Littérature scientifique sur le sujet « Soil metagenomic »
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Articles de revues sur le sujet "Soil metagenomic"
Navarrete, Acacio Aparecido, Eliamar Aparecida Nascimbém Pedrinho, Luciano Takeshi Kishi, Camila Cesário Fernandes, Victoria Romancini Toledo, Rita de Cassia Félix Alvarez, Elisângela de Souza Loureiro, Leandro Nascimento Lemos, Siu Mui Tsai et Eliana Gertrudes de Macedo Lemos. « Taxonomic and nitrogen-cycling microbial community functional profiles of sugarcane and adjacent forest soils in Southeast Brazil ». MOJ Ecology & ; Environmental Sciences 6, no 4 (5 juillet 2021) : 119–25. http://dx.doi.org/10.15406/mojes.2021.06.00224.
Texte intégralMeier, Matthew J., E. Suzanne Paterson et Iain B. Lambert. « Use of Substrate-Induced Gene Expression in Metagenomic Analysis of an Aromatic Hydrocarbon-Contaminated Soil ». Applied and Environmental Microbiology 82, no 3 (20 novembre 2015) : 897–909. http://dx.doi.org/10.1128/aem.03306-15.
Texte intégralWerbin, Zoey R., Briana Hackos, Jorge Lopez-Nava, Michael C. Dietze et Jennifer M. Bhatnagar. « The National Ecological Observatory Network’s soil metagenomes : assembly and basic analysis ». F1000Research 10 (23 mars 2022) : 299. http://dx.doi.org/10.12688/f1000research.51494.2.
Texte intégralPuranik, Sampada, Rajesh Ramavadh Pal, Ravi Prabhakar More et Hemant J. Purohit. « Metagenomic approach to characterize soil microbial diversity of Phumdi at Loktak Lake ». Water Science and Technology 74, no 9 (9 août 2016) : 2075–86. http://dx.doi.org/10.2166/wst.2016.370.
Texte intégralSimon, Carola, et Rolf Daniel. « Metagenomic Analyses : Past and Future Trends ». Applied and Environmental Microbiology 77, no 4 (17 décembre 2010) : 1153–61. http://dx.doi.org/10.1128/aem.02345-10.
Texte intégralHuy, Pham Quang, Nguyen Kim Thoa et Dang Thi Cam Ha. « Diversity of reductive dechlorinating bacteria and archaea in herbicide/dioxin-contaminated soils from Bien Hoa airbase using metagenomic approach ». Vietnam Journal of Biotechnology 18, no 4 (24 mai 2021) : 773–84. http://dx.doi.org/10.15625/1811-4989/18/4/15799.
Texte intégralCastillo Villamizar, Genis Andrés, Heiko Nacke, Marc Boehning, Kristin Herz et Rolf Daniel. « Functional Metagenomics Reveals an Overlooked Diversity and Novel Features of Soil-Derived Bacterial Phosphatases and Phytases ». mBio 10, no 1 (29 janvier 2019) : e01966-18. http://dx.doi.org/10.1128/mbio.01966-18.
Texte intégralWerbin, Zoey R., Briana Hackos, Michael C. Dietze et Jennifer M. Bhatnagar. « The National Ecological Observatory Network’s soil metagenomes : assembly and basic analysis ». F1000Research 10 (19 avril 2021) : 299. http://dx.doi.org/10.12688/f1000research.51494.1.
Texte intégralDelmont, Tom O., Patrick Robe, Sébastien Cecillon, Ian M. Clark, Florentin Constancias, Pascal Simonet, Penny R. Hirsch et Timothy M. Vogel. « Accessing the Soil Metagenome for Studies of Microbial Diversity ». Applied and Environmental Microbiology 77, no 4 (23 décembre 2010) : 1315–24. http://dx.doi.org/10.1128/aem.01526-10.
Texte intégralOwen, Jeremy G., Zachary Charlop-Powers, Alexandra G. Smith, Melinda A. Ternei, Paula Y. Calle, Boojala Vijay B. Reddy, Daniel Montiel et Sean F. Brady. « Multiplexed metagenome mining using short DNA sequence tags facilitates targeted discovery of epoxyketone proteasome inhibitors ». Proceedings of the National Academy of Sciences 112, no 14 (23 mars 2015) : 4221–26. http://dx.doi.org/10.1073/pnas.1501124112.
Texte intégralThèses sur le sujet "Soil metagenomic"
Goode, Ann Marie Liles Mark Russell. « Polyketide synthase pathway discovery from soil metagenomic libraries ». Auburn, Ala., 2009. http://hdl.handle.net/10415/1805.
Texte intégralShezi, Ntombifuthi. « Bio-prospecting a Soil Metagenomic Library for Carbohydrate Active Esterases ». Thesis, Rhodes University, 2016. http://hdl.handle.net/10962/d1021266.
Texte intégralSpiegelman, Dan. « Exploring the fusion of metagenomic library and DNA microarray technologies ». Thesis, McGill University, 2006. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=98805.
Texte intégralBorsetto, Chiara. « Study and exploitation of diverse soil environments for novel natural product discovery using metagenomic approaches ». Thesis, University of Warwick, 2017. http://wrap.warwick.ac.uk/97341/.
Texte intégralAndrews, Tucker. « Ecology Of Composted Bedded Pack And Its Impact On The Udder Microbiome With An Emphasis On Mastitis Epidemiology ». ScholarWorks @ UVM, 2019. https://scholarworks.uvm.edu/graddis/989.
Texte intégralNesme, Joseph. « Characterization of antibiotic resistance genes abundance and diversity in soil bacteria by metagenomic approaches : what is the dissemination potential of the soil resistome ? » Phd thesis, Ecole Centrale de Lyon, 2014. http://tel.archives-ouvertes.fr/tel-01068359.
Texte intégralWhissell, Gavin. « Merging metagenomic and microarray technologies to explore bacterial catabolic potential of Arctic soils ». Thesis, McGill University, 2006. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=98518.
Texte intégralNOVELLO, GIORGIA. « Exploring the microbiota of Vitis vinifera cv. Pinot Noir in two vineyards with different soil management : metagenomic and metaproteomic analysis ». Doctoral thesis, Università del Piemonte Orientale, 2017. http://hdl.handle.net/11579/86922.
Texte intégralOrtiz-Ortiz, Marianyoly. « Kartchner Caverns : Habitat Scale Community Diversity and Function in a Carbonate Cave ». Diss., The University of Arizona, 2012. http://hdl.handle.net/10150/265356.
Texte intégralGrisi, Teresa Cristina Soares de Lima. « Diversidade de Bacteria e Archaea do solo do Cariri paraibano e prospecção de celulases e xilanases em clones metagenômicos e isolados bacterianos ». Universidade Federal da Paraíba, 2011. http://tede.biblioteca.ufpb.br:8080/handle/tede/342.
Texte intégralCoordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES
Soil samples of native pasture (site A) and of soil cultivated with grass Paspalum conjugatum, Bergius (site B) collected from Caatinga vegetation in the semi-arid region in Paraíba state (07°23‟27 S 36°31‟58 W) were utilized for constructing four metagenomic libraries, aiming the evaluation of microbial diversity through amplification of gene 16S rRNA of domains Bacteria and Archaea. The metagenomic DNAs were extracted by utilizing FastDNA® SPIN Kit for Soil (BIO 101), which were amplified by PCR, by using universal primers 27F / 1525R (Bacteria) and 20F / 958R (Archaea). The purified fragments were linked to vector pGEM Teasy and transformed by thermal shock in chemically competent Escherichia coli DH10B. Transformants were cultivated in LB/Ampicillin medium (100 μM/ml), IPTG (800 μg/mL) and XGal (80 μg/mL) at 37ºC/18-20 h. A selection of 250 clones of each library was performed, sequenced and after discarding the low quality sequences and chimerics, 64 and 68 sequences were obtained (Bacteria) and 89 and 141 sequences (Archaea) from soils of sites A and B, respectively, which were compared to public bank of data RDB and NCBI (similarity >95%). In site A the phylum Acidobacteria (48.4%) was the most abundant, followed by phyla Bacteroidetes (10.9%), Proteobacteria (10.9%), and Firmicutes (6.3%). In site B Proteobacteria (45.6%) was the most abundant, followed by Firmicutes (10.3%), Acidobacteria (8.8%), Bacterioidetes (7.3%); and also Cyanobacteria (1.5%) and Planctomycetes (1.5%) which were not found in site A. Among the sequences obtained, 23.4% (site A) and 25.0% (site B) were not classified (similarity <95%). In the domain Archaea the phyla found were Euryarchaeota (3.4 and 45.4%) and Crenarchaeota (2.2 and 3.5%), in sites A and B, respectively; it should be observed that 94.4% and 51.1% of the sequences were not classified (similarity <95%), between sites A and B, respectively. Larger diversity (Shannon‟s índex), richness (Chao 1), and distribution (equity index) of communities were observed at species level, in the phyla Bacteria and Archaea, in both sites. The metagenomic libraries 16S rRNA of Bacteria and Archaea, when compared by using the LIBSHUFF program, differed significantly (p<0.0001). The results of the present study showed the occurrence of a great diversity of bacteria and archaea in that semi-arid environment, with peculiar features of elevated temperature and hydric limitations, emphasizing the possibility of investigations on search of new genes and/or microbial isolates with biotechnological potential.
Amostras do solo da pastagem nativa (sítio A) e sob cultivo do capim marrequinho (Paspalum conjugatum, Bergius) (sítio B), coletadas na região semi-árida do bioma Caatinga, Paraíba, (07°23‟27 S 36°31‟58 O), foram utilizadas para construção de quatro bibliotecas de clones metagenômicos, para avaliação da diversidade microbiana pela amplificação do gene 16S rRNA dos domínios Bacteria e Archaea. Os DNA metagenômicos foram extraídos utilizando FastDNA® SPIN Kit for Soil (BIO 101), os quais foram amplificados por PCR utilizando primers universais, 27F / 1525R (Bacteria) e 20F / 958R (Archaea). Os fragmentos purificados foram ligados ao vetor pGEM Teasy e transformados por choque térmico em Escherichia coli DH10B quimicamente competente. Os transformantes foram cultivados em meio Agar LB/Ampicilina (100 μ/mL), IPTG (800 μg/μL) e XGal (80 μg/μL), a 37ºC/18-20 h. Foram selecionados 250 clones de cada biblioteca os quais foram sequenciados e após descarte das sequências de baixa qualidade e quiméricas, foram obtidas 64 e 68, 89 e 141 sequências para Bacteria e Archaea, nos solos dos sítios A e B, respectivamente, as quais foram comparadas em banco de dados públicos RDB e NCBI (≥95% de similaridade). No sítio A o filo Acidobacteria (48,4%) foi o mais abundante, seguido dos filos Bacteroidetes (10,9%), Proteobacteria (10,9%), e Firmicutes (6,3%). No sítio B Proteobacteria (45,6%) foi o de maior destaque, seguido de Firmicutes (10,3%), Acidobacteria (8,8%), Bacterioidetes (7,3%); e ainda Cyanobacteria (1,5%) e Planctomycetes (1,5%), que não foram encontrados no sítio A. Entre as sequências geradas, 23,4% (sítio A) e 25,0% (sítio B) não foram classificadas (similaridade <95%). No domínio Archaea foram encontrados os filos Euryarchaeota (3,4 e 45,4%) e Crenarchaeota (2,2 e 3,5%), nos sítios A e B, respectivamente; destacando-se que 94,4% e 51,1% das sequências não foram classificadas (similaridade <95%), entre os sítios A e B, respectivamente. Uma maior diversidade (índice de Shannon), riqueza (índice Chao 1) e distribuição (índice de equidade) das comunidades foram observadas no nível de espécies, tanto para Bacteria como para Archaea, nos dois sítios. As bibliotecas de clones metagenômicos 16S rRNA de Bacteria e Archaea, quando comparadas, utilizando-se o programa LIBSHUFF, diferiram significativamente (p<0,0001). Os resultados desse estudo mostraram a ocorrência de uma grande diversidade de bactérias e arqueas, nesse tipo de ambiente pouco estudado e com características peculiares de temperatura elevada e limitações hídricas, com possibilidade de busca de novos genes e/ou isolados microbianos, com potencial biotecnológico.
Livres sur le sujet "Soil metagenomic"
Accademia economico-agraria dei georgofili (Florence, Italy). Biodiversità e il metagenoma del terreno agrario. Firenze : Edizioni Polistampa, 2011.
Trouver le texte intégralJapan) MARCO Workshop (5th 2009 Tsukuba. Perspectives of Metagenomics in Agricultural Research : MARCO Workshop 5 : abstract : 6-7 October 2009, Tsukuba, Japan : Epochal Tsukuba (Tsukuba International Congress Center). Tsukuba, Japan : National Institute for Agro-Environmental Sciences, 2009.
Trouver le texte intégralSugitha, T. C. K., Asish K. Binodh, K. Ramasamy et U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.
Trouver le texte intégralSugitha, T. C. K., Asish K. Binodh, K. Ramasamy et U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.
Trouver le texte intégralSugitha, T. C. K., Asish K. Binodh, K. Ramasamy et U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.
Trouver le texte intégralSugitha, T. C. K., Asish K. Binodh, K. Ramasamy et U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.
Trouver le texte intégralSugitha, T. C. K., Asish K. Binodh, K. Ramasamy et U. Sivakumar. Soil Metagenomics. Taylor & Francis Group, 2020.
Trouver le texte intégralTaberlet, Pierre, Aurélie Bonin, Lucie Zinger et Eric Coissac. Environmental DNA for functional diversity. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0010.
Texte intégralTaberlet, Pierre, Aurélie Bonin, Lucie Zinger et Eric Coissac. Introduction to environmental DNA (eDNA). Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0001.
Texte intégralKirchman, David L. Genomes and meta-omics for microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0005.
Texte intégralChapitres de livres sur le sujet "Soil metagenomic"
Kathi, Srujana. « Emerging Metagenomic Strategies for Assessing Xenobiotic Contaminated Sites ». Dans Soil Biology, 89–100. Cham : Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-47744-2_7.
Texte intégralDelmont, Tom O., Laure Franqueville, Samuel Jacquiod, Pascal Simonet et Timothy M. Vogel. « Soil Metagenomic Exploration of the Rare Biosphere ». Dans Handbook of Molecular Microbial Ecology I, 287–98. Hoboken, NJ, USA : John Wiley & Sons, Inc., 2011. http://dx.doi.org/10.1002/9781118010518.ch33.
Texte intégralUnno, Yusuke, et Takuro Shinano. « Metagenomic Analysis of the Rhizosphere Soil Microbial Community ». Dans Molecular Microbial Ecology of the Rhizosphere, 1099–103. Hoboken, NJ, USA : John Wiley & Sons, Inc., 2013. http://dx.doi.org/10.1002/9781118297674.ch104.
Texte intégralMisra, Sankalp, Vijay Kant Dixit, Swapnil Pandey, Shashank Kumar Mishra, Nikita Bisht et Puneet Singh Chauhan. « Exploration of Soil Resistome Through a Metagenomic Approach ». Dans Antibacterial Drug Discovery to Combat MDR, 313–25. Singapore : Springer Singapore, 2019. http://dx.doi.org/10.1007/978-981-13-9871-1_15.
Texte intégralParsley, Larissa C., Chengcang Wu, David Mead, Robert M. Goodman et Mark R. Liles. « Soil Microbial DNA Purification Strategies for Multiple Metagenomic Applications ». Dans Handbook of Molecular Microbial Ecology II, 109–15. Hoboken, NJ, USA : John Wiley & Sons, Inc., 2011. http://dx.doi.org/10.1002/9781118010549.ch11.
Texte intégralWommack, K. Eric, Sharath Srinivasiah, Mark R. Liles, Jaysheel Bhavsar, Shellie Bench, Kurt E. Williamson et Shawn W. Polson. « Metagenomic Contrasts of Viruses in Soil and Aquatic Environments ». Dans Handbook of Molecular Microbial Ecology II, 25–36. Hoboken, NJ, USA : John Wiley & Sons, Inc., 2011. http://dx.doi.org/10.1002/9781118010549.ch4.
Texte intégralRajesh, T., J. Rajendhran, P. Lavanya Pushpam et P. Gunasekaran. « Methods in Metagenomic DNA, RNA, and Protein Isolation from Soil ». Dans Handbook of Molecular Microbial Ecology II, 93–107. Hoboken, NJ, USA : John Wiley & Sons, Inc., 2011. http://dx.doi.org/10.1002/9781118010549.ch10.
Texte intégralColagiero, Mariantonietta, Isabella Pentimone, Laura Cristina Rosso et Aurelio Ciancio. « A Metagenomic Study on the Effect of Aboveground Plant Cover on Soil Bacterial Diversity ». Dans Soil Biological Communities and Ecosystem Resilience, 97–106. Cham : Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-63336-7_6.
Texte intégralKielak, Anna M., et George A. Kowalchuk. « Targeting Major Soil-Borne Bacterial Lineages Using Large-Insert Metagenomic Approaches ». Dans Handbook of Molecular Microbial Ecology II, 135–41. Hoboken, NJ, USA : John Wiley & Sons, Inc., 2011. http://dx.doi.org/10.1002/9781118010549.ch14.
Texte intégralPershina, E. V., E. E. Andronov, A. G. Pinaev et N. A. Provorov. « Recent Advances and Perspectives in Metagenomic Studies of Soil Microbial Communities ». Dans Management of Microbial Resources in the Environment, 141–66. Dordrecht : Springer Netherlands, 2013. http://dx.doi.org/10.1007/978-94-007-5931-2_7.
Texte intégralActes de conférences sur le sujet "Soil metagenomic"
Melnichuk, T. N., A. Yu Egovtseva, S. F. Abdurashitov, E. R. Abdurashytova, E. N. Turin, V. V. Gorelova et A. A. Zubochenko. « Microbiocenosis of southern chernozem under the influence of no-till ». Dans CURRENT STATE, PROBLEMS AND PROSPECTS OF THE DEVELOPMENT OF AGRARIAN SCIENCE. Federal State Budget Scientific Institution “Research Institute of Agriculture of Crimea”, 2020. http://dx.doi.org/10.33952/2542-0720-2020-5-9-10-114.
Texte intégralTereshchenko, Natalya, Tatiana Zyubanova, Elena Akimova et Oksana Minaeva. « The assessment of soil suitability for reproduction of healthy seed potatoes based on metagenomic analysis of the soil microbial community and the level of soil suppressive activity ». Dans MODERN SYNTHETIC METHODOLOGIES FOR CREATING DRUGS AND FUNCTIONAL MATERIALS (MOSM2020) : PROCEEDINGS OF THE IV INTERNATIONAL CONFERENCE. AIP Publishing, 2021. http://dx.doi.org/10.1063/5.0069257.
Texte intégralTaura, Usman, Sara Al-Araimi, Saif Al-Bahry, Yahya Al-Wahaibi et Lujain Al-Rashdi. « Isolation of Autochthonous Consortium for the Bioremediation of Oil Contaminated Produced Water ». Dans SPE Nigeria Annual International Conference and Exhibition. SPE, 2022. http://dx.doi.org/10.2118/212024-ms.
Texte intégralKawulok, Jolanta, et Michal Kawulok. « Environmental Metagenome Classification for Soil-based Forensic Analysis ». Dans 9th International Conference on Bioinformatics Models, Methods and Algorithms. SCITEPRESS - Science and Technology Publications, 2018. http://dx.doi.org/10.5220/0006659301820187.
Texte intégralDzombak, Rebecca M., et Nathan D. Sheldon. « USING PAIRED GEOCHEMISTRY AND METAGENOMICS TO EXPLORE SOIL CRUSTS AS ANCIENT TERRESTRIAL ANALOGUES ». Dans 54th Annual GSA North-Central Section Meeting - 2020. Geological Society of America, 2020. http://dx.doi.org/10.1130/abs/2020nc-347938.
Texte intégralRahman, Jessica S., Jinyan Li, Juanying Xie, Shoshana Fogelman et Michael Blumenstein. « Connectivity Based Method for Clustering Microbial Communities from Metagenomics Data of Water and Soil Samples ». Dans 2018 International Joint Conference on Neural Networks (IJCNN). IEEE, 2018. http://dx.doi.org/10.1109/ijcnn.2018.8489220.
Texte intégral« Fungal metagenome of Chernevaya Taiga soils : taxonomic composition, differential abundance and factors related to plant gigantism ». Dans Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Novosibirsk ICG SB RAS 2021, 2021. http://dx.doi.org/10.18699/plantgen2021-167.
Texte intégralRapports d'organisations sur le sujet "Soil metagenomic"
House, Geoffrey Lehman, Laverne A. Gallegos-Graves et Patrick Sam Guy Chain. Overview of the Soil Metagenomics and Carbon Cycling SFA Fungal Collection. Office of Scientific and Technical Information (OSTI), novembre 2018. http://dx.doi.org/10.2172/1483488.
Texte intégralCrowley, David E., Dror Minz et Yitzhak Hadar. Shaping Plant Beneficial Rhizosphere Communities. United States Department of Agriculture, juillet 2013. http://dx.doi.org/10.32747/2013.7594387.bard.
Texte intégralZhou, Jizhong, et Liyou Wu. From Structure to Functions : Metagenomics-Enabled Predictive Understanding of Soil Microbial Feedbacks to Climate Change. Office of Scientific and Technical Information (OSTI), novembre 2019. http://dx.doi.org/10.2172/1574023.
Texte intégralMinz, Dror, Stefan J. Green, Noa Sela, Yitzhak Hadar, Janet Jansson et Steven Lindow. Soil and rhizosphere microbiome response to treated waste water irrigation. United States Department of Agriculture, janvier 2013. http://dx.doi.org/10.32747/2013.7598153.bard.
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