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Gotowe bibliografie tematyczne / Comparative genomic hybridization / Artykuły w czasopismach

Artykuły w czasopismach na temat „Comparative genomic hybridization”

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Data publikacji: 4 czerwca 2021

Data aktualizacji: 20 lutego 2023

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1

Barrett, Irene J., Brenda L. Lomax, Tatiana Loukianova, Steven S. Tang, Valia S. Lestou i Dagmar K. Kalousek. "Comparative Genomic Hybridization". Archives of Pathology & Laboratory Medicine 125, nr 1 (1.01.2001): 81–84. http://dx.doi.org/10.5858/2001-125-0081-cgh.

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Abstract Objective.—To demonstrate the effectiveness of comparative genomic hybridization (CGH) for analysis of reproductive pathology specimens in clinical cytogenetics laboratories. Design.—A total of 856 CGH analyses were performed on various placental and fetal tissues derived from 368 specimens of spontaneous abortions and on placentas from 219 pregnancies with live-born infants. The live-born infants were clinically evaluated as normally developed, with either a normal birth weight or with intrauterine growth restriction; some live-born infants had an abnormal prenatal triple screen with normal cytogenetic results on amniotic fluid cell cultures. Results.—Comparative genomic hybridization analysis was successfully performed on 856 samples from spontaneously aborted specimens and term placentas. Failure of analysis occurred in 1.6% of samples and was due to an insufficient amount of tissue for DNA extraction. Comparative genomic hybridization identified aneuploidy in 53% of spontaneous abortion samples and 3.1% of term placentas. Conclusions.—Comparative genomic hybridization analysis is a useful clinical tool for detection of aneuploidy in placental and fetal tissues. It provides a genome-wide screen while eliminating tissue culture failures, culture artifacts, and maternal cell contamination. We present practical guidelines for interpreting CGH profiles derived from human reproductive specimens.

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2

Kellner, Udo, Anja Jacobsen, Angela Kellner, René Mantke, Albert Roessner i Christoph Röcken. "Comparative Genomic Hybridization". American Journal of Clinical Pathology 119, nr 2 (luty 2003): 265–71. http://dx.doi.org/10.1309/ef69vndlvpwve4qv.

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3

Pinkel, Daniel, i Donna G. Albertson. "COMPARATIVE GENOMIC HYBRIDIZATION". Annual Review of Genomics and Human Genetics 6, nr 1 (wrzesień 2005): 331–54. http://dx.doi.org/10.1146/annurev.genom.6.080604.162140.

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4

Pinkel, D., R. Segraves, D. Sudar, L. van Vliet, S. Clark, C. Chen, Y. Zhai, J. W. Gray i D. G. Albertson. "Comparative Genomic Hybridization to Dna Microarrays". Microscopy and Microanalysis 3, S2 (sierpień 1997): 205–6. http://dx.doi.org/10.1017/s1431927600007911.

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Comparative genomic hybridization (CGH), which involves the simultaneous hybridization of differentially labeled total genomic DNA from test cells and reference normal cells to metaphase chromosomes, has been used extensively to screen tumor genomes for regions of DNA sequence copy number variation. Analysis of these hybridizations requires quantitative analysis of the ratio of intensities of the fluorescent hybridization signals as a function of position along the chromosomes, which basically serve as a convenient genetic map. The ratios need to be measured very accurately since changes of about ± 20% from the average for the genome indicate important genetic events. Widespread use of CGH over the past several years has identified numerous regions of the genome that may contain currently unknown cancer genes. For example, regions of increased copy number may indicate sites of oncogenes, while regions of copy number decrease relative to average for the genome may signify the presence of a tumor suppressor gene.

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5

Fiorentino, Francesco. "Array comparative genomic hybridization". Current Opinion in Obstetrics and Gynecology 24, nr 4 (sierpień 2012): 203–9. http://dx.doi.org/10.1097/gco.0b013e328355854d.

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6

Done, Susan B. "Diagnostic Array Comparative Genomic Hybridization". Journal of Molecular Diagnostics 8, nr 5 (listopad 2006): 527. http://dx.doi.org/10.2353/jmoldx.2006.060152.

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7

Jeuken, Judith W. M., Sandra H. E. Sprenger i Pieter Wesseling. "Comparative Genomic Hybridization: Practical Guidelines". Diagnostic Molecular Pathology 11, nr 4 (grudzień 2002): 193–203. http://dx.doi.org/10.1097/00019606-200212000-00002.

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8

Toraman, Ahter Dilsad, Keser, Güven Lüleci, Nurdan Tunalı i Tekinalp Gelen. "Comparative genomic hybridization in ganglioneuroblastomas". Cancer Genetics and Cytogenetics 132, nr 1 (styczeń 2002): 36–40. http://dx.doi.org/10.1016/s0165-4608(01)00521-0.

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9

Koschny, Ronald, Thomas Koschny, Ursula G. Froster, Wolfgang Krupp i Margit A. Zuber. "Comparative genomic hybridization in glioma". Cancer Genetics and Cytogenetics 135, nr 2 (czerwiec 2002): 147–59. http://dx.doi.org/10.1016/s0165-4608(01)00650-1.

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10

Rienstein, Shlomit, Eric F. Adams, David Pilzer, Ayala Aviram Goldring, Boleslaw Goldman i Eitan Friedman. "Comparative genomic hybridization analysis of craniopharyngiomas". Journal of Neurosurgery 98, nr 1 (styczeń 2003): 162–64. http://dx.doi.org/10.3171/jns.2003.98.1.0162.

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Object. Craniopharyngioma is the most common childhood brain tumor and is thought to arise from embryonic remnants of the Rathke pouch. Some craniopharyngiomas are monoclonal in origin and hence presumably harbor somatic genetic alterations, although the precise molecular mechanisms involved in craniopharyngioma development are unknown. The goal of this study was to identify genetic alterations in craniopharyngiomas. Methods. To gain insight into the molecular mechanisms involved in development of these tumors, the authors analyzed nine adamantinomatous craniopharyngiomas by using comparative genomic hybridization. Six tumors (67%) displayed at least one genomic alteration, and three had six or more alterations. Only two tumors displayed a decrease in DNA copy number, and in all others an increase in DNA copy number was noted. Conclusions. The authors conclude that a subset of craniopharyngiomas consists of monoclonal tumors arising from activation of oncogenes located at specific chromosomal loci.

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11

Lee, M.-W., K.-J. Jee, S.-S. Han, G.-Y. Gong, J.-H. Choi, K.-C. Moon i J.-K. Koh. "Comparative genomic hybridization in epithelioid sarcoma". British Journal of Dermatology 151, nr 5 (listopad 2004): 1054–59. http://dx.doi.org/10.1111/j.1365-2133.2004.06246.x.

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12

Forozan, Farahnaz, Ritva Karhu, Juha Kononen, Anne Kallioniemi i Olli-P. Kallioniemi. "Genome screening by comparative genomic hybridization". Trends in Genetics 13, nr 10 (październik 1997): 405–9. http://dx.doi.org/10.1016/s0168-9525(97)01244-4.

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13

Khan, J., N. Z. Parsa, T. Harada, P. S. Meltzer i N. P. Carter. "Comparative genomic hybridization analysis of meningiomas". Cancer Genetics and Cytogenetics 98, nr 2 (październik 1997): 171. http://dx.doi.org/10.1016/s0165-4608(97)90325-3.

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14

Lichter, Peter, Stefan Joos, Martin Bentz i Stefan Lampel. "Comparative genomic hybridization: Uses and limitations". Seminars in Hematology 37, nr 4 (październik 2000): 348–57. http://dx.doi.org/10.1053/shem.2000.16594.

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15

Kallioniemi, Olli-P. "Comparative genomic hybridization gaining in popularity". Trends in Genetics 12, nr 6 (czerwiec 1996): 237–38. http://dx.doi.org/10.1016/0168-9525(96)81445-4.

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16

Lichter, Peter, Stefan Joos, Martin Bentz i Stefan Lampel. "Comparative genomic hybridization: Uses and limitations". Seminars in Hematology 37, nr 4 (październik 2000): 348–57. http://dx.doi.org/10.1016/s0037-1963(00)90015-5.

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17

Wiltshire, Rodney N., James E. Herndon, Annie Lloyd, Henry S. Friedman, Darell D. Bigner, Sandra H. Bigner i Roger E. McLendon. "Comparative Genomic Hybridization Analysis of Astrocytomas". Journal of Molecular Diagnostics 6, nr 3 (sierpień 2004): 166–79. http://dx.doi.org/10.1016/s1525-1578(10)60507-7.

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18

Baldocchi, R. A., R. J. Glynne, D. Kowbel, E. Tom, C. Collins, D. H. Mack i J. W. Gray. "Oligonucleotide-array–based comparative genomic hybridization". Nature Genetics 23, S3 (listopad 1999): 32. http://dx.doi.org/10.1038/14265.

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19

Van den Veyver, Ignatia B., i Arthur L. Beaudet. "Comparative genomic hybridization and prenatal diagnosis". Current Opinion in Obstetrics and Gynecology 18, nr 2 (kwiecień 2006): 185–91. http://dx.doi.org/10.1097/01.gco.0000192986.22718.cc.

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20

&NA;, &NA;. "Comparative genomic hybridization: a powerful tool". Advances in Anatomic Pathology 6, nr 1 (styczeń 1999): 59. http://dx.doi.org/10.1097/00125480-199901000-00013.

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21

Levy, Brynn, Teresa M. Dunn, Sara Kaffe, Nataline Kardon i Kurt Hirschhorn. "Clinical applications of comparative genomic hybridization". Genetics in Medicine 1, nr 1 (grudzień 1998): 4–12. http://dx.doi.org/10.1097/00125817-199811000-00004.

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22

Tarkkanen, Maija, Tom A. Wiklund, Martti J. Virolainen, Marcelo L. Larramendy, Nils Mandahl, Fredrik Mertens, Carl P. Blomqvist i in. "Comparative genomic hybridization of postirradiation sarcomas". Cancer 92, nr 7 (2001): 1992–98. http://dx.doi.org/10.1002/1097-0142(20011001)92:7<1992::aid-cncr1719>3.0.co;2-2.

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23

Hu, Jie, Marcia Wills, Barbara A. Baker i Elizabeth J. Perlman. "Comparative genomic hybridization analysis of hepatoblastomas". Genes, Chromosomes and Cancer 27, nr 2 (luty 2000): 196–201. http://dx.doi.org/10.1002/(sici)1098-2264(200002)27:2<196::aid-gcc12>3.0.co;2-d.

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24

du Manoir, Stanislas, Evelin Schröck, Martin Bentz, Michael R. Speicher, Stefan Joos, Thomas Ried, Peter Lichter i Thomas Cremer. "Quantitative analysis of comparative genomic hybridization". Cytometry 19, nr 1 (1.01.1995): 27–41. http://dx.doi.org/10.1002/cyto.990190105.

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25

Lundsteen, Claes, Jan Maahr, Britta Christensen, Thue Bryndorf, Martin Bentz, Peter Lichter i Tommy Gerdes. "Image analysis in comparative genomic hybridization". Cytometry 19, nr 1 (1.01.1995): 42–50. http://dx.doi.org/10.1002/cyto.990190106.

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26

Prescher, Gabriele, Michael R. Speicher, Stanislas du Manoir, Bernhard Horsthemke, Thomas Cremer i Reinhard Becher. "Comparative genomic hybridization of uveal melanoma". Cancer Genetics and Cytogenetics 77, nr 2 (październik 1994): 163. http://dx.doi.org/10.1016/0165-4608(94)90289-5.

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27

Tong, Carol Y. K., Angela B. Y. Hui, Xiao-Lu Yin, Jesse C. S. Pang, Xian-Lun Zhu, Wai-Sang Poon i Ho-Keung Ng. "Detection of oncogene amplifications in medulloblastomas by comparative genomic hybridization and array-based comparative genomic hybridization". Journal of Neurosurgery: Pediatrics 100, nr 2 (luty 2004): 187–93. http://dx.doi.org/10.3171/ped.2004.100.2.0187.

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28

Morrison, Carl. "Fluorescent In Situ Hybridization and Array Comparative Genomic Hybridization: Complementary Techniques for Genomic Evaluation". Archives of Pathology & Laboratory Medicine 130, nr 7 (1.07.2006): 967–74. http://dx.doi.org/10.5858/2006-130-967-fishaa.

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Abstract During the past few years a new high-throughput molecular technology, array comparative genomic hybridization, has received a great deal of attention. As a DNA-based tool, this technique is presumably more reproducible than expression arrays. In this review, I discuss how array comparative genomic hybridization is remarkably similar with regard to genome analysis to fluorescent in situ hybridization, a technique that is generally regarded as one of the more accurate and reproducible molecular techniques in diagnostic surgical pathology. A thorough understanding of this technology will be useful for all surgical pathologists in the near future, as this technology will no doubt have some influence on our daily practice.

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29

Eribo, Broderick, Sirima Mingmongkolchai, Tingfen Yan, Padunsri Dubbs i Karen E. Nelson. "Leptospire Genomic Diversity Revealed by Microarray-Based Comparative Genomic Hybridization". Applied and Environmental Microbiology 78, nr 9 (17.02.2012): 3045–50. http://dx.doi.org/10.1128/aem.07465-11.

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ABSTRACTComparative genomic hybridization was used to compare genetic diversity of five strains ofLeptospira(Leptospira interrogansserovars Bratislava, Canicola, and Hebdomadis andLeptospira kirschneriserovars Cynopteri and Grippotyphosa). The array was designed based on two available sequencedLeptospirareference genomes, those ofL. interrogansserovar Copenhageni andL. interrogansserovar Lai. A comparison of genetic contents showed thatL. interrogansserovar Bratislava was closest to the reference genomes whileL. kirschneriserovar Grippotyphosa had the least similarity to the reference genomes. Cluster analysis indicated thatL. interrogansserovars Bratislava and Hebdomadis clustered together first, followed byL. interrogansserovar Canicola, before the twoL. kirschneristrains. Confirmed/potential virulence factors identified in previous research were also detected in the tested strains.

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30

Halilović-Alihodžić, Mervisa. "Comparative genomic hybridization (CGH) in molecular diagnostics". Bioengineering Studies 2, nr 2 (1.09.2021): 37–41. http://dx.doi.org/10.37868/bes.v2i2.id194.

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Comparative genomic hybridization (CGH) is a powerful molecular cytogenetic approach for identifying chromosomal abnormalities. CGH allows researchers to scan whole genomes for changes in DNA copy numbers. Starting in 2004, the array CGH became an irreplaceable method for the detection of gene mutations in people with congenital and developmental abnormalities, such as intellectual disability, dysmorphic characteristics, developmental delay, or several congenital deformities without an obvious syndrome pattern. This review focuses on the evolution of array CGH technology and its use in molecular diagnostics and its advantages over older cytogenetic tools. This review further highlights special arrays developed in the past decade which detect small intragenic copy number changes as well as large DNA segments for the region of heterozygosity.

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31

Fishel, Simon, i Colleen Lynch. "Can comparative genomic hybridization improvein vitrofertilization outcomes?" Expert Review of Obstetrics & Gynecology 3, nr 1 (styczeń 2008): 51–58. http://dx.doi.org/10.1586/17474108.3.1.51.

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32

Stouffs, K., D. Vandermaelen, A. Massart, B. Menten, S. Vergult, H. Tournaye i W. Lissens. "Array comparative genomic hybridization in male infertility". Human Reproduction 27, nr 3 (11.01.2012): 921–29. http://dx.doi.org/10.1093/humrep/der440.

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33

Chan, LW, KW Choy, TY Leung i TK Lau. "Prenatal diagnosis by array-comparative genomic hybridization". Expert Opinion on Medical Diagnostics 3, nr 6 (27.08.2009): 649–57. http://dx.doi.org/10.1517/17530050903222247.

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34

Elias, Sherman. "Preimplantation Genetic Diagnosis by Comparative Genomic Hybridization". New England Journal of Medicine 345, nr 21 (22.11.2001): 1569–71. http://dx.doi.org/10.1056/nejm200111223452112.

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35

Lee, M.-W., K.-J. Jee, G.-Y. Gong, J.-H. Choi, K.-C. Moon i J.-K. Koh. "Comparative genomic hybridization in extramammary Paget's disease". British Journal of Dermatology 153, nr 2 (sierpień 2005): 290–94. http://dx.doi.org/10.1111/j.1365-2133.2005.06589.x.

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36

Steenman, M., B. Redeker, M. deMeulemeester, K. Wiesmeijer, P. A. Voûte, A. Westerveld, R. Slater i M. Mannens. "Comparative genomic hybridization analysis of Wilms tumors". Cytogenetic and Genome Research 77, nr 3-4 (1997): 296–303. http://dx.doi.org/10.1159/000134602.

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37

Wilton, Leeanda, Lucille Voullaire, Peta Sargent, Robert Williamson i John McBain. "Preimplantation embryo screening using comparative genomic hybridization". Fertility and Sterility 80, nr 4 (październik 2003): 875. http://dx.doi.org/10.1016/s0015-0282(03)01166-x.

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38

Appanna, Timson C., Shareen H. Doak, Spencer A. Jenkins, Howard G. Kynaston, Timothy P. Stephenson i James M. Parry. "Comparative genomic hybridization (CGH) of augmentation cystoplasties". International Journal of Urology 14, nr 6 (czerwiec 2007): 539–44. http://dx.doi.org/10.1111/j.1442-2042.2006.01724.x.

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39

Sidhu, Stan, Deborah J. Marsh, George Theodosopoulos, Jeanette Philips, Christopher P. Bambach, Peter Campbell, Christopher J. Magarey i in. "Comparative Genomic Hybridization Analysis of Adrenocortical Tumors". Journal of Clinical Endocrinology & Metabolism 87, nr 7 (1.07.2002): 3467–74. http://dx.doi.org/10.1210/jcem.87.7.8697.

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Comparative genomic hybridization (CGH) is a molecular cytogenetic technique that allows the entire genome of a tumor to be surveyed for gains and losses of DNA copy sequences. A limited number of studies reporting the use of this technique in adult adrenocortical tumors have yielded conflicting results. In this study we performed CGH analysis on 13 malignant, 18 benign, and 1 tumor of indeterminate malignant potential with the aim of identifying genetic loci consistently implicated in the development and progression of adrenocortical tumors. Tissue samples from 32 patients with histologically proven adrenocortical tumors were available for CGH analysis. CGH changes were seen in all cancers, 11 of 18 (61%) adenomas, and the 1 tumor of indeterminate malignant potential. Of the adrenal cancers, the most common gains were seen on chromosomes 5 (46%), 12 (38%), 19 (31%), and 4 (31%). Losses were most frequently seen at 1p (62%), 17p (54%), 22 (38%), 2q (31%), and 11q (31%). Of the benign adenomas, the most common change was gain of 4q (22%). Mann-Whitney analysis showed a highly significant difference between the cancer group (mean changes, 7.6) and the adenoma group (mean changes, 1.1) for the number of observed CGH changes (P < 0.01). Logistic regression analysis showed that the number of CGH changes was highly predictive of tumor type (P < 0.01). This study has identified several chromosomal loci implicated in adrenocortical tumorigenesis. Activation of a protooncogene(s) on chromosome 4 may be an early event, with progression from adenoma to carcinoma involving activation of oncogenes on chromosomes 5 and 12 and inactivation of tumor suppressor genes on chromosome arms 1p and 17p.

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40

Llorente, J. "Comparative genomic hybridization of primary sinonasal adenocarcinomas". Otolaryngology - Head and Neck Surgery 129, nr 2 (sierpień 2003): P164—P165. http://dx.doi.org/10.1016/s0194-5998(03)00987-2.

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41

Didraga, M. A., E. H. van Beers, K. Brandwijk, S. A. Joosse, F. B. L. Hogervorst, L. F. A. Wessels, S. Verhoef, P. Devilee i P. M. Nederlof. "Comparative genomic hybridization of BRCAX breast tumors". Cancer Genetics and Cytogenetics 203, nr 1 (listopad 2010): 67. http://dx.doi.org/10.1016/j.cancergencyto.2010.07.052.

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42

Chien, Gary, Po Wing Yuen, Dora Kwong i Yok Lam Kwong. "Comparative genomic hybridization analysis of nasopharygeal carcinoma:". Cancer Genetics and Cytogenetics 126, nr 1 (kwiecień 2001): 63–67. http://dx.doi.org/10.1016/s0165-4608(00)00392-7.

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43

Struski, Stéphanie, Martine Doco-Fenzy i Pascale Cornillet-Lefebvre. "Compilation of published comparative genomic hybridization studies". Cancer Genetics and Cytogenetics 135, nr 1 (maj 2002): 63–90. http://dx.doi.org/10.1016/s0165-4608(01)00624-0.

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44

Steenman, M., M. de Meulemeester, C. Wiesmeijer, E. Redeker, A. Westerveld, P. Voûte, R. Slater i M. Mannens. "Comparative genomic hybridization analysis of wilms tumors". Cancer Genetics and Cytogenetics 91, nr 2 (październik 1996): 142. http://dx.doi.org/10.1016/s0165-4608(97)82579-4.

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45

Gunn, Shelly R., Ryan S. Robetorye i Mansoor S. Mohammed. "Comparative Genomic Hybridization Arrays in Clinical Pathology". Molecular Diagnosis & Therapy 11, nr 2 (marzec 2007): 73–77. http://dx.doi.org/10.1007/bf03256225.

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46

&NA;. "Comparative genomic hybridization and solitary fibrous tumors". Advances in Anatomic Pathology 5, nr 2 (marzec 1998): 127. http://dx.doi.org/10.1097/00125480-199803000-00051.

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47

Rozeman, Leida B., Karoly Szuhai, Yvonne M. Schrage, Carla Rosenberg, Hans J. Tanke, Antonie H. M. Taminiau, Anne Marie Cleton-Jansen, Judith V. M. G. Bovée i Pancras C. W. Hogendoorn. "Array-comparative genomic hybridization of central chondrosarcoma". Cancer 107, nr 2 (2006): 380–88. http://dx.doi.org/10.1002/cncr.22001.

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48

Rickert, Christian H., Ronald Simon, Markus Bergmann, Barbara Dockhorn-Dworniczak i Werner Paulus. "Comparative genomic hybridization in pineal parenchymal tumors". Genes, Chromosomes and Cancer 30, nr 1 (2000): 99–104. http://dx.doi.org/10.1002/1098-2264(2000)9999:9999<::aid-gcc1067>3.0.co;2-c.

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Rosenberg, C., T. Bakker Schut, M. C. Mostert, H. J. Tanke, A. K. Raap, J. W. Oosterhuis i L. H. J. Looijenga. "Comparative genomic hybridization in hypotriploid/hyperdiploid tumors". Cytometry 29, nr 2 (1.10.1997): 113–21. http://dx.doi.org/10.1002/(sici)1097-0320(19971001)29:2<113::aid-cyto3>3.0.co;2-e.

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50

Piper, Jim, Denis Rutovitz, Damir Sudar, Anne Kallioniemi, Olli-P. Kallioniemi, Frederic M. Waldman, Joe W. Gray i Dan Pinkel. "Computer image analysis of comparative genomic hybridization". Cytometry 19, nr 1 (1.01.1995): 10–26. http://dx.doi.org/10.1002/cyto.990190104.

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