPR3 Array". Microorganisms 9, nr 3 (1.03.2021): 512. http://dx.doi.org/10.3390/microorganisms9030512.
Pełny tekst źródłavan der Ploeg, Jan R. "Analysis of CRISPR in Streptococcus mutans suggests frequent occurrence of acquired immunity against infection by M102-like bacteriophages". Microbiology 155, nr 6 (1.06.2009): 1966–76. http://dx.doi.org/10.1099/mic.0.027508-0.
Pełny tekst źródłaSerbanescu, M. A., M. Cordova, K. Krastel, R. Flick, N. Beloglazova, A. Latos, A. F. Yakunin, D. B. Senadheera i D. G. Cvitkovitch. "Role of the Streptococcus mutans CRISPR-Cas Systems in Immunity and Cell Physiology". Journal of Bacteriology 197, nr 4 (8.12.2014): 749–61. http://dx.doi.org/10.1128/jb.02333-14.
Pełny tekst źródłaPavlova, Yekaterina S., David Paez-Espino, Andrew Yu Morozov i Ilya S. Belalov. "Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling". PLOS Computational Biology 17, nr 3 (26.03.2021): e1008841. http://dx.doi.org/10.1371/journal.pcbi.1008841.
Pełny tekst źródłaDeveau, Hélène, Rodolphe Barrangou, Josiane E. Garneau, Jessica Labonté, Christophe Fremaux, Patrick Boyaval, Dennis A. Romero, Philippe Horvath i Sylvain Moineau. "Phage Response to CRISPR-Encoded Resistance in Streptococcus thermophilus". Journal of Bacteriology 190, nr 4 (7.12.2007): 1390–400. http://dx.doi.org/10.1128/jb.01412-07.
Pełny tekst źródłaBolotin, Alexander, Benoit Quinquis, Alexei Sorokin i S. Dusko Ehrlich. "Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin". Microbiology 151, nr 8 (1.08.2005): 2551–61. http://dx.doi.org/10.1099/mic.0.28048-0.
Pełny tekst źródłaHeussler, Gary E., Jon L. Miller, Courtney E. Price, Alan J. Collins i George A. O'Toole. "Requirements for Pseudomonas aeruginosa Type I-F CRISPR-Cas Adaptation Determined Using a Biofilm Enrichment Assay". Journal of Bacteriology 198, nr 22 (29.08.2016): 3080–90. http://dx.doi.org/10.1128/jb.00458-16.
Pełny tekst źródłaLopatina, Anna, Sofia Medvedeva, Daria Artamonova, Matvey Kolesnik, Vasily Sitnik, Yaroslav Ispolatov i Konstantin Severinov. "Natural diversity of CRISPR spacers of Thermus : evidence of local spacer acquisition and global spacer exchange". Philosophical Transactions of the Royal Society B: Biological Sciences 374, nr 1772 (25.03.2019): 20180092. http://dx.doi.org/10.1098/rstb.2018.0092.
Pełny tekst źródłaMojica, F. J. M., C. Díez-Villaseñor, J. García-Martínez i C. Almendros. "Short motif sequences determine the targets of the prokaryotic CRISPR defence system". Microbiology 155, nr 3 (1.03.2009): 733–40. http://dx.doi.org/10.1099/mic.0.023960-0.
Pełny tekst źródłaBarrangou, Rodolphe, Anne-Claire Coûté-Monvoisin, Buffy Stahl, Isabelle Chavichvily, Florian Damange, Dennis A. Romero, Patrick Boyaval, Christophe Fremaux i Philippe Horvath. "Genomic impact of CRISPR immunization against bacteriophages". Biochemical Society Transactions 41, nr 6 (20.11.2013): 1383–91. http://dx.doi.org/10.1042/bst20130160.
Pełny tekst źródłaKiro, Ruth, Moran G. Goren, Ido Yosef i Udi Qimron. "CRISPR adaptation in Escherichia coli subtypeI-E system". Biochemical Society Transactions 41, nr 6 (20.11.2013): 1412–15. http://dx.doi.org/10.1042/bst20130109.
Pełny tekst źródłaBriner, Alexandra E., i Rodolphe Barrangou. "Lactobacillus buchneri Genotyping on the Basis of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Locus Diversity". Applied and Environmental Microbiology 80, nr 3 (22.11.2013): 994–1001. http://dx.doi.org/10.1128/aem.03015-13.
Pełny tekst źródłaSilva, Adrianne M. A., Ana C. O. Luz, Keyla V. M. Xavier, Maria P. S. Barros, Hirisleide B. Alves, Marcus V. A. Batista i Tereza C. Leal-Balbino. "Analysis of CRISPR/Cas Genetic Structure, Spacer Content and Molecular Epidemiology in Brazilian Acinetobacter baumannii Clinical Isolates". Pathogens 12, nr 6 (26.05.2023): 764. http://dx.doi.org/10.3390/pathogens12060764.
Pełny tekst źródłaWatson, B. N. J., R. A. Easingwood, B. Tong, M. Wolf, G. P. C. Salmond, R. H. J. Staals, M. Bostina i P. C. Fineran. "Different genetic and morphological outcomes for phages targeted by single or multiple CRISPR-Cas spacers". Philosophical Transactions of the Royal Society B: Biological Sciences 374, nr 1772 (25.03.2019): 20180090. http://dx.doi.org/10.1098/rstb.2018.0090.
Pełny tekst źródłaKuno, Sotaro, Takashi Yoshida, Takakazu Kaneko i Yoshihiko Sako. "Intricate Interactions between the Bloom-Forming Cyanobacterium Microcystis aeruginosa and Foreign Genetic Elements, Revealed by Diversified Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Signatures". Applied and Environmental Microbiology 78, nr 15 (25.05.2012): 5353–60. http://dx.doi.org/10.1128/aem.00626-12.
Pełny tekst źródłaStepanenko, L. A., Yu P. Dzhioev, V. I. Zlobin, A. Yu Borisenko, V. P. Salovarova, N. A. Arefieva, I. Zh Seminsky i I. V. Malov. "Development of screening approaches of highly specific bacteriophages based on bioinformatic analysis of CRISPR-Cas structures of Corynebacterium diphtheriae systems". Proceedings of Universities. Applied Chemistry and Biotechnology 11, nr 2 (4.07.2021): 216–27. http://dx.doi.org/10.21285/2227-2925-2021-11-2-216-227.
Pełny tekst źródłaMcKitterick, Amelia C., Kristen N. LeGault, Angus Angermeyer, Munirul Alam i Kimberley D. Seed. "Competition between mobile genetic elements drives optimization of a phage-encoded CRISPR-Cas system: insights from a natural arms race". Philosophical Transactions of the Royal Society B: Biological Sciences 374, nr 1772 (25.03.2019): 20180089. http://dx.doi.org/10.1098/rstb.2018.0089.
Pełny tekst źródłaSemenova, Ekaterina, Ekaterina Savitskaya, Olga Musharova, Alexandra Strotskaya, Daria Vorontsova, Kirill A. Datsenko, Maria D. Logacheva i Konstantin Severinov. "Highly efficient primed spacer acquisition from targets destroyed by the Escherichia coli type I-E CRISPR-Cas interfering complex". Proceedings of the National Academy of Sciences 113, nr 27 (20.06.2016): 7626–31. http://dx.doi.org/10.1073/pnas.1602639113.
Pełny tekst źródłaStepanenko, L. A., B. G. Sukhov, V. V. Bedinskaya, A. Yu Borisenko i T. V. Kon’kova. "Developing approaches for search and analysis of CRISPR-Cas systems on the example of <i>Klebsiella pneumoniae</i> strains as a basis for creating personalized bacteriophage therapy". Proceedings of Universities. Applied Chemistry and Biotechnology 13, nr 2 (2.07.2023): 197–205. http://dx.doi.org/10.21285/2227-2925-2023-13-2-197-205.
Pełny tekst źródłaManiv, Inbal, Wenyan Jiang, David Bikard i Luciano A. Marraffini. "Impact of Different Target Sequences on Type III CRISPR-Cas Immunity". Journal of Bacteriology 198, nr 6 (11.01.2016): 941–50. http://dx.doi.org/10.1128/jb.00897-15.
Pełny tekst źródłaNussenzweig, Philip M., i Luciano A. Marraffini. "Molecular Mechanisms of CRISPR-Cas Immunity in Bacteria". Annual Review of Genetics 54, nr 1 (23.11.2020): 93–120. http://dx.doi.org/10.1146/annurev-genet-022120-112523.
Pełny tekst źródłaKuno, Sotaro, Yoshihiko Sako i Takashi Yoshida. "Diversification of CRISPR within coexisting genotypes in a natural population of the bloom-forming cyanobacterium Microcystis aeruginosa". Microbiology 160, nr 5 (1.05.2014): 903–16. http://dx.doi.org/10.1099/mic.0.073494-0.
Pełny tekst źródłaShiriaeva, Anna, Ivan Fedorov, Danylo Vyhovskyi i Konstantin Severinov. "Detection of CRISPR adaptation". Biochemical Society Transactions 48, nr 1 (3.02.2020): 257–69. http://dx.doi.org/10.1042/bst20190662.
Pełny tekst źródłaGonzález-Delgado, Alejandro, Mario Rodríguez Mestre, Francisco Martínez-Abarca i Nicolás Toro. "Spacer acquisition from RNA mediated by a natural reverse transcriptase-Cas1 fusion protein associated with a type III-D CRISPR–Cas system in Vibrio vulnificus". Nucleic Acids Research 47, nr 19 (4.09.2019): 10202–11. http://dx.doi.org/10.1093/nar/gkz746.
Pełny tekst źródłaHsu, Jen-Fu, Jang-Jih Lu, Chih Lin, Shih-Ming Chu, Lee-Chung Lin, Mei-Yin Lai, Hsuan-Rong Huang, Ming-Chou Chiang i Ming-Horng Tsai. "Clustered Regularly Interspaced Short Palindromic Repeat Analysis of Clonal Complex 17 Serotype III Group B Streptococcus Strains Causing Neonatal Invasive Diseases". International Journal of Molecular Sciences 22, nr 21 (27.10.2021): 11626. http://dx.doi.org/10.3390/ijms222111626.
Pełny tekst źródłaKurilovich, Elena, Anna Shiriaeva, Anastasia Metlitskaya, Natalia Morozova, Ivana Ivancic-Bace, Konstantin Severinov i Ekaterina Savitskaya. "Genome Maintenance Proteins Modulate Autoimmunity Mediated Primed Adaptation by the Escherichia coli Type I-E CRISPR-Cas System". Genes 10, nr 11 (31.10.2019): 872. http://dx.doi.org/10.3390/genes10110872.
Pełny tekst źródłaMoller, Abraham G., i Chun Liang. "MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes". PeerJ 5 (7.09.2017): e3788. http://dx.doi.org/10.7717/peerj.3788.
Pełny tekst źródłaPourcel, C., G. Salvignol i G. Vergnaud. "CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies". Microbiology 151, nr 3 (1.03.2005): 653–63. http://dx.doi.org/10.1099/mic.0.27437-0.
Pełny tekst źródłaAviram, Naama, Ashley N. Thornal, David Zeevi i Luciano A. Marraffini. "Different modes of spacer acquisition by the Staphylococcus epidermidis type III-A CRISPR-Cas system". Nucleic Acids Research 50, nr 3 (20.01.2022): 1661–72. http://dx.doi.org/10.1093/nar/gkab1299.
Pełny tekst źródłaGarrett, Sandra, Masami Shiimori, Elizabeth A. Watts, Landon Clark, Brenton R. Graveley i Michael P. Terns. "Primed CRISPR DNA uptake in Pyrococcus furiosus". Nucleic Acids Research 48, nr 11 (18.05.2020): 6120–35. http://dx.doi.org/10.1093/nar/gkaa381.
Pełny tekst źródłaBedinskaya, V. V., L. A. Stepanenko, E. V. Simonova, A. G. Atlas, E. B. Rakova i V. I. Zlobin. "Characterization of CRISPR/CAS System in Pseudomonas aeruginosa DSM 50071 Based on Bioinformatic Analysis of its Structures". Bulletin of Irkutsk State University. Series Biology. Ecology 40 (2022): 3–14. http://dx.doi.org/10.26516/2073-3372.2022.40.3.
Pełny tekst źródłaBorisenko, A. Yu, N. A. Arefieva, Yu P. Dzhioev, S. V. Erdyneev, Yu S. Bukin, G. A. Teterina, A. A. Pristavka i in. "In Silico Analysis of the Structural Diversity of CRISPR-Cas Systems in Genomes of Salmonella enterica and Phage Species Detected by Them". Bulletin of Irkutsk State University. Series Biology. Ecology 45 (2023): 3–20. http://dx.doi.org/10.26516/2073-3372.2023.45.3.
Pełny tekst źródłaBonsma-Fisher, Madeleine, Dominique Soutière i Sidhartha Goyal. "How adaptive immunity constrains the composition and fate of large bacterial populations". Proceedings of the National Academy of Sciences 115, nr 32 (23.07.2018): E7462—E7468. http://dx.doi.org/10.1073/pnas.1802887115.
Pełny tekst źródłaSorokin, Valery A., Mikhail S. Gelfand i Irena I. Artamonova. "Evolutionary Dynamics of Clustered Irregularly Interspaced Short Palindromic Repeat Systems in the Ocean Metagenome". Applied and Environmental Microbiology 76, nr 7 (29.01.2010): 2136–44. http://dx.doi.org/10.1128/aem.01985-09.
Pełny tekst źródłaDeecker, Shayna R., i Alexander W. Ensminger. "Type I-F CRISPR-Cas Distribution and Array Dynamics in Legionella pneumophila". G3: Genes|Genomes|Genetics 10, nr 3 (14.01.2020): 1039–50. http://dx.doi.org/10.1534/g3.119.400813.
Pełny tekst źródłaBozic, Bojan, Jelena Repac i Marko Djordjevic. "Endogenous Gene Regulation as a Predicted Main Function of Type I-E CRISPR/Cas System in E. coli". Molecules 24, nr 4 (21.02.2019): 784. http://dx.doi.org/10.3390/molecules24040784.
Pełny tekst źródłaArtamonova, Daria, Karyna Karneyeva, Sofia Medvedeva, Evgeny Klimuk, Matvey Kolesnik, Anna Yasinskaya, Aleksei Samolygo i Konstantin Severinov. "Spacer acquisition by Type III CRISPR–Cas system during bacteriophage infection of Thermus thermophilus". Nucleic Acids Research 48, nr 17 (21.08.2020): 9787–803. http://dx.doi.org/10.1093/nar/gkaa685.
Pełny tekst źródłaTanmoy, Arif Mohammad, Chinmoy Saha, Mohammad Saiful Islam Sajib, Senjuti Saha, Florence Komurian-Pradel, Alex van Belkum, Rogier Louwen, Samir Kumar Saha i Hubert P. Endtz. "CRISPR-Cas Diversity in Clinical Salmonella enterica Serovar Typhi Isolates from South Asian Countries". Genes 11, nr 11 (18.11.2020): 1365. http://dx.doi.org/10.3390/genes11111365.
Pełny tekst źródłaStamereilers, Casey, Simon Wong i Philippos K. Tsourkas. "Characterization of CRISPR Spacer and Protospacer Sequences in Paenibacillus larvae and Its Bacteriophages". Viruses 13, nr 3 (11.03.2021): 459. http://dx.doi.org/10.3390/v13030459.
Pełny tekst źródłaNobrega, Franklin L., Hielke Walinga, Bas E. Dutilh i Stan J. J. Brouns. "Prophages are associated with extensive CRISPR–Cas auto-immunity". Nucleic Acids Research 48, nr 21 (21.11.2020): 12074–84. http://dx.doi.org/10.1093/nar/gkaa1071.
Pełny tekst źródłaHeussler, Gary E., i George A. O'Toole. "Friendly Fire: Biological Functions and Consequences of Chromosomal Targeting by CRISPR-Cas Systems". Journal of Bacteriology 198, nr 10 (29.02.2016): 1481–86. http://dx.doi.org/10.1128/jb.00086-16.
Pełny tekst źródłaWang, Kai, i Chun Liang. "CRF: detection of CRISPR arrays using random forest". PeerJ 5 (25.04.2017): e3219. http://dx.doi.org/10.7717/peerj.3219.
Pełny tekst źródłaChaturvedi, Sarika, i Jinny Tomar. "CRISPR/CAS 9 Mediated Treatment for UTIs". International Journal for Modern Trends in Science and Technology 6, nr 5 (31.05.2020): 82–94. http://dx.doi.org/10.46501/ijmtst060515.
Pełny tekst źródłaCady, K. C., A. S. White, J. H. Hammond, M. D. Abendroth, R. S. G. Karthikeyan, P. Lalitha, M. E. Zegans i G. A. O'Toole. "Prevalence, conservation and functional analysis of Yersinia and Escherichia CRISPR regions in clinical Pseudomonas aeruginosa isolates". Microbiology 157, nr 2 (1.02.2011): 430–37. http://dx.doi.org/10.1099/mic.0.045732-0.
Pełny tekst źródłaGrainy, Julie, Sandra Garrett, Brenton R. Graveley i Michael P. Terns. "CRISPR repeat sequences and relative spacing specify DNA integration by Pyrococcus furiosus Cas1 and Cas2". Nucleic Acids Research 47, nr 14 (20.06.2019): 7518–31. http://dx.doi.org/10.1093/nar/gkz548.
Pełny tekst źródłaRezzonico, Fabio, Theo H. M. Smits i Brion Duffy. "Diversity, Evolution, and Functionality of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Regions in the Fire Blight Pathogen Erwinia amylovora". Applied and Environmental Microbiology 77, nr 11 (1.04.2011): 3819–29. http://dx.doi.org/10.1128/aem.00177-11.
Pełny tekst źródłaZhang, Xinfu, Sandra Garrett, Brenton R. Graveley i Michael P. Terns. "Unique properties of spacer acquisition by the type III-A CRISPR-Cas system". Nucleic Acids Research 50, nr 3 (10.12.2021): 1562–82. http://dx.doi.org/10.1093/nar/gkab1193.
Pełny tekst źródłaKim, Jenny G., Sandra Garrett, Yunzhou Wei, Brenton R. Graveley i Michael P. Terns. "CRISPR DNA elements controlling site-specific spacer integration and proper repeat length by a Type II CRISPR–Cas system". Nucleic Acids Research 47, nr 16 (8.08.2019): 8632–48. http://dx.doi.org/10.1093/nar/gkz677.
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