Letteratura scientifica selezionata sul tema "Lateral gene transfers"
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Articoli di riviste sul tema "Lateral gene transfers":
Andersson, Jan O., e Andrew J. Roger. "Evolutionary Analyses of the Small Subunit of Glutamate Synthase: Gene Order Conservation, Gene Fusions, and Prokaryote-to- Eukaryote Lateral Gene Transfers". Eukaryotic Cell 1, n. 2 (aprile 2002): 304–10. http://dx.doi.org/10.1128/ec.1.2.304-310.2002.
THUILLARD, MARC, e VINCENT MOULTON. "IDENTIFYING AND RECONSTRUCTING LATERAL TRANSFERS FROM DISTANCE MATRICES BY COMBINING THE MINIMUM CONTRADICTION METHOD AND NEIGHBOR-NET". Journal of Bioinformatics and Computational Biology 09, n. 04 (agosto 2011): 453–70. http://dx.doi.org/10.1142/s0219720011005409.
Tofigh, A., M. Hallett e J. Lagergren. "Simultaneous Identification of Duplications and Lateral Gene Transfers". IEEE/ACM Transactions on Computational Biology and Bioinformatics 8, n. 2 (marzo 2011): 517–35. http://dx.doi.org/10.1109/tcbb.2010.14.
Marri, Pradeep Reddy, John P. Bannantine, Michael L. Paustian e G. Brian Golding. "Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis". Canadian Journal of Microbiology 52, n. 6 (1 giugno 2006): 560–69. http://dx.doi.org/10.1139/w06-001.
Zhi-Zhong Chen, Fei Deng e Lusheng Wang. "Simultaneous Identification of Duplications, Losses, and Lateral Gene Transfers". IEEE/ACM Transactions on Computational Biology and Bioinformatics 9, n. 5 (settembre 2012): 1515–28. http://dx.doi.org/10.1109/tcbb.2012.79.
Yubuki, Naoji, Luis Javier Galindo, Guillaume Reboul, Purificación López-García, Matthew W. Brown, Nicolas Pollet e David Moreira. "Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina–Blastocystis Stramenopile Lineage". Molecular Biology and Evolution 37, n. 3 (6 novembre 2019): 651–59. http://dx.doi.org/10.1093/molbev/msz250.
Friedrich, Michael W. "Phylogenetic Analysis Reveals Multiple Lateral Transfers of Adenosine-5′-Phosphosulfate Reductase Genes among Sulfate-Reducing Microorganisms". Journal of Bacteriology 184, n. 1 (1 gennaio 2002): 278–89. http://dx.doi.org/10.1128/jb.184.1.278-289.2002.
Abby, Sophie S., Eric Tannier, Manolo Gouy e Vincent Daubin. "Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests". BMC Bioinformatics 11, n. 1 (2010): 324. http://dx.doi.org/10.1186/1471-2105-11-324.
Alsmark, Cecilia, Peter G. Foster, Thomas Sicheritz-Ponten, Sirintra Nakjang, T. Martin Embley e Robert P. Hirt. "Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes". Genome Biology 14, n. 2 (2013): R19. http://dx.doi.org/10.1186/gb-2013-14-2-r19.
Gophna, Uri. "Complexity Apparently Is Not a Barrier to Lateral Gene Transfers". Microbe Magazine 4, n. 12 (1 dicembre 2009): 549–53. http://dx.doi.org/10.1128/microbe.4.549.1.
Tesi sul tema "Lateral gene transfers":
Vieira, Rute Gomes Velosa. "Bayesian phylogenetic modelling of lateral gene transfers". Thesis, University of Newcastle upon Tyne, 2015. http://hdl.handle.net/10443/3018.
Tofigh, Ali. "Using Trees to Capture Reticulate Evolution : Lateral Gene Transfers and Cancer Progression". Doctoral thesis, KTH, Beräkningsbiologi, CB, 2009. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-10608.
QC 20100812
Belliardo, Carole. "Étude des transferts horizontaux de gènes chez les nématodes phytoparasites par l'exploitation de métagénomes du sol". Electronic Thesis or Diss., Université Côte d'Azur, 2022. http://theses.univ-cotedazur.fr/2022COAZ6032.
Plant-parasitic nematodes (PPN) are among the most important crop pests and threaten the world's food production. Besides the need to understand their biology to develop new control strategies, they are fascinating organisms in terms of genomic evolution. Plant parasitism has evolved several times independently in nematodes with some convergent evolutionary processes. For instance, all studied PPN have acquired bacterial and fungal genes by horizontal gene transfers (HGT). Some of the acquired genes are involved in essential parasitic functions like plant cell wall degradation or processing nutrients from the plant. However, several major questions concerning their origin, evolutionary fate and distribution in the genomes and timing of acquisition events remain unsolved. Most PPN live in soil; thus, we hypothesised that these genes originated from soil-dwelling microorganisms. However, the underrepresentation of soil microorganisms in generalist sequence libraries has previously limited HGT analyses.To circumvent this problem, we built a protein library including more than 6,800 soil metagenomes from the Joint Genome Institute's IMG/M server. The first challenge was to make this massive dataset more accurate and suitable for HGT analysis in PPN genomes. An important issue in metagenomic data is the underrepresentation of eukaryotes and their annotation with prokaryotic tools. To better represent the pool of genes present in the natural environments of PPN, we identified eukaryotic contigs and re-predicted proteins using Augustus, a eukaryotic dedicated gene predictor. Moreover, we reduced the protein sequence redundancy and refined the taxonomic assignment. After all these steps, we obtained an improved and non-redundant database that was more representative of the soil's natural biodiversity. This soil protein library, two times larger than the classic library, contains mainly organisms genetically divergent than lab-cultured.Then, we performed an HGT detection on proteins from 18 plant-parasitic nematode genomes of the Tylenchina clade, constituting a highly diverse group of PPN phenotypes, against our library enriched with soil protein. After manual curation, the proportion of genes acquired by horizontal transfers with phylogenetic confirmation is between 0.5 to 1.9% to protein-coding genes originating from HGT in PPN genomes. Those genes mainly originate from bacteria, but we also observed HGT from eukaryotic kingdoms such as fungi, protists and plants. The most represented taxa in donors are soil-dwelling species of clades Burkholderiaceae, Proteobacteria, Actinobacteria, Rhizobiales and Dikarya. The usage of metagenomic data clarified the history of previously described HGTs but also identified hundreds of new HGTs. Functional analyses of the newly identified HGTs indicate a wide diversity of potential functions whose biological implications can be more precisely described in in-vitro experiments. Integrating environmental data in our reference library has allowed us to extend the detection of HGTs and to complete the catalog of potential donor offspring
Lester, Leo. "On Lateral Gene Transfer". Thesis, University of Reading, 2006. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.487489.
Cheeseman, Kevin. "Aspects of Penicillium genomics : Molecular combing genome assembly, genetic exchange in food and potential for secondary metabolite production". Thesis, Paris 11, 2013. http://www.theses.fr/2013PA112280/document.
Penicillium are filamentous fungi belonging to the Ascomycota genus. Penicillium species have been used by Man for centuries in food making processes. More recently they have also been used in the biotechnology industry for the production of compounds of pharmaceutical interest. Some Penicillium species are food spoilage agents, pathogens of plants including fruits. Aspects of their genomics are largely unknown. In this study, we analysed the genomes of two newly sequenced species, Penicillium roqueforti and Penicillium camemberti. Here we report the development of a new methodology for improving and validating genome assembly using an original single DNA molecule technology, Molecular Combing. Using this methodology we were able to produce a high quality genome assembly of Penicillium roqueforti. This work also reports the multiple and recurrent horizontal transfer of a large genomic island of over half a megabase between several Penicillium species. This horizontal transfer indicates a higher frequency of lateral genetic exchange between cheesemaking fungi than previously expected. Finally, we present an early assessment of the genomic potential for secondary metabolite production in these important food associated penicilliums
Addario-Berry, Dana. "An analysis of models and algorithms for gene duplication and lateral gene transfer /". Thesis, McGill University, 2004. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=80161.
This thesis explores several aspects of both of these simplifed models of evolution. A brief exposition of the models is presented, along with previous results and various extensions to these models.
The expected number of gene duplications needed to explain disagreements between a random gene and species tree is investigated.
A method for incorporating edge weights into the species tree is proposed.
Khan, Mehmood Alam. "Computational Problems in Modeling Evolution and Inferring Gene Families". Doctoral thesis, KTH, Beräkningsvetenskap och beräkningsteknik (CST), 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-193637.
QC 20161010
Wilber, Matthew. "Building a History of Horizontal Gene Transfer in E. Coli". Scholarship @ Claremont, 2016. http://scholarship.claremont.edu/hmc_theses/75.
Yan, Yongpan. "Computational analyses of microbial genomes operons, protein families and lateral gene transfer /". College Park, Md. : University of Maryland, 2005. http://hdl.handle.net/1903/2596.
Thesis research directed by: Cell Biology & Molecular Genetics. Title from t.p. of PDF. Includes bibliographical references. Published by UMI Dissertation Services, Ann Arbor, Mich. Also available in paper.
Andam, Cheryl Marie Palacay. "Role of lateral gene transfer in the evolution of legume nodule symbionts". Diss., Online access via UMI:, 2007.
Libri sul tema "Lateral gene transfers":
Gophna, Uri, a cura di. Lateral Gene Transfer in Evolution. New York, NY: Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4614-7780-8.
Gophna, Uri. Lateral Gene Transfer in Evolution. Springer New York, 2015.
Lateral Gene Transfer in Evolution. Springer-Verlag New York Inc., 2013.
Gophna, Uri. Lateral Gene Transfer in Evolution. Springer London, Limited, 2013.
Gontier, Nathalie. Reticulate Evolution: Symbiogenesis, Lateral Gene Transfer, Hybridization and Infectious Heredity. Springer, 2015.
Gontier, Nathalie. Reticulate Evolution: Symbiogenesis, Lateral Gene Transfer, Hybridization and Infectious Heredity. Springer, 2015.
Magowan, Fiona. Mission Music as a Mode of Intercultural Transmission, Charisma, and Memory in Northern Australia. A cura di Jonathan Dueck e Suzel Ana Reily. Oxford University Press, 2013. http://dx.doi.org/10.1093/oxfordhb/9780199859993.013.001.
Capitoli di libri sul tema "Lateral gene transfers":
Davín, Adrián A., Dominik Schrempf, Tom A. Williams, Philip Hugenholtz e Gergely J. Szöllősi. "Relative Time Inference Using Lateral Gene Transfers". In Methods in Molecular Biology, 75–94. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2691-7_4.
López-García, Purificación. "Lateral Gene Transfer". In Encyclopedia of Astrobiology, 914–15. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-11274-4_1727.
López-García, Purificación. "Lateral Gene Transfer". In Encyclopedia of Astrobiology, 1372–73. Berlin, Heidelberg: Springer Berlin Heidelberg, 2015. http://dx.doi.org/10.1007/978-3-662-44185-5_1727.
Gooch, Jan W. "Lateral Gene Transfer". In Encyclopedic Dictionary of Polymers, 903. New York, NY: Springer New York, 2011. http://dx.doi.org/10.1007/978-1-4419-6247-8_14096.
Fritz, Hans-Joachim. "Lateral Gene Transfer". In Encyclopedia of Geobiology, 533–35. Dordrecht: Springer Netherlands, 2011. http://dx.doi.org/10.1007/978-1-4020-9212-1_126.
López-García, Purificación. "Lateral Gene Transfer". In Encyclopedia of Astrobiology, 1–2. Berlin, Heidelberg: Springer Berlin Heidelberg, 2014. http://dx.doi.org/10.1007/978-3-642-27833-4_1727-3.
López-García, Purificación. "Lateral Gene Transfer". In Encyclopedia of Astrobiology, 1660–61. Berlin, Heidelberg: Springer Berlin Heidelberg, 2023. http://dx.doi.org/10.1007/978-3-662-65093-6_1727.
Skippington, Elizabeth, e Mark A. Ragan. "Lateral Genetic Transfer and Cellular Networks". In Lateral Gene Transfer in Evolution, 123–35. New York, NY: Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4614-7780-8_6.
Dunning Hotopp, Julie C. "Lateral Gene Transfer in Multicellular Organisms". In Lateral Gene Transfer in Evolution, 161–79. New York, NY: Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4614-7780-8_9.
Levin, Itay, Moshe Giladi e Uri Gophna. "Lateral Gene Transfer and the Synthesis of Thymidine". In Lateral Gene Transfer in Evolution, 3–14. New York, NY: Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4614-7780-8_1.
Atti di convegni sul tema "Lateral gene transfers":
Chen, Zhi-Zhong, Fei Deng e Lusheng Wang. "Identifying duplications and lateral gene transfers simultaneously and rapidly". In 2013 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). IEEE, 2013. http://dx.doi.org/10.1109/cibcb.2013.6595398.
Werren, Jack. "How important are bacteria-eukaryote lateral gene transfers to arthropod evolution?" In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.93233.
ADDARIO-BERRY, L., M. HALLETT e J. LAGERGREN. "TOWARDS IDENTIFYING LATERAL GENE TRANSFER EVENTS". In Proceedings of the Pacific Symposium. WORLD SCIENTIFIC, 2002. http://dx.doi.org/10.1142/9789812776303_0027.
RAGAN, MARK A. "AUTOMATING THE SEARCH FOR LATERAL GENE TRANSFER". In 4th Asia-Pacific Bioinformatics Conference. PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO., 2005. http://dx.doi.org/10.1142/9781860947292_0002.
Hallett, M. T., e J. Lagergren. "Efficient algorithms for lateral gene transfer problems". In the fifth annual international conference. New York, New York, USA: ACM Press, 2001. http://dx.doi.org/10.1145/369133.369188.
Dunning-Hotopp, Julie C. "Lateral gene transfer from bacteria to animals, including humans". In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.93235.
Chen, Kuo-Huey, Taeyoung Han, Bahram Khalighi e Philip Klaus. "Air Cooling Concepts for Li-Ion Battery Pack in Cell Level". In ASME 2017 Heat Transfer Summer Conference. American Society of Mechanical Engineers, 2017. http://dx.doi.org/10.1115/ht2017-4701.
Daskalakis, Constantinos, e Sebastien Roch. "Species Trees from Gene Trees Despite a High Rate of Lateral Genetic Transfer: A Tight Bound (Extended Abstract)". In Proceedings of the Twenty-Seventh Annual ACM-SIAM Symposium on Discrete Algorithms. Philadelphia, PA: Society for Industrial and Applied Mathematics, 2015. http://dx.doi.org/10.1137/1.9781611974331.ch110.
Rapporti di organizzazioni sul tema "Lateral gene transfers":
Barkay, Tamar, e Patricia Sobecky. Lateral gene transfer in the subsurface. Office of Scientific and Technical Information (OSTI), agosto 2007. http://dx.doi.org/10.2172/913060.
Howard Ochman. LATERAL GENE TRANSFER AND THE HISTORY OF BACTERIAL GENOMES. Office of Scientific and Technical Information (OSTI), febbraio 2006. http://dx.doi.org/10.2172/876510.
Sobecky, Patricia A. The Role of the Horizontal Gene Pool and Lateral Gene Transfer in Enhancing Microbial Activities in Marine Sediments. Fort Belvoir, VA: Defense Technical Information Center, maggio 2006. http://dx.doi.org/10.21236/ada447026.
Barkay, Tamar. Lateral Gene Transfer Among Subsurface Bacteria: Horizontal Gene Flow in Microbial Communities: A Special Focus Issue, Web Focus and Supplement. Office of Scientific and Technical Information (OSTI), novembre 2009. http://dx.doi.org/10.2172/967075.
Newton, Ronald, Joseph Riov e John Cairney. Isolation and Functional Analysis of Drought-Induced Genes in Pinus. United States Department of Agriculture, settembre 1993. http://dx.doi.org/10.32747/1993.7568752.bard.
Gera, Abed, Abed Watad, P. Ueng, Hei-Ti Hsu, Kathryn Kamo, Peter Ueng e A. Lipsky. Genetic Transformation of Flowering Bulb Crops for Virus Resistance. United States Department of Agriculture, gennaio 2001. http://dx.doi.org/10.32747/2001.7575293.bard.