Articles de revues : « Physiological, Algal Protein »

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Zivanovic, Ana, et Danielle Skropeta. « c-AMP Dependent Protein Kinase a Inhibitory Activity of Six Algal Extracts from South Eastern Australia and Their Fatty Acid Composition ». Natural Product Communications 7, n^o 7 (juillet 2012) : 1934578X1200700. http://dx.doi.org/10.1177/1934578x1200700731.

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c-AMP Dependent protein kinase (protein kinase A, PKA) is an important enzyme involved in the regulation of an increasing number of physiological processes including immune function, cardiovascular disease, memory disorders and cancer. The objective of this study was to evaluate the PKA inhibitory activity of a range of algal extracts, along with their fatty acid composition. Six algal species were investigated including two Chlorophyta ( Codium dimorphum and Ulva lactuca), two Phaeophyta ( Phyllospora comosa and Sargassum sp.) and two Rhodophyta ( Prionitis linearis and Corallina vancouveriensis), with the order of PKA inhibitory activity of their extracts identified as follows: brown seaweeds > red seaweeds > green seaweeds with the brown alga Sargassum sp. exhibiting the highest PKA inhibitory activity (84% at 100 μg/mL). GC/MS analysis identified a total of 18 fatty acids in the six algal extracts accounting for 72-87% of each extract, with hexadecanoic acid and 9,12-octadecadienoic acid as the dominant components. The most active extract ( Sargassum sp.) also contained the highest percentage of the saturated C14:0 fatty acid (12.8% of the total extract), which is a known to inhibit PKA. These results provide the first description of the PKA inhibitory activity of marine algae along with the first description of the fatty acid composition of these six algal species from South Eastern Australian waters. Importantly, this study reveals that abundant and readily available marine algae are a new and relatively unexplored source of PKA inhibitory compounds.

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Wang, Jun, Guoming Zeng, Fei Wang, Xin Huang, Yan Li, Dong Liang, Maolan Zhang et Da Sun. « Study on the Algae Lysis Method of White Rot Fungi Algae Control System ». Water 14, n^o 6 (14 mars 2022) : 903. http://dx.doi.org/10.3390/w14060903.

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At present, there are few studies on known bacterial species and even less on fungi in biological algae control technology. In this paper, the green eutrophic shallow water lake Scenedesmus quadricauda (Turpin) was used as the research object, and white rot fungi, which has a high removal effect on water pollutants, algae and biological toxins, was used for algae control. The extent of the removal effect, physiological characteristics and the internal functional groups of the algae cells in the white rot fungi solution, the supernatant of the white rot fungi solution after centrifugation and the sterilized white rot fungi solution were investigated. The results showed that the best algae solubilization effect of the algae control system was achieved at 250 mg/L, with 8 mg/L of dissolved oxygen and a hydraulic retention time of 48 h. The average algae lysis rate was 85.48%, the average dehydrogenase activity reduction rate was 59.23%, the average soluble protein reduction rate was 65.16% and the average malondialdehyde content increased to 0.128 umol/L. After treatment with the white rot algae control system, the spatial structure of the Turpin cells was severely disrupted, and significant lysis occurred within the algal cells, forcing the release of intracellularly soluble substances, and reducing the dehydrogenase activity of the Turpin cells, thus inhibiting the growth activity of the algae cells. A further reduction in the soluble protein content reduces the nutrients required for the growth of Turpin, exacerbating the rate of reduction in the physiological metabolic activity of the Turpin cells and, ultimately, the inhibition or killing of the algal cells. The results of this research may provide theoretical guidance for the microbial control of water eutrophication; however, whether there will be secondary pollution after the algae dissolution of this process is worthy of further study.

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Liu, Cuixia, Zhiquan Hu, Jiaolan Zuo, Mian Hu et Bo Xiao. « Removal of Zn(II) from simulated wastewater using an algal biofilm ». Water Science and Technology 70, n^o 8 (9 septembre 2014) : 1383–90. http://dx.doi.org/10.2166/wst.2014.380.

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An algal biofilm was employed as a novel kind of adsorbing material to remove Zn(II) from simulated wastewater. The algal biofilm system formed by Oedogonium sp. was operated in a dynamic mode for a period of 14 days with an initial Zn(II) concentration of 10 mg/L. The average effluent Zn(II) concentration was 0.247 mg/L and the average removal efficiency reached 97.7%. The effects of Zn(II) on key algal physiological and biochemical indices such as chlorophyll content, nitrate reductase and superoxide dismutase activity, extracellular polysaccharides (EPS), and soluble protein levels were studied. Our results showed that the algal biofilm could adapt to the simulated wastewater containing Zn(II). Scanning electron microscope and Fourier transform infrared spectroscopy analyses of algal biofilm revealed the presence of carboxyl, amino, and sulphonate groups, which were the main functional groups of EPS and proteins, and these were likely responsible for biosorption of the Zn(II) ions.

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Wood, A., J. Scheepers et M. Hills. « Combined Artificial Wetland and High Rate Algal Pond for Wastewater Treatment and Protein Production ». Water Science and Technology 21, n^o 6-7 (1 juin 1989) : 659–68. http://dx.doi.org/10.2166/wst.1989.0268.

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The potential to optimize wastewater utilization, whilst achieving satisfactory nutrient removal has been investigated through a simple system combining an Artificial Wetland with a High Rate Algal Pond (HRAP). Receiving septic sewage at a surface loading equivalent to 13.5 cm/day the Wetland achieved COD removals of 59.2%, NH4−N of 34,6%, PO4−P of 31.9% and SS of 78%. The HRAP selectively cultivated an easily harvestable filamentous green alga through a combination of short hydraulic residence times (< days), and microscreens as selectors over the effluent stream. Passage of the effluent through this stage permitted COD removal to increase to 79.4%, NH4−N to 82.8% and PO4−P to 54.1%, whilst generating a highly proteinaceous (42% by wt) biomass at a rate of approximately 50 tons/hectare/year. This paper discusses the performance of the pilot scale facility over a twelve month period, identifying biological and operational influences on the system, and the physiological mechanics by which the wastewater treatment is accomplished.

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Langlotz, Petra, Wolfgang Wagner et Hartmut Follmann. « Green Algae (Scenedesmus obliquus) Contain Three Thioredoxins of Regular Size ». Zeitschrift für Naturforschung C 41, n^o 11-12 (1 décembre 1986) : 979–87. http://dx.doi.org/10.1515/znc-1986-11-1205.

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Abstract A comprehensive thioredoxin profile of Scenedesmus obliquus has been established by chromatography of heat-stable protein extracts on five different ion exchange, gel permeation, and affinity chromatography columns and using three different assay systems including homologous S. obliquus ribonucleotide reductase, chloroplast fructose-bis-phosphatase, and NADP malate dehydrogenase. Four different thioredoxins were purified to homogeneity. Besides the large chloroplast thioredoxin f described previously, the algae contain three proteins of molecular weight 12,000 designated thioredoxin I, II, and III. They bind specifically to antibodies against E. coli thioredoxin. Chloroplast-free mutant algae (strain C-2A′) lack thioredoxin f but contain all three regular thioredoxins. Species I and II have very similar amino acid composition and enzyme-stimulating activities. They are considered cytoplasmic thioredoxins which serve as hydrogen donors in algal deoxyribonucleotide biosynthesis. Thioredoxin III is of low activity towards all the presently tested enzymes and its physiological role remains unknown; its role as a glutaredoxin could be excluded. All non-photosynthetic plant cells analyzed so far (mutant algae, seeds, and roots) contain a set of three regular-size thioredoxins.

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Gao, Yifan, Jia Feng, Junping Lv, Qi Liu, Fangru Nan, Xudong Liu et Shulian Xie. « Physiological Changes of Parachlorella Kessleri TY02 in Lipid Accumulation under Nitrogen Stress ». International Journal of Environmental Research and Public Health 16, n^o 7 (2 avril 2019) : 1188. http://dx.doi.org/10.3390/ijerph16071188.

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In order to study the effects of nitrogen stress on the lipid synthesis of Parachlorella kessleri TY02 and to understand the changes in growth, photosynthetic pigments, total protein and total carbohydrate contents during lipid accumulation, the cells of the strain were cultured in nitrogen-deficient (N−) and nitrogen-rich (N+) media for one week. Changes in cell growth, chlorophyll content, chlorophyll fluorescence parameters, neutral lipid and total lipid content, total protein content and total carbohydrate content were measured and analyzed. The results showed that, under nitrogen stress, the algal strain grew slowly, and chlorophyll and total protein contents decreased, while total carbohydrate and total lipid contents increased. This indicated that, under nitrogen stress, most of the carbon flowed to the synthesis of lipids and carbohydrates. Meanwhile, reducing the nitrogen content was a relatively economical and easy to operate method of promoting lipid accumulation.

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Delaux, Pierre-Marc, Guru V. Radhakrishnan, Dhileepkumar Jayaraman, Jitender Cheema, Mathilde Malbreil, Jeremy D. Volkening, Hiroyuki Sekimoto et al. « Algal ancestor of land plants was preadapted for symbiosis ». Proceedings of the National Academy of Sciences 112, n^o 43 (5 octobre 2015) : 13390–95. http://dx.doi.org/10.1073/pnas.1515426112.

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Colonization of land by plants was a major transition on Earth, but the developmental and genetic innovations required for this transition remain unknown. Physiological studies and the fossil record strongly suggest that the ability of the first land plants to form symbiotic associations with beneficial fungi was one of these critical innovations. In angiosperms, genes required for the perception and transduction of diffusible fungal signals for root colonization and for nutrient exchange have been characterized. However, the origin of these genes and their potential correlation with land colonization remain elusive. A comprehensive phylogenetic analysis of 259 transcriptomes and 10 green algal and basal land plant genomes, coupled with the characterization of the evolutionary path leading to the appearance of a key regulator, a calcium- and calmodulin-dependent protein kinase, showed that the symbiotic signaling pathway predated the first land plants. In contrast, downstream genes required for root colonization and their specific expression pattern probably appeared subsequent to the colonization of land. We conclude that the most recent common ancestor of extant land plants and green algae was preadapted for symbiotic associations. Subsequent improvement of this precursor stage in early land plants through rounds of gene duplication led to the acquisition of additional pathways and the ability to form a fully functional arbuscular mycorrhizal symbiosis.

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Machado, Glauco B. O., Fosca P. P. Leite et Erik E. Sotka. « Nutrition of marine mesograzers : integrating feeding behavior, nutrient intake and performance of an herbivorous amphipod ». PeerJ 6 (9 novembre 2018) : e5929. http://dx.doi.org/10.7717/peerj.5929.

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Consumers can regulate the acquisition and use of nutrients through behavioral and physiological mechanisms. Here, we present an experimental approach that simultaneously integrates multiple nutritional traits, feeding assays, and juvenile performance to assess whether a marine herbivore (the amphipod Ampithoe valida) regulates the intake of elements (carbon and nitrogen), macronutrients (protein and non-protein) or both when offered freeze-dried tissues of seaweeds varying in nutritional content. We assessed behavioral regulation of nutrients in three ways. First, during no-choice assays, we found that amphipods ingested similar amounts of carbon, but not nitrogen, non-protein and protein, across algal diets. Second, herbivore intake rates of carbon, protein and non-protein components across no-choice assays was similar to intake rates when offered a choice of foods. Third, variation in intake rates of carbon and non-protein components among algal diets was significantly greater than was tissue content of these components, while variation in intake rates of nitrogen was significantly lower; differences in protein intake variation was equivocal. While these analytical approaches are not uniformly consistent, carbon and nitrogen seem to emerge as the nutrient components that are more strongly regulated by A. valida. Juveniles reared on single diets shown patterns of survivorship, growth and reproduction that could not be predicted by these feeding preferences, nor nutrient content. We conclude that an integrative approach that considers the intake of multiple nutrients potentially yields insights into feeding behavior and its performance consequences.

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Astier, Jeremy, Arnaud Mounier, Jérôme Santolini, Sylvain Jeandroz et David Wendehenne. « The evolution of nitric oxide signalling diverges between animal and green lineages ». Journal of Experimental Botany 70, n^o 17 (1 mars 2019) : 4355–64. http://dx.doi.org/10.1093/jxb/erz088.

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AbstractNitric oxide (NO) is a ubiquitous signalling molecule with widespread distribution in prokaryotes and eukaryotes where it is involved in countless physiological processes. While the mechanisms governing nitric oxide (NO) synthesis and signalling are well established in animals, the situation is less clear in the green lineage. Recent investigations have shown that NO synthase, the major enzymatic source for NO in animals, is absent in land plants but present in a limited number of algae. The first detailed analysis highlighted that these new NO synthases are functional but display specific structural features and probably original catalytic activities. Completing this picture, analyses were undertaken in order to investigate whether major components of the prototypic NO/cyclic GMP signalling cascades mediating many physiological effects of NO in animals were also present in plants. Only a few homologues of soluble guanylate cyclases, cGMP-dependent protein kinases, cyclic nucleotide-gated channels, and cGMP-regulated phosphodiesterases were identified in some algal species and their presence did not correlate with that of NO synthases. In contrast, S-nitrosoglutathione reductase, a critical regulator of S-nitrosothiols, was recurrently found. Overall, these findings highlight that plants do not mediate NO signalling through the classical NO/cGMP signalling module and support the concept that S-nitrosation is a ubiquitous NO-dependent signalling mechanism.

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CHIA, MATHIAS A., ANA T. LOMBARDI et MARIA DA GRACA G. MELAO. « Growth and biochemical composition of Chlorella vulgaris in different growth media ». Anais da Academia Brasileira de Ciências 85, n^o 4 (11 octobre 2013) : 1427–38. http://dx.doi.org/10.1590/0001-3765201393312.

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The need for clean and low-cost algae production demands for investigations on algal physiological response under different growth conditions. In this research, we investigated the growth, biomass production and biochemical composition of Chlorella vulgaris using semi-continuous cultures employing three growth media (LC Oligo, Chu 10 and WC media). The highest cell density was obtained in LC Oligo, while the lowest in Chu medium. Chlorophyll a, carbohydrate and protein concentrations and yield were highest in Chu and LC Oligo media. Lipid class analysis showed that hydrocarbons (HC), sterol esthers (SE), free fatty acids (FFA), aliphatic alcohols (ALC), acetone mobile polar lipids (AMPL) and phospholipids (PL) concentrations and yields were highest in the Chu medium. Triglyceride (TAG) and sterol (ST) concentrations were highest in the LC Oligo medium. The results suggested that for cost effective cultivation, LC Oligo medium is the best choice among those studied, as it saved the cost of buying vitamins and EDTA associated with the other growth media, while at the same time resulted in the best growth performance and biomass production.

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Rattner, Barnett A., G. Michael Haramis, Diane S. Chu, Christine M. Bunck et Colin G. Scanes. « Growth and physiological condition of black ducks reared on acidified wetlands ». Canadian Journal of Zoology 65, n^o 12 (1 décembre 1987) : 2953–58. http://dx.doi.org/10.1139/z87-448.

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Acid deposition has been identified as one of several possible factors contributing to the decline of some waterfowl populations in North America. In an effort to examine the effects of acidification on black duck (Anas rubripes) recruitment, growth and physiological condition were monitored in ducklings foraging for a 10–day trial (days 10–20 of life) on acidified (pH 5.0) and circumneutral (pH 6.8) fish-free emergent wetlands. Acidification of these wetlands suppressed phytoplankton and algal growth, and reduced invertebrate biomass. Ducklings maintained on acidified wetlands grew poorly compared with ducklings reared on circumneutral wetlands, as evidenced by lower final body weight and culmen and tarsus length. Plasma growth hormone concentration was elevated and triiodothyronine levels were lower in stunted ducklings, in part substantiating impairment of growth-regulating processes. Ducklings exhibiting poor growth tended to have lower hematocrit, lower plasma protein, glucose, and cholesterol concentrations, and higher uric acid levels, presumably reflecting alterations in metabolism and development due to inanition. These findings suggest that acid deposition may lower food production in wetlands and ultimately impair duckling growth, condition, and survival.

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Silva, Carla O., Sara C. Novais, Amadeu M. V. M. Soares, Carlos Barata et Marco F. L. Lemos. « Impacts of the Invasive Seaweed Asparagopsis armata Exudate on Energetic Metabolism of Rock Pool Invertebrates ». Toxins 13, n^o 1 (25 décembre 2020) : 15. http://dx.doi.org/10.3390/toxins13010015.

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The marine red algae Asparagopsis armata is an invasive species gaining competitive advantage by releasing large amounts of toxic compounds to the surrounding invaded area. The main objective of this study was to evaluate the effects of this invasive seaweed on marine invertebrates by exposing the common prawn Palaemon elegans and the marine snail Gibbula umbilicalis to the exudate of this seaweed. The seaweed was collected and placed in a tank for 12 h in the dark in a 1:10 ratio. Afterwards the seawater medium containing the released secondary metabolites was collected for further testing. Lethal and sublethal effects of A. armata were investigated. Biochemical biomarker responses associated with energy metabolism (lactate dehydrogenase, LDH; electron transport system activity, ETS; lipid, protein and carbohydrate content) were analysed. The biomarker responses showed physiological status impairment of invertebrates after exposure to low concentrations of this algal exudate. The highest concentrations of exudate significantly increased lipid content in both organisms. In the shrimp, protein content, ETS, and LDH were also significantly increased. By contrast, these parameters were significantly decreased in G. umbilicalis. A behavioural impairment was also observed in G. umbilicalis exposed to A. armata exudate, reducing feeding consumption. These results represent an important step in the research of natural toxic exudates released to the environment and prospective effects of this seaweed in invaded communities under increasing global change scenarios.

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Sun, Ming-Ming, Jin Sun, Jian-Wen Qiu, Hongmei Jing et Hongbin Liu. « Characterization of the Proteomic Profiles of the Brown Tide Alga Aureoumbra lagunensis under Phosphate- and Nitrogen-Limiting Conditions and of Its Phosphate Limitation-Specific Protein with Alkaline Phosphatase Activity ». Applied and Environmental Microbiology 78, n^o 6 (13 janvier 2012) : 2025–33. http://dx.doi.org/10.1128/aem.05755-11.

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ABSTRACTThe persistent bloom of the brown tide algaAureoumbra lagunensishas been reported in coastal embayments along southern Texas, but the molecular mechanisms that sustain such algal bloom are unknown. We compared the proteome and physiological parameters ofA. lagunensisgrown in phosphate (P)-depleted, P- and nitrogen (N)-depleted, and nutrient-replete cultures. For the proteomic analysis, samples from three conditions were subjected to two-dimensional electrophoresis and tandem mass spectrometry analysis. Because of the paucity of genomic resources in this species, ade novocross-species protein search was used to identify the differentially expressed proteins, which revealed their involvement in several key biological processes, such as chlorophyll synthesis, antioxidative protection, and protein degradation, suggesting thatA. lagunensismay adopt intracellular nutrient compensation, extracellular organic nutrient regeneration, and damage protection to thrive in P-depleted environments. A highly abundant P limitation-specific protein, tentatively identified as a putative alkaline phosphatase, was further characterized by enzyme activity assay on nondenaturing gel and confocal microscopy, which confirmed that this protein has alkaline phosphatase activity, is a cytoplasmic protein, and is closely associated with the cell membrane. The abundance, location, and functional expression of this alkaline phosphatase all indicate the importance of organic P utilization forA. lagunensisunder P limitation and the possible role of this alkaline phosphatase in regenerating phosphate from extra- or intracellular organic phosphorus.

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Li, Yang, Renja Romey-Glüsing, Navid Tahan Zadeh, Jakob von Frieling, Julia Hoffmann, Patricia Huebbe, Iris Bruchhaus, Gerald Rimbach, Christine Fink et Thomas Roeder. « Furbellow (Brown Algae) Extract Increases Lifespan in Drosophila by Interfering with TOR-Signaling ». Nutrients 12, n^o 4 (22 avril 2020) : 1172. http://dx.doi.org/10.3390/nu12041172.

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Algal products are well known for their health promoting effects. Nonetheless, an in depth understanding of the underlying molecular mechanisms is still only fragmentary. Here, we show that aqueous furbelow extracts (brown algae, Saccorhiza polyschides) lengthen the life of both sexes of the fruit fly Drosophila melanogaster substantially, if used as nutritional additives to conventional food. This life prolonging effect became even more pronounced in the presence of stressors, such as high-fat dieting of living under drought conditions. Application of the extracts did not change food intake, excretion, or other major physiological parameters. Nevertheless, effects on the intestinal microbiota were observed, leading to an increased species richness, which is usually associated with healthy conditions. Lifespan extension was not observed in target of rapamycin (TOR)-deficient animals, implying that functional TOR signaling is necessary to unfold the positive effects of brown algae extract (BAE) on this important trait. The lack of life lengthening in animals with deregulated TOR signaling exclusively targeted to body fat showed that this major energy storage organ is instrumental for transmitting these effects. In addition, expression of Imaginal morphogenesis protein-Late 2 (Imp-L2), an effective inhibitor of insulin signaling implies that BAE exerts their positive effects through interaction with the tightly interwoven TOR- and insulin-signaling systems, although insulin levels were not directly affected by this intervention.

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Arb, C. von, et C. Brunold. « Lichen physiology and air pollution. I. Physiological responses of in situ Parmelia sulcata among air pollution zones within Biel, Switzerland ». Canadian Journal of Botany 68, n^o 1 (1 janvier 1990) : 35–42. http://dx.doi.org/10.1139/b90-006.

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Parmelia sulcata, a rather pollution resistant lichen species, was collected at 13 locations with different levels of air pollution from its natural habitat in the city and the suburbs of Biel, Switzerland, The growth rate, net and gross photosynthesis, release of C-assimilates, dark respiration, and protein and chlorophyll content were determined. Growth rates differed maximally by a factor of 7 with the lowest rates at fee central and most polluted locations of the city. The chlorophyll content was highest in the center and maximally four times lower at the suburban locations. The protein content, dark respiration, and net and gross photosynthesis did not differ significantly between the 13 locations when based on the dry weight, but the percentage of C-assimilates released by the algal cells was up to 15 times lower in the center. These results are different from previous reports where the transplant technique had been used, indicating that the long term effects of air pollution on the lichen metabolism under natural conditions are not the same. Key words: photosynthesis, C assimilation, growth, chlorophyll, dark respiration.

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Bi, Wang et Zhang. « Omics Analysis for Dinoflagellates Biology Research ». Microorganisms 7, n^o 9 (23 août 2019) : 288. http://dx.doi.org/10.3390/microorganisms7090288.

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Dinoflagellates are important primary producers for marine ecosystems and are also responsible for certain essential components in human foods. However, they are also notorious for their ability to form harmful algal blooms, and cause shellfish poisoning. Although much work has been devoted to dinoflagellates in recent decades, our understanding of them at a molecular level is still limited owing to some of their challenging biological properties, such as large genome size, permanently condensed liquid-crystalline chromosomes, and the 10-fold lower ratio of protein to DNA than other eukaryotic species. In recent years, omics technologies, such as genomics, transcriptomics, proteomics, and metabolomics, have been applied to the study of marine dinoflagellates and have uncovered many new physiological and metabolic characteristics of dinoflagellates. In this article, we review recent application of omics technologies in revealing some of the unusual features of dinoflagellate genomes and molecular mechanisms relevant to their biology, including the mechanism of harmful algal bloom formations, toxin biosynthesis, symbiosis, lipid biosynthesis, as well as species identification and evolution. We also discuss the challenges and provide prospective further study directions and applications of dinoflagellates.

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Fanesi, Andrea, Heiko Wagner et Christian Wilhelm. « Phytoplankton growth rate modelling : can spectroscopic cell chemotyping be superior to physiological predictors ? » Proceedings of the Royal Society B : Biological Sciences 284, n^o 1848 (8 février 2017) : 20161956. http://dx.doi.org/10.1098/rspb.2016.1956.

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Climate change has a strong impact on phytoplankton communities and water quality. However, the development of robust techniques to assess phytoplankton growth is still in progress. In this study, the growth rate of phytoplankton cells grown at different temperatures was modelled based on conventional physiological traits (e.g. chlorophyll, carbon and photosynthetic parameters) using the partial least square regression (PLSR) algorithm and compared with a new approach combining Fourier transform infrared-spectroscopy and PLSR. In this second model, it is assumed that the macromolecular composition of phytoplankton cells represents an intracellular marker for growth. The models have comparable high predictive power ( R 2 > 0.8) and low error in predicting new observations. Interestingly, not all of the predictors present the same weight in the modelling of growth rate. A set of specific parameters, such as non-photochemical fluorescence quenching (NPQ) and the quantum yield of carbon production in the first model, and lipid, protein and carbohydrate contents for the second one, strongly covary with cell growth rate regardless of the taxonomic position of the phytoplankton species investigated. This reflects a set of specific physiological adjustments covarying with growth rate, conserved among taxonomically distant algal species that might be used as guidelines for the improvement of modern primary production models. The high predictive power of both sets of cellular traits for growth rate is of great importance for applied phycological studies. Our approach may find application as a quality control tool for the monitoring of phytoplankton populations in natural communities or in photobioreactors.

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Ratcliffe, Sarah, Ravin Jugdaohsingh, Julien Vivancos, Alan Marron, Rupesh Deshmukh, Jian Feng Ma, Namiki Mitani-Ueno et al. « Identification of a mammalian silicon transporter ». American Journal of Physiology-Cell Physiology 312, n^o 5 (1 mai 2017) : C550—C561. http://dx.doi.org/10.1152/ajpcell.00219.2015.

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Silicon (Si) has long been known to play a major physiological and structural role in certain organisms, including diatoms, sponges, and many higher plants, leading to the recent identification of multiple proteins responsible for Si transport in a range of algal and plant species. In mammals, despite several convincing studies suggesting that silicon is an important factor in bone development and connective tissue health, there is a critical lack of understanding about the biochemical pathways that enable Si homeostasis. Here we report the identification of a mammalian efflux Si transporter, namely Slc34a2 (also termed NaPiIIb), a known sodium-phosphate cotransporter, which was upregulated in rat kidney following chronic dietary Si deprivation. Normal rat renal epithelium demonstrated punctate expression of Slc34a2, and when the protein was heterologously expressed in Xenopus laevis oocytes, Si efflux activity (i.e., movement of Si out of cells) was induced and was quantitatively similar to that induced by the known plant Si transporter OsLsi2 in the same expression system. Interestingly, Si efflux appeared saturable over time, but it did not vary as a function of extracellular [Formula: see text] or Na+ concentration, suggesting that Slc34a2 harbors a functionally independent transport site for Si operating in the reverse direction to the site for phosphate. Indeed, in rats with dietary Si depletion-induced upregulation of transporter expression, there was increased urinary phosphate excretion. This is the first evidence of an active Si transport protein in mammals and points towards an important role for Si in vertebrates and explains interactions between dietary phosphate and silicon.

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Pichereau, Vianney, Jean-Alain Pocard, Jack Hamelin, Carlos Blanco et Théophile Bernard. « Differential Effects of Dimethylsulfoniopropionate, Dimethylsulfonioacetate, and Other S-Methylated Compounds on the Growth of Sinorhizobium meliloti at Low and High Osmolarities ». Applied and Environmental Microbiology 64, n^o 4 (1 avril 1998) : 1420–29. http://dx.doi.org/10.1128/aem.64.4.1420-1429.1998.

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ABSTRACT An extract from the marine alga Ulva lactuca was highly osmoprotective in salt-stressed cultures of Sinorhizobium meliloti 102F34. This beneficial activity was due to algal 3-dimethylsulfoniopropionate (DMSP), which was accumulated as a dominant compatible solute and strongly reduced the accumulation of endogenous osmolytes in stressed cells. Synthetic DMSP also acted as a powerful osmoprotectant and was accumulated as a nonmetabolizable cytosolic osmolyte (up to a concentration of 1,400 nmol/mg of protein) throughout the growth cycles of the stressed cultures. In contrast, 2-dimethylsulfonioacetate (DMSA), the sulfonium analog of the universal osmoprotectant glycine betaine (GB), was highly toxic to unstressed cells and was not osmoprotective in stressed cells of wild-type strains of S. meliloti. Nonetheless, the transport and accumulation of DMSA, like the transport and accumulation of DMSP and GB, were osmoregulated and increased fourfold in stressed cells of strain 102F34. Strikingly, DMSA was not toxic and became highly osmoprotective in mutants that are impaired in their ability to demethylate GB and DMSA. Furthermore, 2-methylthioacetate and thioglycolic acid (TGA), the demethylation products of DMSA, were excreted, apparently as a mechanism of cellular detoxification. Also, exogenous TGA and DMSA displayed similar inhibitory effects in strain 102F34. Thus, on the basis of these findings and other physiological and biochemical evidence, we infer that the toxicity of DMSA in wild-type strains ofS. meliloti stems from its catabolism via the GB demethylation pathway. This is the first report describing the toxicity of DMSA in any organism and a metabolically stable osmoprotectant (DMSP) in S. meliloti.

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Puglisi, Ivana, Emanuele La Bella, Ermes Ivan Rovetto, Angela Roberta Lo Piero et Andrea Baglieri. « Biostimulant Effect and Biochemical Response in Lettuce Seedlings Treated with A Scenedesmus quadricauda Extract ». Plants 9, n^o 1 (18 janvier 2020) : 123. http://dx.doi.org/10.3390/plants9010123.

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The use of natural biostimulants is becoming an attractive option in order to reduce the use of fertilizer and increase the yield of crops. In particular, algal extracts are suitable candidates as they positively affect plant physiology. Among crops, lettuce often requires the use of biostimulants to improve both the quality and quantity of production. The aim of this work is to investigate the potential use of a Scenedesmus quadricauda extract as a biostimulant in order to obtain sustainable cultivation and a reduction in the cost of chemical fertilizers in lettuce cultivation. Therefore, the effect of S. quadricauda extract on lettuce seedlings was explored by evaluating the physiological parameters, chlorophyll, carotenoid, and total protein contents as well as several plant enzymatic activities involved in primary and secondary metabolisms. The experiment was performed by growing plants on inert substrate (pumice) with a 16-h photoperiod, by carrying out two consecutive radical treatments, one week apart, using a concentration of the extract corresponding to 1 mg Corg L−1. Lettuce plants were sampled at 1, 4, and 7 days from the first treatment and 7 days from the second treatment. The results showed that the S. quadricauda extract positively affected the growth of lettuce seedlings, mainly acting at the shoot level, determining an increase in dry matter, chlorophylls, carotenoids, proteins, and influencing the activities of several enzymes involved in the primary metabolism.

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Rolton, Anne, Lesley Rhodes, Kate S. Hutson, Laura Biessy, Tony Bui, Lincoln MacKenzie, Jane E. Symonds et Kirsty F. Smith. « Effects of Harmful Algal Blooms on Fish and Shellfish Species : A Case Study of New Zealand in a Changing Environment ». Toxins 14, n^o 5 (14 mai 2022) : 341. http://dx.doi.org/10.3390/toxins14050341.

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Harmful algal blooms (HABs) have wide-ranging environmental impacts, including on aquatic species of social and commercial importance. In New Zealand (NZ), strategic growth of the aquaculture industry could be adversely affected by the occurrence of HABs. This review examines HAB species which are known to bloom both globally and in NZ and their effects on commercially important shellfish and fish species. Blooms of Karenia spp. have frequently been associated with mortalities of both fish and shellfish in NZ and the sub-lethal effects of other genera, notably Alexandrium spp., on shellfish (which includes paralysis, a lack of byssus production, and reduced growth) are also of concern. Climate change and anthropogenic impacts may alter HAB population structure and dynamics, as well as the physiological responses of fish and shellfish, potentially further compromising aquatic species. Those HAB species which have been detected in NZ and have the potential to bloom and harm marine life in the future are also discussed. The use of environmental DNA (eDNA) and relevant bioassays are practical tools which enable early detection of novel, problem HAB species and rapid toxin/HAB screening, and new data from HAB monitoring of aquaculture production sites using eDNA are presented. As aquaculture grows to supply a sizable proportion of the world’s protein, the effects of HABs in reducing productivity is of increasing significance. Research into the multiple stressor effects of climate change and HABs on cultured species and using local, recent, HAB strains is needed to accurately assess effects and inform stock management strategies.

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Rouphael, Youssef, et Giuseppe Colla. « Toward a Sustainable Agriculture Through Plant Biostimulants : From Experimental Data to Practical Applications ». Agronomy 10, n^o 10 (24 septembre 2020) : 1461. http://dx.doi.org/10.3390/agronomy10101461.

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Modern agriculture increasingly demands an alternative to synthetic chemicals (fertilizers and pesticides) in order to respond to the changes in international law and regulations, but also consumers’ needs for food without potentially toxic residues. Microbial (arbuscular mycorrhizal and plant growth promoting rhizobacteria: Azotobacter, Azospirillum and Rizhobium spp.) and non-microbial (humic substances, silicon, animal- and vegetal-based protein hydrolysate and macro- and micro-algal extracts) biostimulants represent a sustainable and effective alternative or complement for their synthetic counterparts, bringing benefits to the environment, biodiversity, human health and economy. The Special Issue “Toward a sustainable agriculture through plant biostimulants: from experimental data to practical applications” compiles 34 original research articles, 4 review papers and 1 brief report covering the implications of microbial and non-microbial biostimulants for improving seedling growth and crop performance, nutrient use efficiency and quality of the produce as well as enhancing the tolerance/resistance to a wide range of abiotic stresses in particular salinity, drought, nutrient deficiency and high temperature. The present compilation of high standard scientific papers on principles and practices of plant biostimulants will foster knowledge transfer among researchers, fertilizer and biostimulant industries, stakeholders, extension specialists and farmers, and it will enable a better understanding of the physiological and molecular mechanisms and application procedure of biostimulants in different cropping systems.

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Reyer, Antonella, Melanie Häßler, Sönke Scherzer, Shouguang Huang, Jesper Torbøl Pedersen, Khaled A. S. Al-Rasheid, Ernst Bamberg et al. « Channelrhodopsin-mediated optogenetics highlights a central role of depolarization-dependent plant proton pumps ». Proceedings of the National Academy of Sciences 117, n^o 34 (11 août 2020) : 20920–25. http://dx.doi.org/10.1073/pnas.2005626117.

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In plants, environmental stressors trigger plasma membrane depolarizations. Being electrically interconnected via plasmodesmata, proper functional dissection of electrical signaling by electrophysiology is basically impossible. The green algaChlamydomonas reinhardtiievolved blue light-excited channelrhodopsins (ChR1, 2) to navigate. When expressed in excitable nerve and muscle cells, ChRs can be used to control the membrane potential via illumination. InArabidopsisplants, we used the algal ChR2-light switches as tools to stimulate plasmodesmata-interconnected photosynthetic cell networks by blue light and monitor the subsequent plasma membrane electrical responses. Blue-dependent stimulations of ChR2 expressing mesophyll cells, resting around −160 to −180 mV, reproducibly depolarized the membrane potential by 95 mV on average. Following excitation, mesophyll cells recovered their prestimulus potential not without transiently passing a hyperpolarization state. By combining optogenetics with voltage-sensing microelectrodes, we demonstrate that plant plasma membrane AHA-type H+-ATPase governs the gross repolarization process. AHA2 protein biochemistry and functional expression analysis inXenopusoocytes indicates that the capacity of this H+pump to recharge the membrane potential is rooted in its voltage- and pH-dependent functional anatomy. Thus, ChR2 optogenetics appears well suited to noninvasively expose plant cells to signal specific depolarization signatures. From the responses we learn about the molecular processes, plants employ to channel stress-associated membrane excitations into physiological responses.

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Zaki, Mohamed A., Mohamed Ashour, Ahmed M. M. Heneash, Mohamed M. Mabrouk, Ahmed E. Alprol, Hanan M. Khairy, Abdelaziz M. Nour et al. « Potential Applications of Native Cyanobacterium Isolate (Arthrospira platensis NIOF17/003) for Biodiesel Production and Utilization of Its Byproduct in Marine Rotifer (Brachionus plicatilis) Production ». Sustainability 13, n^o 4 (6 février 2021) : 1769. http://dx.doi.org/10.3390/su13041769.

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To achieve strong, successful and commercial aqua-biotechnological microalgae applications, screening, isolation, molecular identification, and physiological characterizations are needed. In the current study, a native cyanobacteria strain Arthrospira platensis NIOF17/003 was isolated from the surface water of El-Khadra Lake, a saline-alkaline lake located in Wadi El-Natrun, Egypt. The cyanobacterium was phylogenetically identified by 16S rRNA molecular marker and deposited in the GenBank database (accession number MW396472). The late exponential phase of A. platensis NIOF17/003 was reached at the 8th day of growth using Zarrouk medium, with a recorded dry weight (DW) of 0.845 g L−1. The isolated strain showed 52% of protein, 14% of carbohydrate, biomass productivity of 143.83 mg L−1 day−1, 8.5% of lipid, and lipid productivity of 14.37 mg L−1 day−1. In general, the values of cetane number, iodine value, cold filter plugging point (52.9, 85.5 g I2/100 g oil, and −2.2 °C, respectively) of the isolated fatty acid methyl esters are in accordance with those suggested by international standards. Besides, applying algal-free lipid (FL) as biodiesel byproduct in the production of rotifer (Brachionus plicatilis) revealed that a 0.6 g L−1 FL significantly increased the rotifer population females carrying eggs, confirming that FL can be used efficiently for B. plicatilis production. The current study concluded that the new isolate A. platensis NIOF17/003 is a promising strain for double sustainable use in biodiesel production and aquaculture feed.

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Tessier, Romain, Juliane Calvez, Nadezda Khodorova, Alain Quinsac, Romain Kapel, Olivier Galet, Daniel Tomé, Gheorghe Airinei, Robert Benamouzig et Claire Gaudichon. « Confrontation of the “Dual Tracer” Indirect Method With Direct Ileal Sampling for Indispensable Amino Acid Digestibility of Sunflower Isolate in Humans ». Current Developments in Nutrition 5, Supplement_2 (juin 2021) : 884. http://dx.doi.org/10.1093/cdn/nzab048_019.

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Abstract Objectives The direct assessment of ileal samples of amino acid (AA) digestibility is invasive in humans. A less invasive but indirect method, namely « dual tracer » was recently developed. It relies on the plasma isotopic enrichment ratio of two labeled protein, a reference protein or alternately AAs labeled with 13C and the test protein labeled with 15N. This recent method has not yet been challenged against direct measurement of ileal digestibility. Methods Seven healthy volunteers were intubated with naso-ileal tube. Every 30min for 4h, they ingested sunflower biscuits containing a total of 25g of 15N intrinsically labeled sunflower protein isolate. They also ingested 60g chocolate containing a total of 400mg of a mix of 13C algal individual AAs. Ileal contents were collected continuously for 8h following the first meal and plasma was sampled every 30min for 4h and hourly between 4 and 8h. 15N and 13C indispensable amino acid (IAA) ileal digestibility were determined by measuring 15N and 13C enrichment in AAs by GC-C-IRMS and AA content by UHPLC in ileal effluent. Plasma and meal 15N and 13C IAA enrichment were measured by GC-C-IRMS. Isotopic 15N/13C ratio were determined using area under the curve value for each isotope. Results Using direct ileal sampling, average IAA ileal digestibility was: (i) 88.5 ± 5.0% for sunflower isolate (15N) with values ranged from 85.8 ± 5.1% for threonine to 91.1 ± 5.8% for methionine, and (ii) 97.6 ± 1.7% for free AAs (13C) with values ranged from 95.9 ± 2.3% for lysine to 98.8 ± 0.8% for phenylalanine. With the “dual tracer” method, digestibility of isoleucine, leucine, threonine and valine was significantly lower than with ileal determination (from 7.9% for threonine to 24.3% for leucine), Methionine and phenylalanine values were aberrant (over 100%) For lysine, the difference between the two methods was not statistically different (4.7%, p = 0.49). Conclusions With our methodological conditions, the “dual tracer” method provides physiological values for most IAA except methionine and phenylalanine. However, values were low compared to ileal digestibility (about 10%) and interindividual variability was high. This less invasive method is promising but requires methodological improvements. Funding Sources French Research National Agency (ANR), financial support of SOFIPROTEOL under the FASO Project PRODIAL.

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Deng, Yunyan, Fengting Li, Zhangxi Hu, Caixia Yue et Ying Zhong Tang. « The Implication Inferred from the Expression of Small Heat-Shock Protein Genes in Dinoflagellate Resting Cysts Buried in Marine Sediment ». Diversity 13, n^o 10 (27 septembre 2021) : 471. http://dx.doi.org/10.3390/d13100471.

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Dinoflagellates are unicellular eukaryotic microalgae, occupying pivotal niches in aquatic ecosystems with great ecological, biological, and economic significance. Small heat shock proteins (sHsps) are the most omnipresent, but the least conserved, family of molecular chaperones found in all domains of life. Although their common name (small Hsp) implies to exclusively stress their heat shock-responsive function, many sHsps in fact engage in a variety of physiological processes, from cell growth and proliferation to embryogenesis, development, differentiation, apoptosis, and even to human disease prevention. Recent years have greatly expanded our understanding of sHsps in higher plants; however, comprehensive study aiming to delineate the composition and expression pattern of dinoflagellate sHsp gene family has not yet been performed. In this study, we constructed dinoflagellate-specific environmental cDNA library from marine sediment and sequenced using the third-generation sequencing technique. Screening of sHsp genes from the library returned 13 entries with complete coding regions, which were considered to be transcriptionally activated in the natural community of dinoflagellate resting cysts. All the 13 dinoflagellate sHsps consisted of a solely characteristic α-crystallin domain, covering 88–123 amino acid residues with the typical A-X-X-X-N-G-V-L motif, flanked by variable N- and C-terminal extensions. Multiple alignment revealed considerable amino acid divergence (~26.7% average similarity) among them. An unexpected close relationship was revealed between dinoflagellate and green algal sHsps in the phylogenetic tree, seemingly reflecting a close evolutionary relationship of these sHsps themselves. We confirmed that sHsp mRNAs are expressed during dormancy of the resting cyst assemblages of dinoflagellates that were buried in marine sediment, which raised the possibility that the sHsp expression is part of the machinery of maintaining the dormancy or/and the adaptation to ambient conditions of dinoflagellate resting cysts. Our results, although preliminary, gained an important glance on the universal presence of sHsps in dinoflagellates and their active expressions in the assemblage of resting cysts that were buried in the marine sediment. The essentiality of sHsps functioning in resting cysts necessitate more intensive and extensive investigations on all possible functions of Hsps in dinoflagellates, a group of protists with vital ecological and biological importance.

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Luo, Qiulan, Xianghui Zou, Chaogang Wang, Yajun Li et Zhangli Hu. « The Roles of Cullins E3 Ubiquitin Ligases in the Lipid Biosynthesis of the Green Microalgae Chlamydomonas reinhardtii ». International Journal of Molecular Sciences 22, n^o 9 (29 avril 2021) : 4695. http://dx.doi.org/10.3390/ijms22094695.

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Microalgae-based biodiesel production has many advantages over crude oil extraction and refinement, thus attracting more and more concern. Protein ubiquitination is a crucial mechanism in eukaryotes to regulate physiological responses and cell development, which is highly related to algal biodiesel production. Cullins as the molecular base of cullin-RING E3 ubiquitin ligases (CRLs), which are the largest known class of ubiquitin ligases, control the life activities of eukaryotic cells. Here, three cullins (CrCULs) in the green microalgae Chlamydomonas reinhardtii were identified and characterized. To investigate the roles of CrCULs in lipid metabolism, the gene expression profiles of CrCULs under nutrition starvation were examined. Except for down-regulation under nitrogen starvation, the CrCUL3 gene was induced by sulfur and iron starvation. CrCUL2 seemed insensitive to nitrogen and sulfur starvation because it only had changes after treatment for eight days. CrCUL4 exhibited an expression peak after nitrogen starvation for two days but this declined with time. All CrCULs expressions significantly increased under iron deficiency at two and four days but decreased thereafter. The silencing of CrCUL2 and CrCUL4 expression using RNAi (RNA interference) resulted in biomass decline and lipids increase but an increase of 20% and 28% in lipid content after growth for 10 days, respectively. In CrCUL2 and CrCUL4 RNAi lines, the content of fatty acids, especially C16:0 and C18:0, notably increased as well. However, the lipid content and fatty acids of the CrCUL3 RNAi strain slightly changed. Moreover, the subcellular localization of CrCUL4 showed a nuclear distribution pattern. These results suggest CrCUL2 and CrCUL4 are regulators for lipid accumulation in C. reinhardtii. This study may offer an important complement of lipid biosynthesis in microalgae.

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Chen, Zhehua, Gan Gu, Ziyun Wang, Dong Ou, Xianrui Liang, Changwei Hu et Xi Li. « Effects of Tetracycline on Scenedesmus obliquus Microalgae Photosynthetic Processes ». International Journal of Molecular Sciences 23, n^o 18 (11 septembre 2022) : 10544. http://dx.doi.org/10.3390/ijms231810544.

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Tetracycline (TC) antibiotics can be detected worldwide in the aquatic environment due to their extensive use and low utilization efficiency, and they may affect the physiological processes of non-target organisms. In this study, the acute and sub-acute toxicities of TC on the freshwater microalga Scenedesmus obliquus were investigated with an emphasis on algal photosynthesis and transcription alterations during an 8 d TC exposure. The results showed that the IC10, IC30 and IC50 values were 1.8, 4.1 and 6.9 mg/L, respectively. During sub-acute exposure, the microalgae of the IC10 treatment was able to recover comparable growth to that of the control by day 7, while significantly lower cell densities were observed in the IC30 and IC50 treatments at the end of the exposure. The photosynthetic efficiency Fv/FM of S. obliquus first decreased as the TC concentration increased and then returned to a level close to that of the control on day 8, accompanied by an increase in photosynthetic activities, including light harvesting, electron transport and energy dissipation. Transcriptomic analysis of the IC10 treatment (1.8 mg/L TC) revealed that 2157 differentially expressed genes were up-regulated and 1629 were down-regulated compared with the control. KEGG and GO enrichments demonstrated that 28 photosynthesis-related genes involving light-harvesting chlorophyll protein complex, photosystem I, photosystem II, photosynthetic electron transport and enzymes were up-regulated, which may be the factor responsible for the enhanced photosynthesis and recovery of the microalgae. Our work may be helpful not only for gaining a better understanding of the environmental risk of TC at concentrations close to the real levels in natural waters, but also for explaining photosynthesis and related gene transcription induced by antibiotics.

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Lapina, Tatiana, Vladislav Statinov, Roman Puzanskiy et Elena Ermilova. « Arginine-Dependent Nitric Oxide Generation and S-Nitrosation in the Non-Photosynthetic Unicellular Alga Polytomella parva ». Antioxidants 11, n^o 5 (11 mai 2022) : 949. http://dx.doi.org/10.3390/antiox11050949.

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Nitric oxide (NO) acts as a key signaling molecule in higher plants, regulating many physiological processes. Several photosynthetic algae from different lineages are also known to produce NO. However, it remains unclear whether this messenger is produced by non-photosynthetic algae. Among these organisms, the colorless alga Polytomella parva is a special case, as it has lost not only its plastid genome, but also nitrate reductase and nitrite reductase. Up to now, the question of whether NO synthesis occurs in the absence of functional nitrate reductase (NR) and the assimilation of nitrates/nitrites in P. parva has not been elucidated. Using spectrofluorometric assays and confocal microscopy with NO-sensitive fluorescence dye, we demonstrate L-arginine-dependent NO synthesis by P. parva cells. Based on a pharmacological approach, we propose the existence of arginine-dependent NO synthase-like activity in this non-photosynthetic alga. GC-MS analysis provides primary evidence that P. parva synthesizes putrescine, which is not an NO source in this alga. Moreover, the generated NO causes the S-nitrosation of protein cysteine thiol groups. Together, our data argue for NR-independent NO synthesis and its active role in S-nitrosation as an essential post-translational modification in P. parva.

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Ji, Nanjing, Mingyang Xu, Junyue Wang, Junjia Li, Shishi Liu, Xueyao Yin, Xin Shen et Yuefeng Cai. « Physiological and Transcriptomic Response of Asiatic Hard Clam Meretrix meretrix to the Harmful Alga Heterosigma akashiwo ». Fishes 8, n^o 2 (22 janvier 2023) : 67. http://dx.doi.org/10.3390/fishes8020067.

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The ichthyotoxic raphidophyte Heterosigma akashiwo is associated with harmful algal blooms (HABs). Although the influence of H. akashiwo on fish has been reported, little is known of its effects on other marine organisms, such as shellfish. In this study, the physiological and transcriptomic responses of the Asiatic hard clam Meretrix meretrix to H. akashiwo were investigated. The results showed that clam survival was not influenced by H. akashiwo (at a concentration of 2 × 104 cells/mL), and M. meretrix eliminated the alga effectively after 48 h in co-culture. H. akashiwo did not alter the antioxidant capacity of the clams. However, 544 unigenes were found to be differentially expressed between the control and H. akashiwo-treated clams. Interestingly, the significant up-regulation of lysosome-related genes and transport proteins suggested remodeling of the clam metabolism possibly for digestion of H. akashiwo. In summary, our results indicate that the clam M. meretrix can effectively feed on H. akashiwo, and intensification of shellfish farming may be helpful to control and mitigate H. akashiwo blooms.

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Hemschemeier, Anja, Jessica Jacobs et Thomas Happe. « Biochemical and Physiological Characterization of the Pyruvate Formate-Lyase Pfl1 of Chlamydomonas reinhardtii, a Typically Bacterial Enzyme in a Eukaryotic Alga ». Eukaryotic Cell 7, n^o 3 (1 février 2008) : 518–26. http://dx.doi.org/10.1128/ec.00368-07.

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ABSTRACT The unicellular green alga Chlamydomonas reinhardtii has a special type of anaerobic metabolism that is quite unusual for eukaryotes. It has two oxygen-sensitive [Fe-Fe] hydrogenases (EC 1.12.7.2) that are coupled to photosynthesis and, in addition, a formate- and ethanol-producing fermentative metabolism, which was proposed to be initiated by pyruvate formate-lyase (Pfl; EC 2.3.1.54). Pfl enzymes are commonly found in prokaryotes but only rarely in eukaryotes. Both the hydrogen- and the formate/ethanol-producing pathways are involved in a sustained anaerobic metabolism of the alga, which can be induced by sulfur depletion in illuminated cultures. Before now, the presence of a Pfl protein in C. reinhardtii was predicted from formate secretion and the homology of the deduced protein of the PFL1 gene model to known Pfl enzymes. In this study, we proved the formate-producing activity of the putative Pfl1 enzyme by heterologous expression of the C. reinhardtii PFL1 cDNA in Escherichia coli and subsequent in vitro activity tests of the purified protein. Furthermore, a Pfl-deficient E. coli strain secretes formate when expressing the PFL1 cDNA of C. reinhardtii. We also examined the Pfl1 fermentation pathway of C. reinhardtii under the physiological condition of sulfur depletion. Genetic and biochemical analyses show that sulfur-depleted algae express genes encoding enzymes acting downstream of Pfl1 and also potentially ethanol-producing enzymes, such as pyruvate decarboxylase (EC 4.1.1.1) or pyruvate ferredoxin oxidoreductase (EC 1.2.7.1). The latter enzymes might substitute for Pfl1 activity when Pfl1 is specifically inhibited by hypophosphite.

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Monsonego Ornan, Efrat, et Ram Reifen. « Revisiting Protein Quality Assessment to Include Alternative Proteins ». Foods 11, n^o 22 (21 novembre 2022) : 3740. http://dx.doi.org/10.3390/foods11223740.

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The high demand for novel and existing sustainable protein sources (e.g., legumes, insects, algae, and cultured meat) to replace the animal-based sources is becoming crucial. This change in protein consumption calls for the re-evaluation of the current methods to assess their quality and bioavailability. The two conventional scores for PDCAAS (protein digestibility-corrected AA score) and DIAAS (Digestible Indispensable AA Score) have their limitations and have not been re-evaluated and updated to address plant and novel proteins’ quality. We suggest a sensitive physiological preclinical model that can rapidly and confidently address proteins from different sources. Our model is based on the postnatal growth, a major parameter for development and health in children, that influenced by environmental nutritional and lifestyle factors. Our results demonstrate that, with an appropriate amount of protein in the diet, almost all tested proteins performed as well as casein, the animal source. However, upon restriction (10% of calories), all alternative sources did not accomplish normal growth performance. Surprisingly, when compared to PDCAAS and DIAAS parameters obtained from the literature, no correlations were found between growth performance and these parameters, demonstrating their limitations.

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Pereira, Leonel. « Seaweeds as Source of Bioactive Substances and Skin Care Therapy—Cosmeceuticals, Algotheraphy, and Thalassotherapy ». Cosmetics 5, n^o 4 (22 novembre 2018) : 68. http://dx.doi.org/10.3390/cosmetics5040068.

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Riverine, estuarine, and coastal populations have always used algae in the development of home remedies that were then used to treat diverse health problems. The empirical knowledge of various generations originated these applications, and their mechanism of action is, in most cases, unknown, that is, few more scientific studies would have been described beyond simple collection and ethnographic recording. Nevertheless, recent investigations, carried out with the purpose of analyzing the components and causes that alter the functioning and the balance of our organism, are already giving their first results. Water, and especially sea water is considered as essential to life on our planet. It sings all the substances necessary and conducive to the development of the living being (minerals, catalysts, vitamins, amino acids, etc.). Oceans cover over 70% of Earth, being home to up to 90% of the organisms in the planet. Many rich resources and unique environments are provided by the ocean. Additionally, bioactive compounds that multiple marine organisms have a great potential to produce can be used as nutraceuticals, pharmaceuticals, and cosmeceuticals. Both primary and secondary metabolites are produced by algae. The first ones are directly implicated in development, normal growth, or reproduction conditions to perform physiological functions. Stress conditions, like temperature changes, salinity, environmental pollutants, or UV radiation exposure cause the performance of secondary metabolites. In algae, proteins, polysaccharides, fatty acids, and amino acids are primary metabolites and phenolic compounds, pigments, vitamins, sterols, and other bioactive agents, all produced in algae tissues, are secondary metabolites. These algal active constituents have direct relevance in cosmetics.

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Aichelman, Hannah E., et Daniel J. Barshis. « Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral Astrangia poculata along the Mid-Atlantic United States ». PeerJ 8 (18 novembre 2020) : e10201. http://dx.doi.org/10.7717/peerj.10201.

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Astrangia poculata is a temperate scleractinian coral that exists in facultative symbiosis with the dinoflagellate alga Breviolum psygmophilum across a range spanning the Gulf of Mexico to Cape Cod, Massachusetts. Our previous work on metabolic thermal performance of Virginia (VA) and Rhode Island (RI) populations of A. poculata revealed physiological signatures of cold (RI) and warm (VA) adaptation of these populations to their respective local thermal environments. Here, we used whole-transcriptome sequencing (mRNA-Seq) to evaluate genetic differences and identify potential loci involved in the adaptive signature of VA and RI populations. Sequencing data from 40 A. poculata individuals, including 10 colonies from each population and symbiotic state (VA-white, VA-brown, RI-white, and RI-brown), yielded a total of 1,808 host-associated and 59 algal symbiont-associated single nucleotide polymorphisms (SNPs) post filtration. Fst outlier analysis identified 66 putative high outlier SNPs in the coral host and 4 in the algal symbiont. Differentiation of VA and RI populations in the coral host was driven by putatively adaptive loci, not neutral divergence (Fst = 0.16, p = 0.001 and Fst = 0.002, p = 0.269 for outlier and neutral SNPs respectively). In contrast, we found evidence of neutral population differentiation in B. psygmophilum (Fst = 0.093, p = 0.001). Several putatively adaptive host loci occur on genes previously associated with the coral stress response. In the symbiont, three of four putatively adaptive loci are associated with photosystem proteins. The opposing pattern of neutral differentiation in B. psygmophilum, but not the A. poculata host, reflects the contrasting dynamics of coral host and algal symbiont population connectivity, dispersal, and gene by environment interactions.

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Perez, Jose L., et Tinchun Chu. « Effect of Zinc on Microcystis aeruginosa UTEX LB 2385 and Its Toxin Production ». Toxins 12, n^o 2 (30 janvier 2020) : 92. http://dx.doi.org/10.3390/toxins12020092.

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Cyanobacteria harmful algal blooms (CHABs) are primarily caused by man-made eutrophication and increasing climate-change conditions. The presence of heavy metal runoff in affected water systems may result in CHABs alteration to their ecological interactions. Certain CHABs produce by-products, such as microcystin (MC) cyanotoxins, that have detrimentally affected humans through contact via recreation activities within implicated water bodies, directly drinking contaminated water, ingesting biomagnified cyanotoxins in seafood, and/or contact through miscellaneous water treatment. Metallothionein (MT) is a small, metal-sequestration cysteine rich protein often upregulated within the stress response mechanism. This study focused on zinc metal resistance and stress response in a toxigenic cyanobacterium, Microcystis aeruginosa UTEX LB 2385, by monitoring cells with (0, 0.1, 0.25, and 0.5 mg/L) ZnCl2 treatment. Flow cytometry and phase contrast microscopy were used to evaluate physiological responses in cultures. Molecular assays and an immunosorbent assay were used to characterize the expression of MT and MC under zinc stress. The results showed that the half maximal inhibitory concentration (IC50) was 0.25 mg/L ZnCl2. Flow cytometry and phase contrast microscopy showed morphological changes occurred in cultures exposed to 0.25 and 0.5 mg/L ZnCl2. Quantitative PCR (qPCR) analysis of selected cDNA samples showed significant upregulation of Mmt through all time points, significant upregulation of mcyC at a later time point. ELISA MC-LR analysis showed extracellular MC-LR (µg/L) and intracellular MC-LR (µg/cell) quota measurements persisted through 15 days, although 0.25 mg/L ZnCl2 treatment produced half the normal cell biomass and 0.5 mg/L treatment largely inhibited growth. The 0.25 and 0.5 mg/L ZnCl2 treated cells demonstrated a ~40% and 33% increase of extracellular MC-LR(µg/L) equivalents, respectively, as early as Day 5 compared to control cells. The 0.5 mg/L ZnCl2 treated cells showed higher total MC-LR (µg/cell) quota yield by Day 8 than both 0 mg/L ZnCl2 control cells and 0.1 mg/L ZnCl2 treated cells, indicating release of MCs upon cell lysis. This study showed this Microcystis aeruginosa strain is able to survive in 0.25 mg/L ZnCl2 concentration. Certain morphological zinc stress responses and the upregulation of mt and mcy genes, as well as periodical increased extracellular MC-LR concentration with ZnCl2 treatment were observed.

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Godman, James E., Attila Molnár, David C. Baulcombe et Janneke Balk. « RNA silencing of hydrogenase(-like) genes and investigation of their physiological roles in the green alga Chlamydomonas reinhardtii ». Biochemical Journal 431, n^o 3 (11 octobre 2010) : 345–52. http://dx.doi.org/10.1042/bj20100932.

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The genome of the green alga Chlamydomonas reinhardtii encodes two [FeFe]-hydrogenases, HydA1 and HydA2, and the hydrogenase-like protein HYD3. The unique combination of these proteins in one eukaryotic cell allows for direct comparison of their in vivo functions, which have not been established for HydA2 and HYD3. Using an artificial microRNA silencing method developed recently, the expression of HydA1, HydA2 and HYD3 was specifically down-regulated. Silencing of HydA1 resulted in 4-fold lower hydrogenase protein and activity under anaerobic conditions. In contrast, silencing of HydA2 or HYD3 did not affect hydrogen production. Cell lines with strongly (>90%) decreased HYD3 transcript levels grew more slowly than wild-type. The activity of aldehyde oxidase, a cytosolic Fe-S enzyme, was decreased in HYD3-knockdown lines, whereas Fe-S dependent activities in the chloroplast and mitochondria were unaffected. In addition, the HYD3-knockdown lines grew poorly on hypoxanthine, indicating impaired function of xanthine dehydrogenase, another cytosolic Fe-S enzyme. The expression levels of selected genes in response to hypoxia were unaltered upon HYD3 silencing. Together, our results clearly distinguish the cellular roles of HydA1 and HYD3, and indicate that HYD3, like its yeast and human homologues, has an evolutionary conserved role in the biogenesis or maintenance of cytosolic Fe-S proteins.

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Ford, Megan M., Amanda L. Smythers, Evan W. McConnell, Sarah C. Lowery, Derrick R. J. Kolling et Leslie M. Hicks. « Inhibition of TOR in Chlamydomonas reinhardtii Leads to Rapid Cysteine Oxidation Reflecting Sustained Physiological Changes ». Cells 8, n^o 10 (28 septembre 2019) : 1171. http://dx.doi.org/10.3390/cells8101171.

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The target of rapamycin (TOR) kinase is a master metabolic regulator with roles in nutritional sensing, protein translation, and autophagy. In Chlamydomonas reinhardtii, a unicellular green alga, TOR has been linked to the regulation of increased triacylglycerol (TAG) accumulation, suggesting that TOR or a downstream target(s) is responsible for the elusive “lipid switch” in control of increasing TAG accumulation under nutrient limitation. However, while TOR has been well characterized in mammalian systems, it is still poorly understood in photosynthetic systems, and little work has been done to show the role of oxidative signaling in TOR regulation. In this study, the TOR inhibitor AZD8055 was used to relate reversible thiol oxidation to the physiological changes seen under TOR inhibition, including increased TAG content. Using oxidized cysteine resin-assisted capture enrichment coupled with label-free quantitative proteomics, 401 proteins were determined to have significant changes in oxidation following TOR inhibition. These oxidative changes mirrored characterized physiological modifications, supporting the role of reversible thiol oxidation in TOR regulation of TAG production, protein translation, carbohydrate catabolism, and photosynthesis through the use of reversible thiol oxidation. The delineation of redox-controlled proteins under TOR inhibition provides a framework for further characterization of the TOR pathway in photosynthetic eukaryotes.

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Johnson, Eric A., et Juliette T. J. Lecomte. « Characterization of the truncated hemoglobin THB1 from protein extracts of Chlamydomonas reinhardtii ». F1000Research 3 (4 décembre 2014) : 294. http://dx.doi.org/10.12688/f1000research.5873.1.

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Truncated hemoglobins (TrHbs) belong to the hemoglobin superfamily, but unlike their distant vertebrate relatives, little is known about their principal physiologic functions. Several TrHbs have been studied in vitro using engineered recombinant peptides. These efforts have resulted in a wealth of knowledge about the chemical properties of TrHbs and have generated interesting functional leads. However, questions persist as to how closely these engineered proteins mimic their counterparts within the native cell. In this report, we examined THB1, one of several TrHbs from the model organism Chlamydomonas reinhardtii. The recombinant THB1 (rTHB1) has favorable solubility and stability properties and is an excellent candidate for in vitro characterization. Linking rTHB1 to the in vivo protein is a critical step in understanding the physiologic function of this protein. Using a simplified three-step purification protocol, 3.5-L batches of algal culture were processed to isolate 50–60 μL fractions enriched in THB1. These fractions of C. reinhardtii proteins were then subjected to physical examination. Using gel mobility, optical absorbance and immunoreactivity, THB1 was identified in these enriched fractions and its presence correlated with that of a heme molecule. Mass spectrometry confirmed this cofactor to be a type b heme and revealed that the native protein contains a co-translational modification consistent with amino-terminal acetylation following initial methionine cleavage.

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Boesger, Jens, Volker Wagner, Wolfram Weisheit et Maria Mittag. « Analysis of Flagellar Phosphoproteins from Chlamydomonas reinhardtii ». Eukaryotic Cell 8, n^o 7 (8 mai 2009) : 922–32. http://dx.doi.org/10.1128/ec.00067-09.

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ABSTRACT Cilia and flagella are cell organelles that are highly conserved throughout evolution. For many years, the green biflagellate alga Chlamydomonas reinhardtii has served as a model for examination of the structure and function of its flagella, which are similar to certain mammalian cilia. Proteome analysis revealed the presence of several kinases and protein phosphatases in these organelles. Reversible protein phosphorylation can control ciliary beating, motility, signaling, length, and assembly. Despite the importance of this posttranslational modification, the identities of many ciliary phosphoproteins and knowledge about their in vivo phosphorylation sites are still missing. Here we used immobilized metal affinity chromatography to enrich phosphopeptides from purified flagella and analyzed them by mass spectrometry. One hundred forty-one phosphorylated peptides were identified, belonging to 32 flagellar proteins. Thereby, 126 in vivo phosphorylation sites were determined. The flagellar phosphoproteome includes different structural and motor proteins, kinases, proteins with protein interaction domains, and many proteins whose functions are still unknown. In several cases, a dynamic phosphorylation pattern and clustering of phosphorylation sites were found, indicating a complex physiological status and specific control by reversible protein phosphorylation in the flagellum.

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Pozdnyakov, Ilya, Olga Matantseva et Sergei Skarlato. « Consensus channelome of dinoflagellates revealed by transcriptomic analysis sheds light on their physiology ». Algae 36, n^o 4 (15 décembre 2021) : 315–26. http://dx.doi.org/10.4490/algae.2021.36.12.2.

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Ion channels are membrane protein complexes mediating passive ion flux across the cell membranes. Every organism has a certain set of ion channels that define its physiology. Dinoflagellates are ecologically important microorganisms characterized by effective physiological adaptability, which backs up their massive proliferations that often result in harmful blooms (red tides). In this study, we used a bioinformatics approach to identify homologs of known ion channels that belong to 36 ion channel families. We demonstrated that the versatility of the dinoflagellate physiology is underpinned by a high diversity of ion channels including homologs of animal and plant proteins, as well as channels unique to protists. The analysis of 27 transcriptomes allowed reconstructing a consensus ion channel repertoire (channelome) of dinoflagellates including the members of 31 ion channel families: inwardly-rectifying potassium channels, two-pore domain potassium channels, voltage-gated potassium channels (Kv), tandem Kv, cyclic nucleotide-binding domain-containing channels (CNBD), tandem CNBD, eukaryotic ionotropic glutamate receptors, large-conductance calcium-activated potassium channels, intermediate/small-conductance calcium-activated potassium channels, eukaryotic single-domain voltage-gated cation channels, transient receptor potential channels, two-pore domain calcium channels, four-domain voltage-gated cation channels, cation and anion Cys-loop receptors, small-conductivity mechanosensitive channels, large-conductivity mechanosensitive channels, voltage-gated proton channels, inositole-1,4,5- trisphosphate receptors, slow anion channels, aluminum-activated malate transporters and quick anion channels, mitochondrial calcium uniporters, voltage-dependent anion channels, vesicular chloride channels, ionotropic purinergic receptors, animal volage-insensitive cation channels, channelrhodopsins, bestrophins, voltage-gated chloride channels H+/Cl- exchangers, plant calcium-permeable mechanosensitive channels, and trimeric intracellular cation channels. Overall, dinoflagellates represent cells able to respond to physical and chemical stimuli utilizing a wide range of Gprotein coupled receptors- and Ca2+-dependent signaling pathways. The applied approach not only shed light on the ion channel set in dinoflagellates, but also provided the information on possible molecular mechanisms underlying vital cellular processes dependent on the ion transport.

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Bhushan, Bharat, Kwang Joo Kwak, Samit Gupta et Stephen C. Lee. « Nanoscale adhesion, friction and wear studies of biomolecules on silane polymer-coated silica and alumina-based surfaces ». Journal of The Royal Society Interface 6, n^o 37 (4 novembre 2008) : 719–33. http://dx.doi.org/10.1098/rsif.2008.0398.

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Proteins on biomicroelectromechanical systems (BioMEMS) confer specific molecular functionalities. In planar FET sensors (field-effect transistors, a class of devices whose protein-sensing capabilities we demonstrated in physiological buffers), interfacial proteins are analyte receptors, determining sensor molecular recognition specificity. Receptors are bound to the FET through a polymeric interface, and gross disruption of interfaces that removes a large percentage of receptors or inactivates large fractions of them diminishes sensor sensitivity. Sensitivity is also determined by the distance between the bound analyte and the semiconductor. Consequently, differential properties of surface polymers are design parameters for FET sensors. We compare thickness, surface roughness, adhesion, friction and wear properties of silane polymer layers bound to oxides (SiO 2 and Al 2 O 3 , as on AlGaN HFETs). We compare those properties of the film–substrate pairs after an additional deposition of biotin and streptavidin. Adhesion between protein and device and interfacial friction properties affect FET reliability because these parameters affect wear resistance of interfaces to abrasive insult in vivo . Adhesion/friction determines the extent of stickage between the interface and tissue and interfacial resistance to mechanical damage. We document systematic, consistent differences in thickness and wear resistance of silane films that can be correlated with film chemistry and deposition procedures, providing guidance for rational interfacial design for planar AlGaN HFET sensors.

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Heddad, Mounia, et Iwona Adamska. « The Evolution of Light Stress Proteins in Photosynthetic Organisms ». Comparative and Functional Genomics 3, n^o 6 (2002) : 504–10. http://dx.doi.org/10.1002/cfg.221.

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The Elip (early light-inducible protein) family in pro- and eukaryotic photosynthetic organisms consists of more than 100 different stress proteins. These proteins accumulate in photosynthetic membranes in response to light stress and have photoprotective functions. At the amino acid level, members of the Elip family are closely related to light-harvesting chlorophylla/b-binding (Cab) antenna proteins of photosystem I and II, present in higher plants and some algae. Based on their predicted secondary structure, members of the Elip family are divided into three groups: (a) one-helix Hlips (high light-induced proteins), also called Scps (small Cab-like proteins) or Ohps (one-helix proteins); (b) two-helix Seps (stress-enhanced proteins); and (c) three-helix Elips and related proteins. Despite having different physiological functions it is believed that eukaryotic three-helix Cab proteins evolved from the prokaryotic Hlips through a series of duplications and fusions. In this review we analyse the occurrence of Elip family members in various photosynthetic prokaryotic and eukaryotic organisms and discuss their evolutionary relationship with Cab proteins.

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COTTON, GENEVIÈVE, et THÊRÈSE VANDEN DRIESSCHE. « Identification of calmodulin in Acetabularia : its distribution and physiological significance ». Journal of Cell Science 87, n^o 2 (1 mars 1987) : 337–47. http://dx.doi.org/10.1242/jcs.87.2.337.

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In order to test whether calmodulin is present in Acetabularia, material was isolated from this alga, using the chlorpromazine affinity method. This resulted in the purification of a protein with the correct mobility on SDS-polyacrylamide gels. This protein reacted with anti-calmodulin in dot blots, using an immunogold, silver-enhanced method, so we conclude that calmodulin is present in the alga, although at a very low concentration (200–450 pg per gram wet weight). The localization of calmodulin was studied, using fluphenazine fluorescence. The pattern is described; the chief feature being the concentration of fluorescence towards the tip during both the slow and the rapid growth phases. Fluorescence is also observed at the insertion points of hairs on the stalk and decreases in intensity between hairs of successive order. The apical fluorescence vanishes when cap formation begins. The localization of calmodulin parallels that of calcium studied by means of chlorotetracycline and aequorin. Expecting inhibitors of calmodulin to produce physiological effects, we studied the growth of whole and anucleate Acetabularia in the presence of trifluoperazine (TFP). TFP severely inhibited growth and cap formation, as did lanthanum. A circadian rhythm of sensitivity to these inhibitors was found. The hypothesis is put forward that calcium and calmodulin are important during a critical photosensitive phase of the circadian cycle.

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Verspreet, Joran, Lise Soetemans, Caoimhe Gargan, Maria Hayes et Leen Bastiaens. « Nutritional Profiling and Preliminary Bioactivity Screening of Five Micro-Algae Strains Cultivated in Northwest Europe ». Foods 10, n^o 7 (1 juillet 2021) : 1516. http://dx.doi.org/10.3390/foods10071516.

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This study aimed to map the nutritional profile and bioactivities of five microalgae that can be grown in Northwest Europe or areas with similar cultivation conditions. Next to the biochemical composition, the in vitro digestibility of carbohydrates, proteins, and lipids was studied for Chlamydomonas nivalis, Porphyridium purpureum, Chlorella vulgaris, Nannochloropsis gaditana, and Scenedesmus species biomass. These microalgae were also assessed for their ability to inhibit the angiotensin-1-converting enzyme (ACE-1, EC 3.4.15.1), which is known to play a role in the control of blood pressure in mammals. Large differences in organic matter solubility after digestion suggested that a cell disruption step is needed to unlock the majority of the nutrients from N. gaditana and Scenedesmus species biomass. Significant amounts of free glucose (16.4–25.5 g glucose/100 g dry algae) were detected after the digestion of C. nivalis, P. purpureum, and disrupted Scenedesmus. The fatty acid profiles showed major variations, with particularly high Ω-3 fatty acid levels found in N. gaditana (5.5 ± 0.5 g/100 g dry algae), while lipid digestibility ranged from 33.3 ± 6.5% (disrupted N. gaditana) to 67.1 ± 11.2% (P. purpureum). C. vulgaris and disrupted N. gaditana had the highest protein content (45–46% of dry matter), a nitrogen solubility after digestion of 65–71%, and the degree of protein hydrolysis was determined as 31% and 26%, respectively. Microalgae inhibited ACE-1 by 73.4–87.1% at physiologically relevant concentrations compared to a commercial control. These data can assist algae growers and processors in selecting the most suitable algae species for food or feed applications.

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Volná, Adriana, Martin Bartas, Jakub Nezval, Vladimír Špunda, Petr Pečinka et Jiří Červeň. « Searching for G-Quadruplex-Binding Proteins in Plants : New Insight into Possible G-Quadruplex Regulation ». BioTech 10, n^o 4 (22 septembre 2021) : 20. http://dx.doi.org/10.3390/biotech10040020.

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G-quadruplexes are four-stranded nucleic acid structures occurring in the genomes of all living organisms and viruses. It is increasingly evident that these structures play important molecular roles; generally, by modulating gene expression and overall genome integrity. For a long period, G-quadruplexes have been studied specifically in the context of human promoters, telomeres, and associated diseases (cancers, neurological disorders). Several of the proteins for binding G-quadruplexes are known, providing promising targets for influencing G-quadruplex-related processes in organisms. Nonetheless, in plants, only a small number of G-quadruplex binding proteins have been described to date. Thus, we aimed to bioinformatically inspect the available protein sequences to find the best protein candidates with the potential to bind G-quadruplexes. Two similar glycine and arginine-rich G-quadruplex-binding motifs were described in humans. The first is the so-called “RGG motif”-RRGDGRRRGGGGRGQGGRGRGGGFKG, and the second (which has been recently described) is known as the “NIQI motif”-RGRGRGRGGGSGGSGGRGRG. Using this general knowledge, we searched for plant proteins containing the above mentioned motifs, using two independent approaches (BLASTp and FIMO scanning), and revealed many proteins containing the G4-binding motif(s). Our research also revealed the core proteins involved in G4 folding and resolving in green plants, algae, and the key plant model organism, Arabidopsis thaliana. The discovered protein candidates were annotated using STRINGdb and sorted by their molecular and physiological roles in simple schemes. Our results point to the significant role of G4-binding proteins in the regulation of gene expression in plants.

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Prakash, R., et A. D. Jokhan. « Photosynthetic rate and biochemical composition of green algae Ulva flexuosa (Wulfen) J. Agardh as potential indicators of environmental stress in the intertidal zones ». South Pacific Journal of Natural and Applied Sciences 30, n^o 1 (2012) : 44. http://dx.doi.org/10.1071/sp12004.

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Photosynthetic rate and biochemical composition total chlorophyll (TC), total soluble protein (TSP) and total soluble carbohydrates (TSC) were determined for Ulva flexuosa, a green marine algae collected from Nasese, Lami and Laucala Beach areas in Suva, Fiji Islands. Ulva flexuosa from Laucala Beach area had the highest photosynthetic rates, TC and TSP content, while algae from Nasese area had the highest amount of TSC. Algae from Lami area had the lowest amount of photosynthesis rate, TC, TSP and TSC. High photosynthetic rate and biochemical content were mainly due to the presence of high levels of nitrogen in the area. Algae thrived in Laucala Beach and Nasese area where nitrogen content was high. Low photosynthetic rate and biochemical composition were recorded in algae from the Lami area, which was apparently the most polluted area. It appeared that conditions in Lami area were intolerable to U. flexuosa. Algae collected from the three sites differed in the measured parameters with respect to the differences in the pH, temperature and nitrogen levels indicating that physiological responses of algae could be used as indicators to monitor the environmental quality of the intertidal zones.

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Kargın, Hilal, et Murat Bilgüven. « MICROALGAE - MACROALGAE BASED NUTRACEUTICALS AND THEIR BENEFITS ». Current Trends in Natural Sciences 11, n^o 21 (31 juillet 2022) : 232–46. http://dx.doi.org/10.47068/ctns.2022.v11i21.026.

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Algae produce some substances that have a positive effect on human health. Algae are known as sources suitable for use in food and foods with the bioactive components they produce at a high rate. These ingredients are called nutraceuticals. Nutraceuticals are products that have physiological benefits and are protective against chronic diseases and are generally recommended to be used as medicines. Bioactive nutraceuticals from aquaculture; fish oil (ω-3), seal blubber oil, algae oil, shark liver oil, shark cartilage, chitin, chitosan as well as enzymes, peptides and their components, vitamins (vitamin A,D,E, β carotene), macroalgae and its components, protein hydrolysates and other products. It is known that these high-value components in algae regulate immunity, prevent diabetes, oxidation, inflammation, high cholesterol and cardiovascular diseases, and have positive effects against obesity and unbalanced nutrition. In this review, information is given about micro and macroalgae-based nutraceuticals, their application areas and potential health benefits.

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Schober, Alexander F., Carolina Rï¿½o Bï¿½rtulos, Annsophie Bischoff, Bernard Lepetit, Ansgar Gruber et Peter G. Kroth. « Organelle Studies and Proteome Analyses of Mitochondria and Plastids Fractions from the Diatom Thalassiosira pseudonana ». Plant and Cell Physiology 60, n^o 8 (10 juin 2019) : 1811–28. http://dx.doi.org/10.1093/pcp/pcz097.

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Abstract Diatoms are unicellular algae and evolved by secondary endosymbiosis, a process in which a red alga-like eukaryote was engulfed by a heterotrophic eukaryotic cell. This gave rise to plastids of remarkable complex architecture and ultrastructure that require elaborate protein importing, trafficking, signaling and intracellular cross-talk pathways. Studying both plastids and mitochondria and their distinctive physiological pathways in organello may greatly contribute to our understanding of photosynthesis, mitochondrial respiration and diatom evolution. The isolation of such complex organelles, however, is still demanding, and existing protocols are either limited to a few species (for plastids) or have not been reported for diatoms so far (for mitochondria). In this work, we present the first isolation protocol for mitochondria from the model diatom Thalassiosira pseudonana. Apart from that, we extended the protocol so that it is also applicable for the purification of a high-quality plastids fraction, and provide detailed structural and physiological characterizations of the resulting organelles. Isolated mitochondria were structurally intact, showed clear evidence of mitochondrial respiration, but the fractions still contained residual cell fragments. In contrast, plastid isolates were virtually free of cellular contaminants, featured structurally preserved thylakoids performing electron transport, but lost most of their stromal components as concluded from Western blots and mass spectrometry. Liquid chromatography electrospray-ionization mass spectrometry studies on mitochondria and thylakoids, moreover, allowed detailed proteome analyses which resulted in extensive proteome maps for both plastids and mitochondria thus helping us to broaden our understanding of organelle metabolism and functionality in diatoms.

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Fan, Gongduan, Minchen Bao, Bo Wang, Shimin Wu, Lingxi Luo, Binhui Li et Jiuhong Lin. « Inhibitory Effects of Cu2O/SiO2 on the Growth of Microcystis aeruginosa and Its Mechanism ». Nanomaterials 9, n^o 12 (22 novembre 2019) : 1669. http://dx.doi.org/10.3390/nano9121669.

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In this study, a novel nanomaterial Cu2O/SiO2 was synthesized based on nano-SiO2, and the inhibitory effects of different concentrations of Cu2O/SiO2 on the growth of Microcystis aeruginosa (M. aeruginosa) were studied. At the same time, the mechanism of Cu2O/SiO2 inhibiting the growth of M. aeruginosa was discussed from the aspects of Cu2+ release, chlorophyll a destruction, oxidative damage, total protein, and the phycobiliprotein of algae cells. The results showed that low doses of Cu2O/SiO2 could promote the growth of M. aeruginosa. When the concentration of Cu2O/SiO2 reached 10 mg/L, it exhibited the best inhibitory effect on M. aeruginosa, and the relative inhibition rate reached 294% at 120 h. In terms of the algae inhibition mechanism, Cu2O/SiO2 will release Cu2+ in the solution and induce metal toxicity to algae cells. At the same time, M. aeruginosa might suffer oxidative damage by the free radicals, such as hydroxyl radicals released from Cu2O/SiO2, affecting the physiological characteristics of algae cells. Moreover, after the addition of Cu2O/SiO2, a decrease in the content of chlorophyll a, total soluble protein, and phycobiliprotein was found, which eventually led to the death of M. aeruginosa. Therefore, Cu2O/SiO2 can be used as an algaecide inhibitor for controlling harmful cyanobacteria blooms.

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Shimizu, Takayuki, Rintaro Yasuda, Yui Mukai, Ryo Tanoue, Tomohiro Shimada, Sousuke Imamura, Kan Tanaka, Satoru Watanabe et Tatsuru Masuda. « Proteomic analysis of haem-binding protein from Arabidopsis thaliana and Cyanidioschyzon merolae ». Philosophical Transactions of the Royal Society B : Biological Sciences 375, n^o 1801 (4 mai 2020) : 20190488. http://dx.doi.org/10.1098/rstb.2019.0488.

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Chloroplast biogenesis involves the coordinated expression of the plastid and nuclear genomes, requiring information to be sent from the nucleus to the developing chloroplasts and vice versa. Although it is well known how the nucleus controls chloroplast development, it is still poorly understood how the plastid communicates with the nucleus. Currently, haem is proposed as a plastid-to-nucleus (retrograde) signal that is involved in various physiological regulations, such as photosynthesis-associated nuclear genes expression and cell cycle in plants and algae. However, components that transduce haem-dependent signalling are still unidentified. In this study, by using haem-immobilized high-performance affinity beads, we performed proteomic analysis of haem-binding proteins from Arabidopsis thaliana and Cyanidioschyzon merolae . Most of the identified proteins were non-canonical haemoproteins localized in various organelles. Interestingly, half of the identified proteins were nucleus proteins, some of them have a similar function or localization in either or both organisms. Following biochemical analysis of selective proteins demonstrated haem binding. This study firstly demonstrates that nucleus proteins in plant and algae show haem-binding properties. This article is part of the theme issue ‘Retrograde signalling from endosymbiotic organelles’.

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