Littérature scientifique sur le sujet « Whole slide images classification »
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Articles de revues sur le sujet "Whole slide images classification"
Fell, Christina, Mahnaz Mohammadi, David Morrison, Ognjen Arandjelović, Sheeba Syed, Prakash Konanahalli, Sarah Bell, Gareth Bryson, David J. Harrison et David Harris-Birtill. « Detection of malignancy in whole slide images of endometrial cancer biopsies using artificial intelligence ». PLOS ONE 18, no 3 (8 mars 2023) : e0282577. http://dx.doi.org/10.1371/journal.pone.0282577.
Texte intégralGovind, Darshana, Brendon Lutnick, John E. Tomaszewski et Pinaki Sarder. « Automated erythrocyte detection and classification from whole slide images ». Journal of Medical Imaging 5, no 02 (10 avril 2018) : 1. http://dx.doi.org/10.1117/1.jmi.5.2.027501.
Texte intégralNeto, Pedro C., Sara P. Oliveira, Diana Montezuma, João Fraga, Ana Monteiro, Liliana Ribeiro, Sofia Gonçalves, Isabel M. Pinto et Jaime S. Cardoso. « iMIL4PATH : A Semi-Supervised Interpretable Approach for Colorectal Whole-Slide Images ». Cancers 14, no 10 (18 mai 2022) : 2489. http://dx.doi.org/10.3390/cancers14102489.
Texte intégralFranklin, Daniel L., Tara Pattilachan et Anthony Magliocco. « Abstract 5048 : Imaging based EGFR mutation subtype classification using EfficientNet ». Cancer Research 82, no 12_Supplement (15 juin 2022) : 5048. http://dx.doi.org/10.1158/1538-7445.am2022-5048.
Texte intégralAhmed, Shakil, Asadullah Shaikh, Hani Alshahrani, Abdullah Alghamdi, Mesfer Alrizq, Junaid Baber et Maheen Bakhtyar. « Transfer Learning Approach for Classification of Histopathology Whole Slide Images ». Sensors 21, no 16 (9 août 2021) : 5361. http://dx.doi.org/10.3390/s21165361.
Texte intégralFu, Zhibing, Qingkui Chen, Mingming Wang et Chen Huang. « Whole slide images classification model based on self-learning sampling ». Biomedical Signal Processing and Control 90 (avril 2024) : 105826. http://dx.doi.org/10.1016/j.bspc.2023.105826.
Texte intégralFridman, M. V., A. A. Kosareva, E. V. Snezhko, P. V. Kamlach et V. A. Kovalev. « Papillary thyroid carcinoma whole-slide images as a basis for deep learning ». Informatics 20, no 2 (29 juin 2023) : 28–38. http://dx.doi.org/10.37661/1816-0301-2023-20-2-28-38.
Texte intégralJansen, Philipp, Adelaida Creosteanu, Viktor Matyas, Amrei Dilling, Ana Pina, Andrea Saggini, Tobias Schimming et al. « Deep Learning Assisted Diagnosis of Onychomycosis on Whole-Slide Images ». Journal of Fungi 8, no 9 (28 août 2022) : 912. http://dx.doi.org/10.3390/jof8090912.
Texte intégralLewis, Joshua, Xuebao Zhang, Nithya Shanmugam, Bradley Drumheller, Conrad Shebelut, Geoffrey Smith, Lee Cooper et David Jaye. « Machine Learning-Based Automated Selection of Regions for Analysis on Bone Marrow Aspirate Smears ». American Journal of Clinical Pathology 156, Supplement_1 (1 octobre 2021) : S1—S2. http://dx.doi.org/10.1093/ajcp/aqab189.001.
Texte intégralEl-Hossiny, Ahmed S., Walid Al-Atabany, Osama Hassan, Ahmed M. Soliman et Sherif A. Sami. « Classification of Thyroid Carcinoma in Whole Slide Images Using Cascaded CNN ». IEEE Access 9 (2021) : 88429–38. http://dx.doi.org/10.1109/access.2021.3076158.
Texte intégralThèses sur le sujet "Whole slide images classification"
Pirovano, Antoine. « Computer-aided diagnosis methods for cervical cancer screening on liquid-based Pap smears using convolutional neural networks : design, optimization and interpretability ». Electronic Thesis or Diss., Institut polytechnique de Paris, 2021. http://www.theses.fr/2021IPPAT011.
Texte intégralCervical cancer is the second most important cancer for women after breast cancer. In 2012, the number of cases exceeded 500,000 worldwide, among which half turned to be deadly.Until today, primary cervical cancer screening is performed by a regular visual analysis of cells, sampled by pap-smear by cytopathologists under brightfield microscopy in pathology laboratories. In France, about 5 millions of cervical screening are performed each year and about 90% lead to a negative diagnosis (i.e. no pre-cancerous changes detected). Yet, these analyses under microscope are extremely tedious and time-consuming for cytotechnicians and can require the joint opinion of several experts. This process has an impact on the capacity to tackle this huge amount of cases and to avoid false negatives that are the main cause of treatment delay. The lack of automation and traceability of screening is thus becoming more critical as the number of cyto-pathologists decreases. In that respect, the integration of digital tools in pathology laboratories is becoming a real public health stake for patients and the privileged path for the improvement of these laboratories. Since 2012, deep learning methods have revolutionized the computer vision field, in particular thanks to convolutional neural networks that have been applied successfully to a wide range of applications among which biomedical imaging. Along with it, the whole slide imaging digitization process has opened the opportunity for new efficient computer-aided diagnosis methods and tools. In this thesis, after motivating the medical needs and introducing the state-of-the-art deep learning methods for image processing and understanding, we present our contribution to the field of computer vision tackling cervical cancer screening in the context of liquid-based cytology. Our first contribution consists in proposing a simple regularization constraint for classification model training in the context of ordinal regression tasks (i.e. ordered classes). We prove the advantage of our method on cervical cells classification using Herlev dataset. Furthermore, we propose to rely on explanations from gradient-based explanations to perform weakly-supervised localization and detection of abnormality. Finally, we show how we integrate these methods as a computer-aided tool that could be used to reduce the workload of cytopathologists.The second contribution focuses on whole slide classification and the interpretability of these pipelines. We present in detail the most popular approaches for whole slide classification relying on multiple instance learning, and improve the interpretability in a context of weakly-supervised learning through tile-level feature visualizations and a novel manner of computing explanations of heat-maps. Finally, we apply these methods for cervical cancer screening by using a weakly trained “abnormality” detector for region of interest sampling that guides the training
Lerousseau, Marvin. « Weakly Supervised Segmentation and Context-Aware Classification in Computational Pathology ». Electronic Thesis or Diss., université Paris-Saclay, 2022. http://www.theses.fr/2022UPASG015.
Texte intégralAnatomic pathology is the medical discipline responsible for the diagnosis and characterization of diseases through the macroscopic, microscopic, molecular and immunologic inspection of tissues. Modern technologies have made possible the digitization of tissue glass slides into whole slide images, which can themselves be processed by artificial intelligence to enhance the capabilities of pathologists. This thesis presented several novel and powerful approaches that tackle pan-cancer segmentation and classification of whole slide images. Learning segmentation models for whole slide images is challenged by an annotation bottleneck which arises from (i) a shortage of pathologists, (ii) an intense cumbersomeness and boring annotation process, and (iii) major inter-annotators discrepancy. My first line of work tackled pan-cancer tumor segmentation by designing two novel state-of-the-art weakly supervised approaches that exploit slide-level annotations that are fast and easy to obtain. In particular, my second segmentation contribution was a generic and highly powerful algorithm that leverages percentage annotations on a slide basis, without needing any pixelbased annotation. Extensive large-scale experiments showed the superiority of my approaches over weakly supervised and supervised methods for pan-cancer tumor segmentation on a dataset of more than 15,000 unfiltered and extremely challenging whole slide images from snap-frozen tissues. My results indicated the robustness of my approaches to noise and systemic biases in annotations. Digital slides are difficult to classify due to their colossal sizes, which range from millions of pixels to billions of pixels, often weighing more than 500 megabytes. The straightforward use of traditional computer vision is therefore not possible, prompting the use of multiple instance learning, a machine learning paradigm consisting in assimilating a whole slide image as a set of patches uniformly sampled from it. Up to my works, the greater majority of multiple instance learning approaches considered patches as independently and identically sampled, i.e. discarded the spatial relationship of patches extracted from a whole slide image. Some approaches exploited such spatial interconnection by leveraging graph-based models, although the true domain of whole slide images is specifically the image domain which is more suited with convolutional neural networks. I designed a highly powerful and modular multiple instance learning framework that leverages the spatial relationship of patches extracted from a whole slide image by building a sparse map from the patches embeddings, which is then further processed into a whole slide image embedding by a sparse-input convolutional neural network, before being classified by a generic classifier model. My framework essentially bridges the gap between multiple instance learning, and fully convolutional classification. I performed extensive experiments on three whole slide image classification tasks, including the golden task of cancer pathologist of subtyping tumors, on a dataset of more than 20,000 whole slide images from public data. Results highlighted the superiority of my approach over all other widespread multiple instance learning methods. Furthermore, while my experiments only investigated my approach with sparse-input convolutional neural networks with two convolutional layers, the results showed that my framework works better as the number of parameters increases, suggesting that more sophisticated convolutional neural networks can easily obtain superior results
Дяченко, Є. В. « Інформаційна технологія розпізнавання онкопатологій на повнослайдових гістологічних зображеннях ». Master's thesis, Сумський державний університет, 2020. https://essuir.sumdu.edu.ua/handle/123456789/78594.
Texte intégralPhillips, Adon. « Melanoma Diagnostics Using Fully Convolutional Networks on Whole Slide Images ». Thesis, Université d'Ottawa / University of Ottawa, 2017. http://hdl.handle.net/10393/36929.
Texte intégralTrahearn, Nicholas. « Registration and multi-immunohistochemical analysis of whole slide images of serial tissue sections ». Thesis, University of Warwick, 2017. http://wrap.warwick.ac.uk/89986/.
Texte intégralKhire, Sourabh Mohan. « Time-sensitive communication of digital images, with applications in telepathology ». Thesis, Atlanta, Ga. : Georgia Institute of Technology, 2009. http://hdl.handle.net/1853/29761.
Texte intégralCommittee Chair: Jayant, Nikil; Committee Member: Anderson, David; Committee Member: Lee, Chin-Hui. Part of the SMARTech Electronic Thesis and Dissertation Collection.
Huang, Pei-Chen, et 黃珮楨. « Real Time Automatic Lung Tumor Segmentation in Whole-slide Histopathological Images ». Thesis, 2019. http://ndltd.ncl.edu.tw/handle/2h8u6r.
Texte intégralLee, Chieh-Chi, et 李捷琦. « Computer-aided diagnosis of mycobacteria bacilli detection in digital whole slide pathological images with deep learning architecture ». Thesis, 2019. http://ndltd.ncl.edu.tw/handle/738y92.
Texte intégralMünch, Benno Jürgen Helmut. « Whole Tumor Histogramm-profiling of Diffusion-Weighted Magnetic Resonance Images reflects tumorbiological features of Primary Central Nervous System Lymphoma ». 2018. https://ul.qucosa.de/id/qucosa%3A34107.
Texte intégralChapitres de livres sur le sujet "Whole slide images classification"
Apou, Grégory, Benoît Naegel, Germain Forestier, Friedrich Feuerhake et Cédric Wemmert. « Efficient Region-based Classification for Whole Slide Images ». Dans Communications in Computer and Information Science, 239–56. Cham : Springer International Publishing, 2015. http://dx.doi.org/10.1007/978-3-319-25117-2_15.
Texte intégralRymarczyk, Dawid, Adam Pardyl, Jarosław Kraus, Aneta Kaczyńska, Marek Skomorowski et Bartosz Zieliński. « ProtoMIL : Multiple Instance Learning with Prototypical Parts for Whole-Slide Image Classification ». Dans Machine Learning and Knowledge Discovery in Databases, 421–36. Cham : Springer International Publishing, 2023. http://dx.doi.org/10.1007/978-3-031-26387-3_26.
Texte intégralKwok, Scotty. « Multiclass Classification of Breast Cancer in Whole-Slide Images ». Dans Lecture Notes in Computer Science, 931–40. Cham : Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-319-93000-8_106.
Texte intégralZhang, Jingwei, Xin Zhang, Ke Ma, Rajarsi Gupta, Joel Saltz, Maria Vakalopoulou et Dimitris Samaras. « Gigapixel Whole-Slide Images Classification Using Locally Supervised Learning ». Dans Lecture Notes in Computer Science, 192–201. Cham : Springer Nature Switzerland, 2022. http://dx.doi.org/10.1007/978-3-031-16434-7_19.
Texte intégralGadermayr, Michael, Martin Strauch, Barbara Mara Klinkhammer, Sonja Djudjaj, Peter Boor et Dorit Merhof. « Domain Adaptive Classification for Compensating Variability in Histopathological Whole Slide Images ». Dans Lecture Notes in Computer Science, 616–22. Cham : Springer International Publishing, 2016. http://dx.doi.org/10.1007/978-3-319-41501-7_69.
Texte intégralRen, Jian, Ilker Hacihaliloglu, Eric A. Singer, David J. Foran et Xin Qi. « Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images ». Dans Medical Image Computing and Computer Assisted Intervention – MICCAI 2018, 201–9. Cham : Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-030-00934-2_23.
Texte intégralLi, Jiahui, Wen Chen, Xiaodi Huang, Shuang Yang, Zhiqiang Hu, Qi Duan, Dimitris N. Metaxas, Hongsheng Li et Shaoting Zhang. « Hybrid Supervision Learning for Pathology Whole Slide Image Classification ». Dans Medical Image Computing and Computer Assisted Intervention – MICCAI 2021, 309–18. Cham : Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-87237-3_30.
Texte intégralDing, Saisai, Jun Wang, Juncheng Li et Jun Shi. « Multi-scale Prototypical Transformer for Whole Slide Image Classification ». Dans Lecture Notes in Computer Science, 602–11. Cham : Springer Nature Switzerland, 2023. http://dx.doi.org/10.1007/978-3-031-43987-2_58.
Texte intégralShen, Yiqing, et Jing Ke. « A Deformable CRF Model for Histopathology Whole-Slide Image Classification ». Dans Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, 500–508. Cham : Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-59722-1_48.
Texte intégralZheng, Yushan, Jun Li, Jun Shi, Fengying Xie et Zhiguo Jiang. « Kernel Attention Transformer (KAT) for Histopathology Whole Slide Image Classification ». Dans Lecture Notes in Computer Science, 283–92. Cham : Springer Nature Switzerland, 2022. http://dx.doi.org/10.1007/978-3-031-16434-7_28.
Texte intégralActes de conférences sur le sujet "Whole slide images classification"
Khvostikov, Alexander, Andrey Krylov, Ilya Mikhailov, Pavel Malkov et Natalya Danilova. « Tissue Type Recognition in Whole Slide Histological Images ». Dans 31th International Conference on Computer Graphics and Vision. Keldysh Institute of Applied Mathematics, 2021. http://dx.doi.org/10.20948/graphicon-2021-3027-496-507.
Texte intégralBug, Daniel, Julia Schuler, Friedrich Feuerhake et Dorit Merhof. « Multi-class single-label classification of histopathological whole-slide images ». Dans 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016). IEEE, 2016. http://dx.doi.org/10.1109/isbi.2016.7493527.
Texte intégralYadav, Ankur, Ovidiu Daescu, Patrick Leavey et Erin Rudzinski. « Machine Learning for Rhabdomyosarcoma Whole Slide Images Sub-type Classification ». Dans PETRA '23 : Proceedings of the 16th International Conference on PErvasive Technologies Related to Assistive Environments. New York, NY, USA : ACM, 2023. http://dx.doi.org/10.1145/3594806.3594865.
Texte intégralTavolara, Thomas E., M. Khalid Khan Niazi et Metin N. Gurcan. « Background detection affects downstream classification of Camelyon16 whole slide images ». Dans Digital and Computational Pathology, sous la direction de John E. Tomaszewski et Aaron D. Ward. SPIE, 2023. http://dx.doi.org/10.1117/12.2653882.
Texte intégralEl-Hossiny, Ahmed S., Walid Al-Atabany, Osama Hassan, Ahmed Mostafa et Sherif A. Sami. « A robust CNN classification of whole slide thyroid carcinoma images ». Dans 2021 9th International Japan-Africa Conference on Electronics, Communications, and Computations (JAC-ECC). IEEE, 2021. http://dx.doi.org/10.1109/jac-ecc54461.2021.9691433.
Texte intégralvan Zon, Mike, Nikolas Stathonikos, Willeke A. M. Blokx, Selim Komina, Sybren L. N. Maas, Josien P. W. Pluim, Paul J. van Diest et Mitko Veta. « Segmentation and Classification of Melanoma and Nevus in Whole Slide Images ». Dans 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI). IEEE, 2020. http://dx.doi.org/10.1109/isbi45749.2020.9098487.
Texte intégralGao, Zeyu, Anyu Mao, Jialun Wu, Yang Li, Chunbao Wang, Caixia Ding, Tieliang Gong et Chen Li. « Uncertainty-based Model Acceleration for Cancer Classification in Whole-Slide Images ». Dans 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2022. http://dx.doi.org/10.1109/bibm55620.2022.9995601.
Texte intégralZhang, Chaoyi, Yang Song, Donghao Zhang, Sidong Liu, Mei Chen et Weidong Cai. « Whole Slide Image Classification via Iterative Patch Labelling ». Dans 2018 25th IEEE International Conference on Image Processing (ICIP). IEEE, 2018. http://dx.doi.org/10.1109/icip.2018.8451551.
Texte intégralWetteland, Rune, Kjersti Engan, Trygve Eftestøl, Vebjørn Kvikstad et Emilius Janssen. « Multiclass Tissue Classification of Whole-Slide Histological Images using Convolutional Neural Networks ». Dans 8th International Conference on Pattern Recognition Applications and Methods. SCITEPRESS - Science and Technology Publications, 2019. http://dx.doi.org/10.5220/0007253603200327.
Texte intégralAlhammad, Sarah, Kun Zhao, Anthony Jennings, Peter Hobson, Daniel F. Smith, Brett Baker, Justin Staweno et Brian C. Lovell. « Efficient DNN-Based Classification of Whole Slide Gram Stain Images for Microbiology ». Dans 2021 Digital Image Computing : Techniques and Applications (DICTA). IEEE, 2021. http://dx.doi.org/10.1109/dicta52665.2021.9647415.
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