Littérature scientifique sur le sujet « Metabolomics and trascriptomics analysis »
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Articles de revues sur le sujet "Metabolomics and trascriptomics analysis"
Worley, Bradley, et Robert Powers. « Multivariate Analysis in Metabolomics ». Current Metabolomics 1, no 1 (1 novembre 2012) : 92–107. http://dx.doi.org/10.2174/2213235x11301010092.
Texte intégralWorley, Bradley, et Robert Powers. « Multivariate Analysis in Metabolomics ». Current Metabolomics 1, no 1 (1 novembre 2012) : 92–107. http://dx.doi.org/10.2174/2213235x130108.
Texte intégralChen, Yang, En-Min Li et Li-Yan Xu. « Guide to Metabolomics Analysis : A Bioinformatics Workflow ». Metabolites 12, no 4 (15 avril 2022) : 357. http://dx.doi.org/10.3390/metabo12040357.
Texte intégralIKEDA, Kazutaka, et Takeshi BAMBA. « Hydrophobic Metabolite Analysis in Metabolomics ». Journal of the Mass Spectrometry Society of Japan 65, no 5 (2017) : 199–202. http://dx.doi.org/10.5702/massspec.s17-48.
Texte intégralJansen, J. J., H. C. J. Hoefsloot, H. F. M. Boelens, J. van der Greef et A. K. Smilde. « Analysis of longitudinal metabolomics data ». Bioinformatics 20, no 15 (15 avril 2004) : 2438–46. http://dx.doi.org/10.1093/bioinformatics/bth268.
Texte intégralJansen, Jeroen J., et Johan A. Westerhuis. « Editorial–data analysis in metabolomics ». Metabolomics 8, S1 (24 mars 2012) : 1–2. http://dx.doi.org/10.1007/s11306-012-0418-4.
Texte intégralSaglik, Ayhan, Ismail Koyuncu, Ataman Gonel, Hamza Yalcin, Fatih Mehmet Adibelli et Muslum Toptan. « Metabolomics analysis in pterygium tissue ». International Ophthalmology 39, no 10 (8 janvier 2019) : 2325–33. http://dx.doi.org/10.1007/s10792-018-01069-2.
Texte intégralBarnes, S., H. P. Benton, K. Casazza, S. J. Cooper, X. Cui, X. Du, J. Engler et al. « Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future ». Journal of Mass Spectrometry 51, no 8 (août 2016) : ii—iii. http://dx.doi.org/10.1002/jms.3676.
Texte intégralBarnes, Stephen, H. Paul Benton, Krista Casazza, Sara J. Cooper, Xiangqin Cui, Xiuxia Du, Jeffrey Engler et al. « Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future ». Journal of Mass Spectrometry 51, no 8 (15 juillet 2016) : 535–48. http://dx.doi.org/10.1002/jms.3780.
Texte intégralMoseley, Hunter N. B. « ERROR ANALYSIS AND PROPAGATION IN METABOLOMICS DATA ANALYSIS ». Computational and Structural Biotechnology Journal 4, no 5 (janvier 2013) : e201301006. http://dx.doi.org/10.5936/csbj.201301006.
Texte intégralThèses sur le sujet "Metabolomics and trascriptomics analysis"
GUARNERIO, Chiara Francesca. « Effects of enod40 overexpression in non legume plants ». Doctoral thesis, Università degli Studi di Verona, 2010. http://hdl.handle.net/11562/343215.
Texte intégralENOD40 is an Early Nodulin gene that it is know to play a key role in nodule formation in response to interaction of legume plants with symbiotic Rhizobium bacteria. Homologues of ENOD40 genes have been identified in several plant species and its expression is observed during the initiation and development of new organs, such as nodules, lateral roots, young leaves and stipule primordia. ENOD40 gene has an unusual structure: it lacks a long open reading frame, but several short ORFs are present. Moreover, at nucleotide level, two regions, named box1 and box2, are highly conserved among all ENOD40 genes. In box 1 region, a highly conserved ORF (ORF 1) is present and it seems to encode a putative peptide of 10-13 amino acids. Furthermore, the gene contains regions corresponding to conserved secondary structures of the transcript. Six domains were identified in ENOD40 mRNA and two of these domains are strongly conserved among legume and non legume species. Despite several researches, the roles of the ENOD40 gene has not been so far completely elucidated. Moreover, whether the biological activity should be ascribed to RNA or peptide, or both, is still unclear. For this reason, the two main goals of the research are: to investigate the possible presence of the putative peptide encoded by box1 of the ENOD40 gene in BY-2 cells and to investigate the role of ENOD40 gene in non legume plants, using Arabidopsis thaliana. That ENOD40 could act, at least in part, through the peptide encode by box1 is suggested by several observations, but no one have revealed biochemically the putative peptide. In the first part of the work a purification procedure consisting of membrane cut-off, ion exchange chromatography, solid exchange extraction, HPLC-DAD and mass spectrometry (LC-ESI-MS and MALDI-TOF) was set up to search for the putative peptide in BY-2 cells overexpressing NtENOD40 gene. Unfortunately, despite several attempts to set up the purification procedure and the different and sensitive techniques used for the analysis of the putatively peptide-enriched fractions, only MALDI-TOF PSD analysis gave an initial clue of the possible presence of the peptide in ENOD40 overexpressing BY2 cells. In the second part of the work, the possible role of the gene has been investigated through the metabolomics and transcriptomics characterization of ENOD40 overexpressing Arabidopsis plants. Metabolite and transcriptional profiles of the three Arabidopsis lines overexpressing soybean ENOD40 gene were acquired and compared to those obtained from wild type plants. Afterward, biomarker analysis of metabolomic and transcriptomic dataset was used in order to identify the metabolites and transcripts that showed the higher correlation with the overexpression of ENOD40 gene. In the metabolite profiles, glucosinolate metabolites characterized all the three transformed lines compared with the wild type, while flavonoids mainly characterized wild type plants. With regard to transcriptional profiling, most of the genes upregulated in the three transformed lines (twelve out of twenty-three), were correlated with processes occurring in the cell wall. Thus, the cell wall is the mechanical determinant of cell shape and size ENOD40 gene could be involved in a process that controls the composition and the dynamics of the cell wall. In conclusion, previous morphological studies on the same Arabidopsis thaliana ENOD40 transformed lines used in this work have been showed that these plants are characterised by normal organs containing smaller cells, and on ENOD40 transfected Arabidopsis protoplasts are characterized by reduced expansion, suggested that the gene could have some role in keeping the cells in a “young” state . The observation that ENOD40 transformed Arabidopsis lines accumulate high levels of glucosinolates, that are typical of the young tissues, suggests that, also from the metabolic point of view, the transformed cells have features typical of younger cells, whereas wild type cells use their metabolic resources to accumulate flavonoids, another class of secondary metabolites more typical of differentiated state. With regard to transcriptomic analysis, since transformed plants are morphologically characterized by small cell size, the genes upregulated in the transformed lines, involved in cell wall dynamics and composition, could be involved in the prevention of cell expansion. The role of ENOD40 in maintenance of cells in a “young state” is also supported by the expression patterns of ENOD40 genes reported in literature.
Yet, Idil. « Integrated epigenomics and metabolomics analysis in twins ». Thesis, King's College London (University of London), 2016. https://kclpure.kcl.ac.uk/portal/en/theses/integrated-epigenomics-and-metabolomics-analysis-in-twins(4d0fb76b-cc2b-4e31-8950-a7ffb5b91363).html.
Texte intégralMuhamad, Ali Howbeer. « Metabolomics investigation of microbial cell factories ». Thesis, University of Manchester, 2015. https://www.research.manchester.ac.uk/portal/en/theses/metabolomics-investigation-of-microbial-cell-factories(2e2f5f58-d38a-4c77-966b-56ce92aec619).html.
Texte intégralKlünder, Christina. « Metabolomics for toxicity analysis using the chlorophyte Scenedesmus vacuolatus / ». Leipzig [u.a.], 2009. http://www.ufz.de/data/ufzdiss_2_2009_9947.pdf.
Texte intégralGloaguen, Yoann. « Supporting analysis, visualisation and biological interpretation of metabolomics datasets ». Thesis, University of Glasgow, 2017. http://theses.gla.ac.uk/8433/.
Texte intégralAbdelrazig, Salah M. A. « Mass spectrometry for high-throughput metabolomics analysis of urine ». Thesis, University of Nottingham, 2015. http://eprints.nottingham.ac.uk/30600/.
Texte intégralBeisken, Stephan Andreas. « Informatics for tandem mass spectrometry-based metabolomics ». Thesis, University of Cambridge, 2014. https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.708325.
Texte intégralDuffy, Kate I. « Application of metabolomics to the analysis of ancient organic residues ». Thesis, University of Birmingham, 2015. http://etheses.bham.ac.uk//id/eprint/5670/.
Texte intégralDaub, Carsten O. « Analysis of integrated transcriptomics and metabolomics data a systems biology approach / ». [S.l. : s.n.], 2004. http://pub.ub.uni-potsdam.de/2004/0025/daub.pdf.
Texte intégralDaub, Carsten Oliver. « Analysis of integrated transcriptomics and metabolomics data : a systems biology approach ». Phd thesis, Universität Potsdam, 2004. http://opus.kobv.de/ubp/volltexte/2005/138/.
Texte intégralWir verwenden das informationstheoretische Konzept der wechselseitigen Information, das ursprünglich für diskrete Daten definiert ist, als Ähnlichkeitsmaß und schlagen eine Erweiterung eines für gewöhnlich für die Anwendung auf kontinuierliche biologische Daten verwendeten Algorithmus vor. Wir vergleichen unseren Ansatz mit bereits existierenden Algorithmen. Wir entwickeln ein geschwindigkeitsoptimiertes Computerprogramm für die Anwendung der wechselseitigen Information auf große Datensätze. Weiterhin konstruieren und implementieren wir einen web-basierten Dienst fuer die Analyse von integrierten Daten, die durch unterschiedliche Messmethoden gemessen wurden. Die Anwendung auf biologische Daten zeigt biologisch relevante Gruppierungen, und rekonstruierte Signalnetzwerke zeigen Übereinstimmungen mit physiologischen Erkenntnissen.
Recent high-throughput technologies enable the acquisition of a variety of complementary data and imply regulatory networks on the systems biology level. A common approach to the reconstruction of such networks is the cluster analysis which is based on a similarity measure.
We use the information theoretic concept of the mutual information, that has been originally defined for discrete data, as a measure of similarity and propose an extension to a commonly applied algorithm for its calculation from continuous biological data. We compare our approach to previously existing algorithms. We develop a performance optimised software package for the application of the mutual information to large-scale datasets. Furthermore, we design and implement a web-based service for the analysis of integrated data measured with different technologies. Application to biological data reveals biologically relevant groupings and reconstructed signalling networks show agreements with physiological findings.
Livres sur le sujet "Metabolomics and trascriptomics analysis"
K, Saito, Dixon Richard A. 1951- et Willmitzer Lothar, dir. Plant metabolomics. Berlin : Springer, 2006.
Trouver le texte intégralXia, Yinglin, Jun Sun et Xiaotao Shen, Ph.D., Stanford University School of Medicine. Statistical Data Analysis of Microbiomes and Metabolomics. Washington, DC, USA : American Chemical Society, 2022. http://dx.doi.org/10.1021/acsinfocus.7e5035.
Texte intégralLi, Shuzhao, dir. Computational Methods and Data Analysis for Metabolomics. New York, NY : Springer US, 2020. http://dx.doi.org/10.1007/978-1-0716-0239-3.
Texte intégralWolfram, Weckwerth, dir. Metabolomics : Methods and protocols. Totowa, N.J : Humana Press, 2007.
Trouver le texte intégralDatta, Susmita, et Bart J. A. Mertens, dir. Statistical Analysis of Proteomics, Metabolomics, and Lipidomics Data Using Mass Spectrometry. Cham : Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-45809-0.
Texte intégralRoessner, Ute, et Daniel Anthony Dias. Metabolomics tools for natural product discovery : Methods and protocols. New York : Humana Press, 2013.
Trouver le texte intégralBagchi, Debasis. Genomics, proteomics, and metabolomics in nutraceuticals and functional foods. Ames, Iowa : Wiley-Blackwell, 2010.
Trouver le texte intégralBagchi, Debasis, Anand Swaroop et Manashi Bagchi. Genomics, proteomics and metabolomics in nutraceuticals and functional foods. Chichester, West Sussex : John Wiley & Sons, Inc., 2015.
Trouver le texte intégralArmitage, Emily G. Correlation-based network analysis of cancer metabolism : A new systems biology approach in metabolomics. New York : Springer, 2014.
Trouver le texte intégralDebasis, Bagchi, Lau Francis et Bagchi Manashi, dir. Genomics, proteomics, and metabolomics in nutraceuticals and functional foods. Ames, Iowa : Wiley-Blackwell, 2010.
Trouver le texte intégralChapitres de livres sur le sujet "Metabolomics and trascriptomics analysis"
Scholz, Matthias, et Joachim Selbig. « Visualization and Analysis of Molecular Data ». Dans Metabolomics, 87–104. Totowa, NJ : Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-244-1_6.
Texte intégralSchuster, Stefan, Axel Kamp et Mikhail Pachkov. « Understanding the Roadmap of Metabolism by Pathway Analysis ». Dans Metabolomics, 199–226. Totowa, NJ : Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-244-1_12.
Texte intégralSteuer, Ralf, Katja Morgenthal, Wolfram Weckwerth et Joachim Selbig. « A Gentle Guide to the Analysis of Metabolomic Data ». Dans Metabolomics, 105–26. Totowa, NJ : Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-244-1_7.
Texte intégralTolstikov, Vladimir V., Oliver Fiehn et Nobuo Tanaka. « Application of Liquid Chromatography-Mass Spectrometry Analysis in Metabolomics ». Dans Metabolomics, 141–55. Totowa, NJ : Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-244-1_9.
Texte intégralLin, Shili, Denise Scholtens et Sujay Datta. « Metabolomics Data Analysis ». Dans Bioinformatics Methods, 211–32. Boca Raton : Chapman and Hall/CRC, 2022. http://dx.doi.org/10.1201/9781315153728-10.
Texte intégralWu, Jun-Fang, et Yulan Wang. « Multivariate Analysis of Metabolomics Data ». Dans Plant Metabolomics, 105–22. Dordrecht : Springer Netherlands, 2014. http://dx.doi.org/10.1007/978-94-017-9291-2_5.
Texte intégralWittmann, Christoph, et Jean-Charles Portais. « Metabolic Flux Analysis ». Dans Metabolomics in Practice, 285–312. Weinheim, Germany : Wiley-VCH Verlag GmbH & Co. KGaA, 2013. http://dx.doi.org/10.1002/9783527655861.ch12.
Texte intégralLubbe, Andrea, Kashif Ali, Robert Verpoorte et Young Hae Choi. « NMR-Based Metabolomics Analysis ». Dans Metabolomics in Practice, 209–38. Weinheim, Germany : Wiley-VCH Verlag GmbH & Co. KGaA, 2013. http://dx.doi.org/10.1002/9783527655861.ch9.
Texte intégralViolante, Sara, Mirela Berisa, Tiffany H. Thomas et Justin R. Cross. « Stable Isotope Tracers for Metabolic Pathway Analysis ». Dans High-Throughput Metabolomics, 269–83. New York, NY : Springer New York, 2019. http://dx.doi.org/10.1007/978-1-4939-9236-2_17.
Texte intégralMarkley, John L., Hesam Dashti, Jonathan R. Wedell, William M. Westler et Hamid R. Eghbalnia. « Tools for Enhanced NMR-Based Metabolomics Analysis ». Dans NMR-Based Metabolomics, 413–27. New York, NY : Springer New York, 2019. http://dx.doi.org/10.1007/978-1-4939-9690-2_23.
Texte intégralActes de conférences sur le sujet "Metabolomics and trascriptomics analysis"
Porokhin, Vladimir, Xinmeng Li et Soha Hassoun. « Pathway Enrichment Analysis for Untargeted Metabolomics ». Dans BCB '17 : 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. New York, NY, USA : ACM, 2017. http://dx.doi.org/10.1145/3107411.3108233.
Texte intégralHu, Ting, Weidong Zhang, Zhaozhi Fan, Guang Sun, Sergei Likhodi, Edward Randell et Guangju Zhai. « METABOLOMICS DIFFERENTIAL CORRELATION NETWORK ANALYSIS OF OSTEOARTHRITIS ». Dans Proceedings of the Pacific Symposium. WORLD SCIENTIFIC, 2015. http://dx.doi.org/10.1142/9789814749411_0012.
Texte intégralUllah, Ehsan, Raghvendra Mall, Reda Rawi et Halima Bensmail. « Statistical and Network Analysis of Metabolomics Data ». Dans BCB '16 : ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. New York, NY, USA : ACM, 2016. http://dx.doi.org/10.1145/2975167.2985683.
Texte intégralLivengood, Philip, Ross Maciejewski, Wei Chen et David S. Ebert. « A visual analysis system for metabolomics data ». Dans 2011 IEEE Symposium on Biological Data Visualization (BioVis). IEEE, 2011. http://dx.doi.org/10.1109/biovis.2011.6094050.
Texte intégralCardoso, Sara, Miguel Rocha, Telma Afonso et Marcelo Maraschin. « WebSpecmine : a website for metabolomics data analysis and mining. » Dans 3rd International Electronic Conference on Metabolomics. Basel, Switzerland : MDPI, 2018. http://dx.doi.org/10.3390/iecm-3-05842.
Texte intégralLaatikainen, Reino, Pekka Laatikainen et Elias Hakalehto. « QUANTITATIVE QUANTUM MECHANICAL NMR ANALYSIS : THE SUPERIOR TOOL FOR ANALYSIS OF BIOFLUIDS ». Dans The 1st International Electronic Conference on Metabolomics. Basel, Switzerland : MDPI, 2016. http://dx.doi.org/10.3390/iecm-1-c005.
Texte intégralYuan, P. « Lipid Metabolomics Analysis of Pulmonary Veno-Occlusive Disease ». Dans American Thoracic Society 2022 International Conference, May 13-18, 2022 - San Francisco, CA. American Thoracic Society, 2022. http://dx.doi.org/10.1164/ajrccm-conference.2022.205.1_meetingabstracts.a1189.
Texte intégralGonzález-Domínguez, Raúl, Ana Sayago et Ángeles Fernández-Recamales. « Comparison of complementary statistical analysis approaches in metabolomic food traceability ». Dans 3rd International Electronic Conference on Metabolomics. Basel, Switzerland : MDPI, 2018. http://dx.doi.org/10.3390/iecm-3-05839.
Texte intégralTheodoridis, Georgios, Olga Begou, Olga Deda, Helen Gika, Ioannis Taitzoglou, Nikolaos Raikos et Agapios Agapiou. « URINE AND FECES METABOLOMICS-BASED ANALYSIS OF CAROB TREATED RATS ». Dans The 2nd International Electronic Conference on Metabolomics. Basel, Switzerland : MDPI, 2017. http://dx.doi.org/10.3390/iecm-2-04992.
Texte intégralLaatikainen, Reino, Pekka Laatikainen et Hannu Maaheimo. « Quantitative Quantum Mechanical Spectral Analysis (qQMSA) of Spectra of 1000+1 Chemical Shifts and Other Biological Systems ». Dans 3rd International Electronic Conference on Metabolomics. Basel, Switzerland : MDPI, 2018. http://dx.doi.org/10.3390/iecm-3-05844.
Texte intégralRapports d'organisations sur le sujet "Metabolomics and trascriptomics analysis"
Aharoni, Asaph, Zhangjun Fei, Efraim Lewinsohn, Arthur Schaffer et Yaakov Tadmor. System Approach to Understanding the Metabolic Diversity in Melon. United States Department of Agriculture, juillet 2013. http://dx.doi.org/10.32747/2013.7593400.bard.
Texte intégralRabinowitz, Joshua D. Final Technical Report--Quantitative analysis of metabolic regulation by integration of metabolomics, proteomics, and fluxomics. Office of Scientific and Technical Information (OSTI), décembre 2018. http://dx.doi.org/10.2172/1487155.
Texte intégralLidstrom, Mary E., Ludmila Chistoserdova, Marina G. Kalyuzhnaya, Victoria J. Orphan et David A. Beck. Systems level insights into alternate methane cycling modes in a freshwater lake via community transcriptomics, metabolomics and nano-SIMS analysis. Office of Scientific and Technical Information (OSTI), août 2014. http://dx.doi.org/10.2172/1149958.
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