Articoli di riviste sul tema "RNA flexibility"
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Hagerman, Paul J. "FLEXIBILITY OF RNA". Annual Review of Biophysics and Biomolecular Structure 26, n. 1 (giugno 1997): 139–56. http://dx.doi.org/10.1146/annurev.biophys.26.1.139.
Testo completoDarst, S. A., N. Opalka, P. Chacon, A. Polyakov, C. Richter, G. Zhang e W. Wriggers. "Conformational flexibility of bacterial RNA polymerase". Proceedings of the National Academy of Sciences 99, n. 7 (19 marzo 2002): 4296–301. http://dx.doi.org/10.1073/pnas.052054099.
Testo completoSutton, Julie, e Lois Pollack. "RNA Flexibility Depends on Structural Context". Biophysical Journal 108, n. 2 (gennaio 2015): 27a. http://dx.doi.org/10.1016/j.bpj.2014.11.174.
Testo completoWarden, Meghan S., Kai Cai, Gabriel Cornilescu, Jordan E. Burke, Komala Ponniah, Samuel E. Butcher e Steven M. Pascal. "Conformational flexibility in the enterovirus RNA replication platform". RNA 25, n. 3 (21 dicembre 2018): 376–87. http://dx.doi.org/10.1261/rna.069476.118.
Testo completoZhuo, Chen, Chengwei Zeng, Rui Yang, Haoquan Liu e Yunjie Zhao. "RPflex: A Coarse-Grained Network Model for RNA Pocket Flexibility Study". International Journal of Molecular Sciences 24, n. 6 (13 marzo 2023): 5497. http://dx.doi.org/10.3390/ijms24065497.
Testo completoHyeon, Changbong, Ruxandra I. Dima e D. Thirumalai. "Size, shape, and flexibility of RNA structures". Journal of Chemical Physics 125, n. 19 (21 novembre 2006): 194905. http://dx.doi.org/10.1063/1.2364190.
Testo completoKilburn, John D., Joon Ho Roh, Liang Guo, Robert M. Briber e Sarah A. Woodson. "RNA Flexibility and Folding in Crowded Solutions". Biophysical Journal 102, n. 3 (gennaio 2012): 644a. http://dx.doi.org/10.1016/j.bpj.2011.11.3506.
Testo completoRau, M., W. T. Stump e K. B. Hall. "Intrinsic flexibility of snRNA hairpin loops facilitates protein binding". RNA 18, n. 11 (25 settembre 2012): 1984–95. http://dx.doi.org/10.1261/rna.035006.112.
Testo completoFairman, Connor W., Andrew M. L. Lever e Julia C. Kenyon. "Evaluating RNA Structural Flexibility: Viruses Lead the Way". Viruses 13, n. 11 (22 ottobre 2021): 2130. http://dx.doi.org/10.3390/v13112130.
Testo completoHetzke, Thilo, Marc Vogel, Dnyaneshwar B. Gophane, Julia E. Weigand, Beatrix Suess, Snorri Th Sigurdsson e Thomas F. Prisner. "Influence of Mg2+ on the conformational flexibility of a tetracycline aptamer". RNA 25, n. 1 (18 ottobre 2018): 158–67. http://dx.doi.org/10.1261/rna.068684.118.
Testo completoBao, Lei, Xi Zhang, Lei Jin e Zhi-Jie Tan. "Flexibility of nucleic acids: From DNA to RNA". Chinese Physics B 25, n. 1 (gennaio 2016): 018703. http://dx.doi.org/10.1088/1674-1056/25/1/018703.
Testo completoFaustino, Ignacio, Alberto Pérez e Modesto Orozco. "Toward a Consensus View of Duplex RNA Flexibility". Biophysical Journal 99, n. 6 (settembre 2010): 1876–85. http://dx.doi.org/10.1016/j.bpj.2010.06.061.
Testo completoHohng, Sungchul, Timothy J. Wilson, Elliot Tan, Robert M. Clegg, David M. J. Lilley e Taekjip Ha. "Conformational Flexibility of Four-way Junctions in RNA". Journal of Molecular Biology 336, n. 1 (febbraio 2004): 69–79. http://dx.doi.org/10.1016/j.jmb.2003.12.014.
Testo completoDalluge, J. "Conformational flexibility in RNA: the role of dihydrouridine". Nucleic Acids Research 24, n. 6 (15 marzo 1996): 1073–79. http://dx.doi.org/10.1093/nar/24.6.1073.
Testo completoBonin, M. "Analysis of RNA flexibility by scanning force spectroscopy". Nucleic Acids Research 30, n. 16 (15 agosto 2002): 81e—81. http://dx.doi.org/10.1093/nar/gnf080.
Testo completoHaque, Farzin, Fengmei Pi, Zhengyi Zhao, Shanqing Gu, Haibo Hu, Hang Yu e Peixuan Guo. "RNA versatility, flexibility, and thermostability for practice in RNA nanotechnology and biomedical applications". Wiley Interdisciplinary Reviews: RNA 9, n. 1 (3 novembre 2017): e1452. http://dx.doi.org/10.1002/wrna.1452.
Testo completoFulle, Simone, e Holger Gohlke. "Analyzing the Flexibility of RNA Structures by Constraint Counting". Biophysical Journal 94, n. 11 (giugno 2008): 4202–19. http://dx.doi.org/10.1529/biophysj.107.113415.
Testo completoFernández-Tornero, Carlos, Bettina Böttcher, Umar Jan Rashid, Ulrich Steuerwald, Beate Flörchinger, Damien P. Devos, Doris Lindner e Christoph W. Müller. "Conformational flexibility of RNA polymerase III during transcriptional elongation". EMBO Journal 29, n. 22 (22 ottobre 2010): 3762–72. http://dx.doi.org/10.1038/emboj.2010.266.
Testo completoFulle, Simone, e Holger Gohlke. "Constraint counting on RNA structures: Linking flexibility and function". Methods 49, n. 2 (ottobre 2009): 181–88. http://dx.doi.org/10.1016/j.ymeth.2009.04.004.
Testo completoKasprzak, Wojciech, Eckart Bindewald, Tae-Jin Kim, Luc Jaeger e Bruce A. Shapiro. "Use of RNA structure flexibility data in nanostructure modeling". Methods 54, n. 2 (giugno 2011): 239–50. http://dx.doi.org/10.1016/j.ymeth.2010.12.010.
Testo completoBoerneke, Mark A., e Thomas Hermann. "Conformational flexibility of viral RNA switches studied by FRET". Methods 91 (dicembre 2015): 35–39. http://dx.doi.org/10.1016/j.ymeth.2015.09.013.
Testo completoSutton, Julie L., e Lois Pollack. "Tuning RNA Flexibility with Helix Length and Junction Sequence". Biophysical Journal 109, n. 12 (dicembre 2015): 2644–53. http://dx.doi.org/10.1016/j.bpj.2015.10.039.
Testo completoBadorrek, Christopher S., e Kevin M. Weeks. "RNA flexibility in the dimerization domain of a gamma retrovirus". Nature Chemical Biology 1, n. 2 (5 giugno 2005): 104–11. http://dx.doi.org/10.1038/nchembio712.
Testo completoPun, Chi Seng, Brandon Yung Sin Yong e Kelin Xia. "Weighted-persistent-homology-based machine learning for RNA flexibility analysis". PLOS ONE 15, n. 8 (21 agosto 2020): e0237747. http://dx.doi.org/10.1371/journal.pone.0237747.
Testo completoKostek, Seth A., Patricia Grob, Sacha De Carlo, J. Slaton Lipscomb, Florian Garczarek e Eva Nogales. "Molecular Architecture and Conformational Flexibility of Human RNA Polymerase II". Structure 14, n. 11 (novembre 2006): 1691–700. http://dx.doi.org/10.1016/j.str.2006.09.011.
Testo completoWilkinson, Thomas A., Lingyang Zhu, Weidong Hu e Yuan Chen. "Retention of Conformational Flexibility in HIV-1 Rev−RNA Complexes†". Biochemistry 43, n. 51 (dicembre 2004): 16153–60. http://dx.doi.org/10.1021/bi048409e.
Testo completoGabel, Frank, Die Wang, Dominique Madern, Anthony Sadler, Kwaku Dayie, Maryam Zamanian Daryoush, Dietmar Schwahn, Giuseppe Zaccai, Xavier Lee e Bryan R. G. Williams. "Dynamic Flexibility of Double-stranded RNA Activated PKR in Solution". Journal of Molecular Biology 359, n. 3 (giugno 2006): 610–23. http://dx.doi.org/10.1016/j.jmb.2006.03.049.
Testo completoNoy, Agnes, Alberto Pérez, Filip Lankas, F. Javier Luque e Modesto Orozco. "Relative Flexibility of DNA and RNA: a Molecular Dynamics Study". Journal of Molecular Biology 343, n. 3 (ottobre 2004): 627–38. http://dx.doi.org/10.1016/j.jmb.2004.07.048.
Testo completoShikanai, Toshiharu. "RNA editing in plants: Machinery and flexibility of site recognition". Biochimica et Biophysica Acta (BBA) - Bioenergetics 1847, n. 9 (settembre 2015): 779–85. http://dx.doi.org/10.1016/j.bbabio.2014.12.010.
Testo completoFeig, Michael, e Zachary F. Burton. "RNA polymerase II flexibility during translocation from normal mode analysis". Proteins: Structure, Function, and Bioinformatics 78, n. 2 (5 agosto 2009): 434–46. http://dx.doi.org/10.1002/prot.22560.
Testo completoMelidis, Lazaros, Iain B. Styles e Michael J. Hannon. "Targeting structural features of viral genomes with a nano-sized supramolecular drug". Chemical Science 12, n. 20 (2021): 7174–84. http://dx.doi.org/10.1039/d1sc00933h.
Testo completoHe, Jiahua, Huanyu Tao e Sheng-You Huang. "Protein-ensemble–RNA docking by efficient consideration of protein flexibility through homology models". Bioinformatics 35, n. 23 (14 maggio 2019): 4994–5002. http://dx.doi.org/10.1093/bioinformatics/btz388.
Testo completoChan, Clarence W., Deanna Badong, Rakhi Rajan e Alfonso Mondragón. "Crystal structures of an unmodified bacterial tRNA reveal intrinsic structural flexibility and plasticity as general properties of unbound tRNAs". RNA 26, n. 3 (17 dicembre 2019): 278–89. http://dx.doi.org/10.1261/rna.073478.119.
Testo completode Almeida Ribeiro, Euripedes, Mads Beich-Frandsen, Petr V. Konarev, Weifeng Shang, Branislav Večerek, Georg Kontaxis, Hermann Hämmerle et al. "Structural flexibility of RNA as molecular basis for Hfq chaperone function". Nucleic Acids Research 40, n. 16 (18 giugno 2012): 8072–84. http://dx.doi.org/10.1093/nar/gks510.
Testo completoKrüger, Dennis M., Johannes Bergs, Sina Kazemi e Holger Gohlke. "Target Flexibility in RNA−Ligand Docking Modeled by Elastic Potential Grids". ACS Medicinal Chemistry Letters 2, n. 7 (12 aprile 2011): 489–93. http://dx.doi.org/10.1021/ml100217h.
Testo completoChao, Jeffrey A., G. S. Prasad, Susan A. White, C. David Stout e James R. Williamson. "Inherent Protein Structural Flexibility at the RNA-binding Interface of L30e". Journal of Molecular Biology 326, n. 4 (febbraio 2003): 999–1004. http://dx.doi.org/10.1016/s0022-2836(02)01476-6.
Testo completoDe Carlo, Sacha, Christophe Carles, Michel Riva e Patrick Schultz. "Cryo-negative Staining Reveals Conformational Flexibility Within Yeast RNA Polymerase I". Journal of Molecular Biology 329, n. 5 (giugno 2003): 891–902. http://dx.doi.org/10.1016/s0022-2836(03)00510-2.
Testo completoKasprzak, Wojciech K., Kirill A. Afonin, Eckart Bindewald, Praneet S. Puppala, Tae-Jin Kim, Michael T. Zimmermann, Robert L. Jernigan e Bruce A. Shapiro. "Coarse-Grained Computational Characterization of RNA Nanocube Flexibility Correlates with Experiments". Biophysical Journal 104, n. 2 (gennaio 2013): 16a. http://dx.doi.org/10.1016/j.bpj.2012.11.119.
Testo completoZacharias, Martin, e Paul J. Hagerman. "The Influence of Symmetric Internal Loops on the Flexibility of RNA". Journal of Molecular Biology 257, n. 2 (marzo 1996): 276–89. http://dx.doi.org/10.1006/jmbi.1996.0162.
Testo completoGuruge, Ivantha, Ghazaleh Taherzadeh, Jian Zhan, Yaoqi Zhou e Yuedong Yang. "B -factor profile prediction for RNA flexibility using support vector machines". Journal of Computational Chemistry 39, n. 8 (21 novembre 2017): 407–11. http://dx.doi.org/10.1002/jcc.25124.
Testo completoLozano, Gloria, Alejandro Trapote, Jorge Ramajo, Xavier Elduque, Anna Grandas, Jordi Robles, Enrique Pedroso e Encarnación Martínez-Salas. "Local RNA flexibility perturbation of the IRES element induced by a novel ligand inhibits viral RNA translation". RNA Biology 12, n. 5 (16 marzo 2015): 555–68. http://dx.doi.org/10.1080/15476286.2015.1025190.
Testo completoMurchie, Alastair I. H., Ben Davis, Catherine Isel, Mohammad Afshar, Martin J. Drysdale, Justin Bower, Andrew J. Potter et al. "Structure-based Drug Design Targeting an Inactive RNA Conformation: Exploiting the Flexibility of HIV-1 TAR RNA". Journal of Molecular Biology 336, n. 3 (febbraio 2004): 625–38. http://dx.doi.org/10.1016/j.jmb.2003.12.028.
Testo completoNoble, C. G., S. P. Lim, Y. L. Chen, C. W. Liew, L. Yap, J. Lescar e P. Y. Shi. "Conformational Flexibility of the Dengue Virus RNA-Dependent RNA Polymerase Revealed by a Complex with an Inhibitor". Journal of Virology 87, n. 9 (13 febbraio 2013): 5291–95. http://dx.doi.org/10.1128/jvi.00045-13.
Testo completoChuwdhury, GS, Irene Oi-Lin Ng e Daniel Wai-Hung Ho. "scAnalyzeR: A Comprehensive Software Package With Graphical User Interface for Single-Cell RNA Sequencing Analysis and its Application on Liver Cancer". Technology in Cancer Research & Treatment 21 (gennaio 2022): 153303382211427. http://dx.doi.org/10.1177/15330338221142729.
Testo completoRohayem, Jacques, Katrin Jäger, Ivonne Robel, Ulrike Scheffler, Achim Temme e Wolfram Rudolph. "Characterization of norovirus 3Dpol RNA-dependent RNA polymerase activity and initiation of RNA synthesis". Journal of General Virology 87, n. 9 (1 settembre 2006): 2621–30. http://dx.doi.org/10.1099/vir.0.81802-0.
Testo completoTavallaie, Roya, Nadim Darwish, D. Brynn Hibbert e J. Justin Gooding. "Nucleic-acid recognition interfaces: how the greater ability of RNA duplexes to bend towards the surface influences electrochemical sensor performance". Chemical Communications 51, n. 92 (2015): 16526–29. http://dx.doi.org/10.1039/c5cc05450h.
Testo completoVázquez, Ana López, José M. Martín Alonso e Francisco Parra. "Mutation Analysis of the GDD Sequence Motif of a Calicivirus RNA-Dependent RNA Polymerase". Journal of Virology 74, n. 8 (15 aprile 2000): 3888–91. http://dx.doi.org/10.1128/jvi.74.8.3888-3891.2000.
Testo completoMishler, D. M., A. B. Christ e J. A. Steitz. "Flexibility in the site of exon junction complex deposition revealed by functional group and RNA secondary structure alterations in the splicing substrate". RNA 14, n. 12 (24 ottobre 2008): 2657–70. http://dx.doi.org/10.1261/rna.1312808.
Testo completoChamberlin, Stacy I., e Kevin M. Weeks. "Mapping Local Nucleotide Flexibility by Selective Acylation of 2‘-Amine Substituted RNA". Journal of the American Chemical Society 122, n. 2 (gennaio 2000): 216–24. http://dx.doi.org/10.1021/ja9914137.
Testo completoEgli, M., G. Minasov, L. Su e A. Rich. "Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution". Proceedings of the National Academy of Sciences 99, n. 7 (19 marzo 2002): 4302–7. http://dx.doi.org/10.1073/pnas.062055599.
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