Letteratura scientifica selezionata sul tema "Lipid-bilayer insertion"
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Articoli di riviste sul tema "Lipid-bilayer insertion":
Khalid, Syma, Peter J. Bond, John Holyoake, Robert W. Hawtin e Mark S. P. Sansom. "DNA and lipid bilayers: self-assembly and insertion". Journal of The Royal Society Interface 5, suppl_3 (2 settembre 2008): 241–50. http://dx.doi.org/10.1098/rsif.2008.0239.focus.
Slaybaugh, Gregory, Dhammika Weerakkody, Donald M. Engelman, Oleg A. Andreev e Yana K. Reshetnyak. "Kinetics of pHLIP peptide insertion into and exit from a membrane". Proceedings of the National Academy of Sciences 117, n. 22 (14 maggio 2020): 12095–100. http://dx.doi.org/10.1073/pnas.1917857117.
SHEPHERD, Craig M., Hans J. VOGEL e D. Peter TIELEMAN. "Interactions of the designed antimicrobial peptide MB21 and truncated dermaseptin S3 with lipid bilayers: molecular-dynamics simulations". Biochemical Journal 370, n. 1 (15 febbraio 2003): 233–43. http://dx.doi.org/10.1042/bj20021255.
Reshetnyak, Yana K., Oleg A. Andreev, Michael Segala, Vladislav S. Markin e Donald M. Engelman. "Energetics of peptide (pHLIP) binding to and folding across a lipid bilayer membrane". Proceedings of the National Academy of Sciences 105, n. 40 (30 settembre 2008): 15340–45. http://dx.doi.org/10.1073/pnas.0804746105.
Salvador-Castell, Marta, Nicholas J. Brooks, Roland Winter, Judith Peters e Philippe M. Oger. "Non-Polar Lipids as Regulators of Membrane Properties in Archaeal Lipid Bilayer Mimics". International Journal of Molecular Sciences 22, n. 11 (4 giugno 2021): 6087. http://dx.doi.org/10.3390/ijms22116087.
Jo, Euijung, Jack Blazyk e Joan M. Boggs. "Insertion of Magainin into the Lipid Bilayer Detected Using Lipid Photolabels†". Biochemistry 37, n. 39 (settembre 1998): 13791–99. http://dx.doi.org/10.1021/bi980855c.
Yue, Tongtao, Mingbin Sun, Shuai Zhang, Hao Ren, Baosheng Ge e Fang Huang. "How transmembrane peptides insert and orientate in biomembranes: a combined experimental and simulation study". Physical Chemistry Chemical Physics 18, n. 26 (2016): 17483–94. http://dx.doi.org/10.1039/c6cp01133k.
Hyland, Caroline, Laurent Vuillard, Colin Hughes e Vassilis Koronakis. "Membrane Interaction of Escherichia coliHemolysin: Flotation and Insertion-Dependent Labeling by Phospholipid Vesicles". Journal of Bacteriology 183, n. 18 (15 settembre 2001): 5364–70. http://dx.doi.org/10.1128/jb.183.18.5364-5370.2001.
Weerakkody, Dhammika, Oleg A. Andreev e Yana K. Reshetnyak. "Insertion into lipid bilayer of truncated pHLIP ® peptide". Biochemistry and Biophysics Reports 8 (dicembre 2016): 290–95. http://dx.doi.org/10.1016/j.bbrep.2016.10.001.
Takahashi, Akira, Chiyo Yamamoto, Toshio Kodama, Kanami Yamashita, Nagakatsu Harada, Masayuki Nakano, Takeshi Honda e Yutaka Nakaya. "Pore Formation of Thermostable Direct Hemolysin Secreted from Vibrio parahaemolyticus in Lipid Bilayers". International Journal of Toxicology 25, n. 5 (settembre 2006): 409–18. http://dx.doi.org/10.1080/10915810600868181.
Tesi sul tema "Lipid-bilayer insertion":
Johansson, Anna CV. "Solvation properties of proteins in membranes". Doctoral thesis, Stockholms universitet, Institutionen för biokemi och biofysik, 2009. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-27437.
Lanrezac, André. "Interprétation de données expérimentales par simulation et visualisation moléculaire interactive". Electronic Thesis or Diss., Université Paris Cité, 2023. http://www.theses.fr/2023UNIP7133.
The goal of Interactive Molecular Simulations (IMS) is to observe the conformational dynamics of a molecular simulation in real-time. Instant visual feedback enables informative monitoring and observation of structural changes imposed by the user's manipulation of the IMS. I conducted an in-depth study of knowledge to gather and synthesize all the research that has developed IMS. Interactive Molecular Dynamics (IMD) is one of the first IMS protocols that laid the foundation for the development of this approach. My thesis laboratory was inspired by IMD to develop the BioSpring simulation engine based on the elastic network model. This model allows for the simulation of the flexibility of large biomolecular ensembles, potentially revealing long-timescale changes that would not be easily captured by molecular dynamics. This simulation engine, along with the UnityMol visualization software, developed through the Unity3D game engine, and linked by the MDDriver communication interface, has been extended to converge towards a complete software suite. The goal is to provide an experimenter, whether an expert or novice, with a complete toolbox for modeling, displaying, and interactively controlling all parameters of a simulation. The particular implementation of such a protocol, based on formalized and extensible communication between the different components, was designed to easily integrate new possibilities for interactive manipulation and sets of experimental data that will be added to the restraints imposed on the simulation. Therefore, the user can manipulate the molecule of interest under the control of biophysical properties integrated into the simulated model, while also having the ability to dynamically adjust simulation parameters. Furthermore, one of the initial objectives of this thesis was to integrate the management of ambiguous interaction constraints from the HADDOCK biomolecular docking software directly into UnityMol, making it possible to use these same restraints with a variety of simulation engines. A primary focus of this research was to develop a fast and interactive protein positioning algorithm in implicit membranes using a model called the Integrative Membrane Protein and Lipid Association Method (IMPALA), developed by Robert Brasseur's team in 1998. The first step was to conduct an in-depth search of the conditions under which the experiments were performed at the time to verify the method and validate our own implementation. We will see that this opens up interesting questions about how scientific experiments can be reproduced. The final step that concluded this thesis was the development of a new universal lipid-protein interaction method, UNILIPID, which is an interactive protein incorporation model in implicit membranes. It is independent of the representation scale and can be applied at the all-atom, coarse-grain, or grain-by-grain level. The latest Martini3 representation, as well as a Monte Carlo sampling method and rigid body dynamics simulation, have been specially integrated into the method, in addition to various system preparation tools. Furthermore, UNILIPID is a versatile approach that precisely reproduces experimental hydrophobicity terms for each amino acid. In addition to simple implicit membranes, I will describe an analytical implementation of double membranes as well as a generalization to arbitrarily shaped membranes, both of which rely on novel applications
Capitoli di libri sul tema "Lipid-bilayer insertion":
Shoji, Kan. "De-Insertion Current Analysis of Pore-Forming Peptides and Proteins Using Gold Electrode-Supported Lipid Bilayer". In Methods in Molecular Biology, 93–102. New York, NY: Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1843-1_8.
Alobeedallah, Hadeel, Bruce A. Cornell e Hans Coster. "Measuring Voltage–Current Characteristics of Tethered Bilayer Lipid Membranes to Determine the Electro-Insertion Properties of Analytes". In Methods in Molecular Biology, 61–69. New York, NY: Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1843-1_5.
Eisenhawer, Martin, Mark Soekaijo, Andreas Kuhn e Horst Vogel. "Thermodynamics of the membrane insertion process of the M13 procoat protein, a lipid bilayer traversing protein comprising a leader sequence". In Molecular Dynamics of Biomembranes, 89–97. Berlin, Heidelberg: Springer Berlin Heidelberg, 1996. http://dx.doi.org/10.1007/978-3-642-61126-1_9.
Ulmschneider, Jakob. "New Insights into the Peptide–Membrane Partitioning Equilibrium from In Silico Free Surface-to-Bilayer Peptide Insertion". In Liposomes, Lipid Bilayers and Model Membranes, 99–110. CRC Press, 2014. http://dx.doi.org/10.1201/b16617-7.
Atti di convegni sul tema "Lipid-bilayer insertion":
Taylor, Graham, Donald Leo e Andy Sarles. "Detection of Botulinum Neurotoxin/A Insertion Using an Encapsulated Interface Bilayer". In ASME 2012 Conference on Smart Materials, Adaptive Structures and Intelligent Systems. American Society of Mechanical Engineers, 2012. http://dx.doi.org/10.1115/smasis2012-8101.
Maftouni, Negin, Mehriar Amininasab, MohammadReza Ejtehadi e Farshad Kowsari. "Multiscale Molecular Dynamics Simulation of Nanobio Membrane in Interaction With Protein". In ASME 2013 2nd Global Congress on NanoEngineering for Medicine and Biology. American Society of Mechanical Engineers, 2013. http://dx.doi.org/10.1115/nemb2013-93054.
Nguyen, Mary-Anne, e Stephen A. Sarles. "Microfluidic Generation, Encapsulation and Characterization of Asymmetric Droplet Interface Bilayers". In ASME 2016 Conference on Smart Materials, Adaptive Structures and Intelligent Systems. American Society of Mechanical Engineers, 2016. http://dx.doi.org/10.1115/smasis2016-9034.
Maftouni, Negin, M. Amininasab e Farshad Kowsari. "Molecular Dynamics Study of Nanobio Membranes". In ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology. ASMEDC, 2010. http://dx.doi.org/10.1115/nemb2010-13277.
Sarles, Stephen A., Kevin L. Garrison, Taylor T. Young e Donald J. Leo. "Formation and Encapsulation of Biomolecular Arrays for Developing Arrays of Membrane-Based Artificial Hair Cell Sensors". In ASME 2011 Conference on Smart Materials, Adaptive Structures and Intelligent Systems. ASMEDC, 2011. http://dx.doi.org/10.1115/smasis2011-5095.
Matsuo, Taisuke, Takenori Yamamoto, Kanami Niiyama, Naoshi Yamazaki, Tatsuhiro Ishida, Hiroshi Kiwada, Yasuo Shinohara e Masatoshi Kataoka. "Design, preparation and directional insertion of peptides into lipid bilayer membrane and their application for the preparation of liposome of which surface could be coated by externally added antibody". In 2007 International Symposium on Micro-NanoMechatronics and Human Science. IEEE, 2007. http://dx.doi.org/10.1109/mhs.2007.4420829.
Najem, Joseph S., Graham J. Taylor, Charles P. Collier e Stephen A. Sarles. "Synapse-Inspired Variable Conductance in Biomembranes: A Preliminary Study". In ASME 2017 Conference on Smart Materials, Adaptive Structures and Intelligent Systems. American Society of Mechanical Engineers, 2017. http://dx.doi.org/10.1115/smasis2017-3820.