Artykuły w czasopismach na temat „Conformational clustering”
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Roither, Bernhard, Chris Oostenbrink, Georg Pfeiler, Heinz Koelbl i Wolfgang Schreiner. "Pembrolizumab Induces an Unexpected Conformational Change in the CC′-loop of PD-1". Cancers 13, nr 1 (22.12.2020): 5. http://dx.doi.org/10.3390/cancers13010005.
Pełny tekst źródłaConklin, D., S. Fortier, J. I. Glasgow i F. H. Allen. "Conformational analysis from crystallographic data using conceptual clustering". Acta Crystallographica Section B Structural Science 52, nr 3 (1.06.1996): 535–49. http://dx.doi.org/10.1107/s010876819501696x.
Pełny tekst źródłaCollins, A., A. Parkin, G. Barr, W. Dong, C. J. Gilmore i C. C. Wilson. "Configurational and conformational classification of pyranose sugars". Acta Crystallographica Section B Structural Science 64, nr 1 (17.01.2008): 57–65. http://dx.doi.org/10.1107/s0108768107067341.
Pełny tekst źródłaHuang, Shupei, Haizhong An, Xiangyun Gao, Xiaoqing Hao i Xuan Huang. "The Multiscale Conformation Evolution of the Financial Time Series". Mathematical Problems in Engineering 2015 (2015): 1–9. http://dx.doi.org/10.1155/2015/563145.
Pełny tekst źródłaJoshi, Arpita, Nurit Haspel i Eduardo González. "Characterizing Protein Conformational Spaces using Efficient Data Reduction and Algebraic Topology". Journal of Human, Earth, and Future 3 (31.05.2022): 1–21. http://dx.doi.org/10.28991/hef-sp2022-01-01.
Pełny tekst źródłaPérez, J., K. Nolsøe, M. Kessler, L. García, E. Pérez i J. L. Serrano. "Bayesian methods for the conformational classification of eight-membered rings". Acta Crystallographica Section B Structural Science 61, nr 5 (23.09.2005): 585–94. http://dx.doi.org/10.1107/s0108768105023931.
Pełny tekst źródłaDobrovolska, Olena, Øyvind Strømland, Ørjan Sele Handegård, Martin Jakubec, Morten L. Govasli, Åge Aleksander Skjevik, Nils Åge Frøystein, Knut Teigen i Øyvind Halskau. "Investigating the Disordered and Membrane-Active Peptide A-Cage-C Using Conformational Ensembles". Molecules 26, nr 12 (12.06.2021): 3607. http://dx.doi.org/10.3390/molecules26123607.
Pełny tekst źródłaModi, Vivek, i Roland L. Dunbrack. "Defining a new nomenclature for the structures of active and inactive kinases". Proceedings of the National Academy of Sciences 116, nr 14 (13.03.2019): 6818–27. http://dx.doi.org/10.1073/pnas.1814279116.
Pełny tekst źródłaHumphries, M. J. "Monoclonal antibodies as probes of integrin priming and activation". Biochemical Society Transactions 32, nr 3 (1.06.2004): 407–11. http://dx.doi.org/10.1042/bst0320407.
Pełny tekst źródłaKessler, Mathieu, María C. Bueso i José Pérez. "Model-based conformational clustering of ring molecules". Journal of Chemometrics 21, nr 1-2 (styczeń 2007): 53–64. http://dx.doi.org/10.1002/cem.1035.
Pełny tekst źródłaBianchi, Greta, Marco Mangiagalli, Alberto Barbiroli, Sonia Longhi, Rita Grandori, Carlo Santambrogio i Stefania Brocca. "Distribution of Charged Residues Affects the Average Size and Shape of Intrinsically Disordered Proteins". Biomolecules 12, nr 4 (9.04.2022): 561. http://dx.doi.org/10.3390/biom12040561.
Pełny tekst źródłaWEN, BIN, YUNYU SHI i ZHIYONG ZHANG. "CLUSTERING MULTI-DOMAIN PROTEIN STRUCTURES IN THE ESSENTIAL DYNAMICS SUBSPACE". Journal of Theoretical and Computational Chemistry 12, nr 08 (grudzień 2013): 1341008. http://dx.doi.org/10.1142/s0219633613410083.
Pełny tekst źródłaDluhy, R. A., D. Moffatt, D. G. Cameron, R. Mendelsohn i H. H. Mantsch. "Characterization of cooperative conformational transitions by Fourier transform infrared spectroscopy: application to phospholipid binary mixtures". Canadian Journal of Chemistry 63, nr 7 (1.07.1985): 1925–32. http://dx.doi.org/10.1139/v85-319.
Pełny tekst źródłaMana, Giulia, Donatella Valdembri, Janet A. Askari, Zhenhai Li, Patrick Caswell, Cheng Zhu, Martin J. Humphries, Christoph Ballestrem i Guido Serini. "The βI domain promotes active β1 integrin clustering into mature adhesion sites". Life Science Alliance 6, nr 2 (21.11.2022): e202201388. http://dx.doi.org/10.26508/lsa.202201388.
Pełny tekst źródłaModi, Vivek, i Roland L. Dunbrack. "Kincore: a web resource for structural classification of protein kinases and their inhibitors". Nucleic Acids Research 50, nr D1 (13.10.2021): D654—D664. http://dx.doi.org/10.1093/nar/gkab920.
Pełny tekst źródłaKim, Irene S., Simon Jenni, Megan L. Stanifer, Eatai Roth, Sean P. J. Whelan, Antoine M. van Oijen i Stephen C. Harrison. "Mechanism of membrane fusion induced by vesicular stomatitis virus G protein". Proceedings of the National Academy of Sciences 114, nr 1 (14.12.2016): E28—E36. http://dx.doi.org/10.1073/pnas.1618883114.
Pełny tekst źródłaDAMJANOVICH, S., R. GÁSPÁR, Jr. i C. PIERI. "Dynamic receptor superstructures at the plasma membrane". Quarterly Reviews of Biophysics 30, nr 1 (luty 1997): 67–106. http://dx.doi.org/10.1017/s0033583596003307.
Pełny tekst źródłaZok, Tomasz, Maciej Antczak, Martin Riedel, David Nebel, Thomas Villmann, Piotr Lukasiak, Jacek Blazewicz i Marta Szachniuk. "Building the library of RNA 3D nucleotide conformations using the clustering approach". International Journal of Applied Mathematics and Computer Science 25, nr 3 (1.09.2015): 689–700. http://dx.doi.org/10.1515/amcs-2015-0050.
Pełny tekst źródłaSteuer, Jakob, Oleksandra Kukharenko, Kai Riedmiller, Jörg S. Hartig i Christine Peter. "Guanidine-II aptamer conformations and ligand binding modes through the lens of molecular simulation". Nucleic Acids Research 49, nr 14 (7.07.2021): 7954–65. http://dx.doi.org/10.1093/nar/gkab592.
Pełny tekst źródłaPolêto, Marcelo D., Bruno I. Grisci, Marcio Dorn i Hugo Verli. "ConfID: an analytical method for conformational characterization of small molecules using molecular dynamics trajectories". Bioinformatics 36, nr 11 (27.02.2020): 3576–77. http://dx.doi.org/10.1093/bioinformatics/btaa130.
Pełny tekst źródłaAdasme-Carreño, Francisco, Camila Muñoz-Gutierrez, Julio Caballero i Jans H. Alzate-Morales. "Performance of the MM/GBSA scoring using a binding site hydrogen bond network-based frame selection: the protein kinase case". Phys. Chem. Chem. Phys. 16, nr 27 (2014): 14047–58. http://dx.doi.org/10.1039/c4cp01378f.
Pełny tekst źródłaKobayashi, Masamichi, i Takehito Kozasa. "Conformational Ordering Process on Physical Gelation of Syndiotactic Polystyrene/Solvent Systems Revealed by Time-Resolved Infrared Spectroscopy". Applied Spectroscopy 47, nr 9 (wrzesień 1993): 1417–24. http://dx.doi.org/10.1366/0003702934067450.
Pełny tekst źródłaHato, Takaaki, Nisar Pampori i Sanford J. Shattil. "Complementary Roles for Receptor Clustering and Conformational Change in the Adhesive and Signaling Functions of Integrin αIIbβ3". Journal of Cell Biology 141, nr 7 (29.06.1998): 1685–95. http://dx.doi.org/10.1083/jcb.141.7.1685.
Pełny tekst źródłaCollins, Anna, Gordon Barr, Wei Dong, Christopher J. Gilmore, Derek S. Middlemiss, Andrew Parkin i Chick C. Wilson. "The application of cluster analysis to identify conformational preferences in enones and enimines from crystal structural data". Acta Crystallographica Section B Structural Science 63, nr 3 (16.05.2007): 469–76. http://dx.doi.org/10.1107/s0108768107006969.
Pełny tekst źródłaKim, Minsoo, Christopher V. Carman, Wei Yang, Azucena Salas i Timothy A. Springer. "The primacy of affinity over clustering in regulation of adhesiveness of the integrin αLβ2". Journal of Cell Biology 167, nr 6 (20.12.2004): 1241–53. http://dx.doi.org/10.1083/jcb.200404160.
Pełny tekst źródłaRaithby, P. R., G. P. Shields i F. H. Allen. "Conformational Analysis of Macrocyclic Ether Ligands. I. 1,4,7,10-Tetraoxacyclododecane and 1,4,7,10-Tetrathiacyclododecane". Acta Crystallographica Section B Structural Science 53, nr 2 (1.04.1997): 241–51. http://dx.doi.org/10.1107/s0108768196013663.
Pełny tekst źródłaTedeschi, Giulia, Edoardo Salladini, Carlo Santambrogio, Rita Grandori, Sonia Longhi i Stefania Brocca. "Conformational response to charge clustering in synthetic intrinsically disordered proteins". Biochimica et Biophysica Acta (BBA) - General Subjects 1862, nr 10 (październik 2018): 2204–14. http://dx.doi.org/10.1016/j.bbagen.2018.07.011.
Pełny tekst źródłaBoutonnet, Nathalie S., Marianne J. Rooman i Shoshana J. Wodak. "Automatic Analysis of Protein Conformational Changes by Multiple Linkage Clustering". Journal of Molecular Biology 253, nr 4 (listopad 1995): 633–47. http://dx.doi.org/10.1006/jmbi.1995.0578.
Pełny tekst źródłaComrie, William A., Alexander Babich i Janis K. Burkhardt. "F-actin flow drives affinity maturation and spatial organization of LFA-1 at the immunological synapse". Journal of Cell Biology 208, nr 4 (9.02.2015): 475–91. http://dx.doi.org/10.1083/jcb.201406121.
Pełny tekst źródłaFolkertsma, Simon, Paula I. van Noort, Arnold de Heer, Peter Carati, Ralph Brandt, Arie Visser, Gerrit Vriend i Jacob de Vlieg. "The Use of in Vitro Peptide Binding Profiles and in Silico Ligand-Receptor Interaction Profiles to Describe Ligand-Induced Conformations of the Retinoid X Receptor α Ligand-Binding Domain". Molecular Endocrinology 21, nr 1 (1.01.2007): 30–48. http://dx.doi.org/10.1210/me.2006-0072.
Pełny tekst źródłaNikoloudis, Dimitris, Jim E. Pitts i José W. Saldanha. "A complete, multi-level conformational clustering of antibody complementarity-determining regions". PeerJ 2 (1.07.2014): e456. http://dx.doi.org/10.7717/peerj.456.
Pełny tekst źródłaMarinova, Veselina, Laurence Dodd, Song-Jun Lee, Geoffrey P. F. Wood, Ivan Marziano i Matteo Salvalaglio. "Identifying Conformational Isomers of Organic Molecules in Solution via Unsupervised Clustering". Journal of Chemical Information and Modeling 61, nr 5 (29.04.2021): 2263–73. http://dx.doi.org/10.1021/acs.jcim.0c01387.
Pełny tekst źródłaSittel, Florian, i Gerhard Stock. "Robust Density-Based Clustering To Identify Metastable Conformational States of Proteins". Journal of Chemical Theory and Computation 12, nr 5 (21.04.2016): 2426–35. http://dx.doi.org/10.1021/acs.jctc.5b01233.
Pełny tekst źródłaKlyshko, Eugene, i Sarah Rauscher. "Defining Conformational States of Proteins using Dimensionality Reduction and Clustering Algorithms". Biophysical Journal 116, nr 3 (luty 2019): 290a. http://dx.doi.org/10.1016/j.bpj.2018.11.1564.
Pełny tekst źródłaSolihah, Binti, Aina Musdholifah i Azhari Azhari. "A Novel Epitope Dataset: Performance of the MCL-Based Algorithms to Generate Dataset for Graph Learning Model". Engineering Innovations 4 (15.02.2023): 37–46. http://dx.doi.org/10.4028/p-8a27xd.
Pełny tekst źródłaTu, Sidong, Chandan K. Choudhury, Michaela Giltner, Igor Luzinov i Olga Kuksenok. "Mesoscale Modeling of Agglomeration of Molecular Bottlebrushes: Focus on Conformations and Clustering Criteria". Polymers 14, nr 12 (9.06.2022): 2339. http://dx.doi.org/10.3390/polym14122339.
Pełny tekst źródłaJiang, Hangjin, i Xiaodan Fan. "The Two-Step Clustering Approach for Metastable States Learning". International Journal of Molecular Sciences 22, nr 12 (19.06.2021): 6576. http://dx.doi.org/10.3390/ijms22126576.
Pełny tekst źródłaHuang, Zhaohong, Xinyue Cui, Yuhao Xia, Kailong Zhao i Guijun Zhang. "Pathfinder: Protein folding pathway prediction based on conformational sampling". PLOS Computational Biology 19, nr 9 (11.09.2023): e1011438. http://dx.doi.org/10.1371/journal.pcbi.1011438.
Pełny tekst źródłaDas, Swagata, Supriya Das, Anupam Roy, Uttam Pal i Nakul C. Maiti. "Orientation of tyrosine side chain in neurotoxic Aβ differs in two different secondary structures of the peptide". Royal Society Open Science 3, nr 10 (październik 2016): 160112. http://dx.doi.org/10.1098/rsos.160112.
Pełny tekst źródłaKolloff, Christopher, Adam Mazur, Jan K. Marzinek, Peter J. Bond, Simon Olsson i Sebastian Hiller. "Motional clustering in supra-τc conformational exchange influences NOE cross-relaxation rate". Journal of Magnetic Resonance 338 (maj 2022): 107196. http://dx.doi.org/10.1016/j.jmr.2022.107196.
Pełny tekst źródłaAllen, F. H., i S. Fortier. "Stereochemical and conformational classification of the hexopyranose sugars using numerical clustering methods". Acta Crystallographica Section B Structural Science 49, nr 6 (1.12.1993): 1021–31. http://dx.doi.org/10.1107/s0108768193008353.
Pełny tekst źródłaBouchoux, Guy, Sylvie Jezequel i Florence Penaud-Berruyer. "Conformational effect on gas-phase protonation and NH4+ clustering of 1,2-diols". Organic Mass Spectrometry 28, nr 4 (kwiecień 1993): 421–27. http://dx.doi.org/10.1002/oms.1210280426.
Pełny tekst źródłaAsses, Yasmine, Vishwesh Venkatraman, Vincent Leroux, David W. Ritchie i Bernard Maigret. "Exploring c-Met kinase flexibility by sampling and clustering its conformational space". Proteins: Structure, Function, and Bioinformatics 80, nr 4 (24.01.2012): 1227–38. http://dx.doi.org/10.1002/prot.24021.
Pełny tekst źródłaZuffo, Michela, Aurélie Gandolfini, Brahim Heddi i Anton Granzhan. "Harnessing intrinsic fluorescence for typing of secondary structures of DNA". Nucleic Acids Research 48, nr 11 (20.04.2020): e61-e61. http://dx.doi.org/10.1093/nar/gkaa257.
Pełny tekst źródłaAllen, F. H., i R. Taylor. "Automated conformational analysis from crystallographic data. 5. Recognition of special positions in conformational space in symmetry-modified clustering algorithms". Acta Crystallographica Section B Structural Science 47, nr 3 (1.06.1991): 404–12. http://dx.doi.org/10.1107/s0108768190014094.
Pełny tekst źródłaBonilla, Steve L., Sarah K. Denny, John H. Shin, Aurora Alvarez-Buylla, William J. Greenleaf i Daniel Herschlag. "High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs". Proceedings of the National Academy of Sciences 118, nr 33 (9.08.2021): e2109085118. http://dx.doi.org/10.1073/pnas.2109085118.
Pełny tekst źródłavan der Wal, Dianne, Sandra Verhoef, Roger Schutgens, Marjolein Peters, Yaping Wu i Jan Willem Akkerman. "Role of glycoprotein Ibα mobility in platelet function". Thrombosis and Haemostasis 103, nr 05 (2010): 1033–43. http://dx.doi.org/10.1160/th09-11-0751.
Pełny tekst źródłaMir, Sonia, Sajda Ashraf, Maria Saeed, Atta-ur Rahman i Zaheer Ul-Haq. "Protonation states at different pH, conformational changes and impact of glycosylation in synapsin Ia". Physical Chemistry Chemical Physics 23, nr 31 (2021): 16718–29. http://dx.doi.org/10.1039/d1cp00531f.
Pełny tekst źródłaBarszczewski, Marcin, John J. Chua, Alexander Stein, Ulrike Winter, Rainer Heintzmann, Felipe E. Zilly, Dirk Fasshauer, Thorsten Lang i Reinhard Jahn. "A Novel Site of Action for α-SNAP in the SNARE Conformational Cycle Controlling Membrane Fusion". Molecular Biology of the Cell 19, nr 3 (marzec 2008): 776–84. http://dx.doi.org/10.1091/mbc.e07-05-0498.
Pełny tekst źródłaYu, Tao, Xing Wu, Kiran B. Gupta i Dennis F. Kucik. "Affinity, lateral mobility, and clustering contribute independently to β2-integrin-mediated adhesion". American Journal of Physiology-Cell Physiology 299, nr 2 (sierpień 2010): C399—C410. http://dx.doi.org/10.1152/ajpcell.00039.2009.
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