Artículos de revistas sobre el tema "Spatial transcriptomic"
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Li, Youcheng, Leann Lac, Qian Liu y Pingzhao Hu. "ST-CellSeg: Cell segmentation for imaging-based spatial transcriptomics using multi-scale manifold learning". PLOS Computational Biology 20, n.º 6 (27 de junio de 2024): e1012254. http://dx.doi.org/10.1371/journal.pcbi.1012254.
Texto completoChen, Tsai-Ying, Li You, Jose Angelito U. Hardillo y Miao-Ping Chien. "Spatial Transcriptomic Technologies". Cells 12, n.º 16 (10 de agosto de 2023): 2042. http://dx.doi.org/10.3390/cells12162042.
Texto completoLv, Zhuo, Shuaijun Jiang, Shuxin Kong, Xu Zhang, Jiahui Yue, Wanqi Zhao, Long Li y Shuyan Lin. "Advances in Single-Cell Transcriptome Sequencing and Spatial Transcriptome Sequencing in Plants". Plants 13, n.º 12 (18 de junio de 2024): 1679. http://dx.doi.org/10.3390/plants13121679.
Texto completoGorbunova, Vera. "COMPARATIVE TRANSCRIPTOMIC OF LONGEVITY". Innovation in Aging 7, Supplement_1 (1 de diciembre de 2023): 432. http://dx.doi.org/10.1093/geroni/igad104.1423.
Texto completoCallaway, Edward M., Hong-Wei Dong, Joseph R. Ecker, Michael J. Hawrylycz, Z. Josh Huang, Ed S. Lein, John Ngai et al. "A multimodal cell census and atlas of the mammalian primary motor cortex". Nature 598, n.º 7879 (6 de octubre de 2021): 86–102. http://dx.doi.org/10.1038/s41586-021-03950-0.
Texto completoAdabbo, Bruno, Simona Migliozzi, Luciano Garofano, Young Taek Oh, Sakir H. Gultekin, Fulvio D'Angelo, Evan R. Roberts et al. "EPCO-27. RECONSTRUCTION OF THE SPATIAL ECOSYSTEM OF GLIOBLASTOMA REVEALS RECURRENT RELATIONSHIPS BETWEEN TUMOR CELL STATES AND TUMOR MICROENVIRONMENT". Neuro-Oncology 25, Supplement_5 (1 de noviembre de 2023): v129. http://dx.doi.org/10.1093/neuonc/noad179.0490.
Texto completoHe, Jiang, Bin Wang, Justin He, Renchao Chen, Benjamin Patterson, Sudhir Tattikota, Timothy Wiggin et al. "Abstract LB333: Improved spatially resolved single-cell transcriptomic imaging in archival tissues with MERSCOPE". Cancer Research 84, n.º 7_Supplement (5 de abril de 2024): LB333. http://dx.doi.org/10.1158/1538-7445.am2024-lb333.
Texto completoJiang, Peng. "Abstract IA002: Inference of intercellular signaling activities in tumor spatial and single-cell transcriptomics, with applications in identifying cancer immunotherapy targets". Molecular Cancer Therapeutics 22, n.º 12_Supplement (1 de diciembre de 2023): IA002. http://dx.doi.org/10.1158/1535-7163.targ-23-ia002.
Texto completoAli, Abdullah Mahmood y Azra Raza. "scRNAseq and High-Throughput Spatial Analysis of Tumor and Normal Microenvironment in Solid Tumors Reveal a Possible Origin of Circulating Tumor Hybrid Cells". Cancers 16, n.º 7 (8 de abril de 2024): 1444. http://dx.doi.org/10.3390/cancers16071444.
Texto completoHe, Jiang, Justin He, Timothy Wiggin, Rob Foreman, Renchao Chen, Nicolas Fernandez y George Emanuel. "Abstract 4195: Spatially resolved single cell transcriptomic profiling in formalin-fixed paraffin-embedded (FFPE) tissues". Cancer Research 83, n.º 7_Supplement (4 de abril de 2023): 4195. http://dx.doi.org/10.1158/1538-7445.am2023-4195.
Texto completoShengquan, Chen, Zhang Boheng, Chen Xiaoyang, Zhang Xuegong y Jiang Rui. "stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics". Bioinformatics 37, Supplement_1 (1 de julio de 2021): i299—i307. http://dx.doi.org/10.1093/bioinformatics/btab298.
Texto completoLee, Youjin, Derek Bogdanoff, Yutong Wang, George C. Hartoularos, Jonathan M. Woo, Cody T. Mowery, Hunter M. Nisonoff et al. "XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment". Science Advances 7, n.º 17 (abril de 2021): eabg4755. http://dx.doi.org/10.1126/sciadv.abg4755.
Texto completoGupta, Anushka, Stephen Williams, Lauren Gutgasell, Benton Veire, Ace Santiago, Hardeep Singh, Rena Chan et al. "Spatially resolved whole-transcriptome analysis with simultaneous highly multiplexed immune cell epitope detection in multiple cancer tissues". Journal of Immunology 210, n.º 1_Supplement (1 de mayo de 2023): 251.04. http://dx.doi.org/10.4049/jimmunol.210.supp.251.04.
Texto completoYin, Yifeng, Jerald Sapida, David Sukovich, David Patterson y Augusto Tentori. "Abstract 3645: Unraveling spatial complexity of the tumor microenvironment: A whole transcriptomic perspective with Visium HD". Cancer Research 84, n.º 6_Supplement (22 de marzo de 2024): 3645. http://dx.doi.org/10.1158/1538-7445.am2024-3645.
Texto completoDuan, Hao, Qingchen Zhang, Feifei Cui, Quan Zou y Zilong Zhang. "MVST: Identifying spatial domains of spatial transcriptomes from multiple views using multi-view graph convolutional networks". PLOS Computational Biology 20, n.º 9 (5 de septiembre de 2024): e1012409. http://dx.doi.org/10.1371/journal.pcbi.1012409.
Texto completoBae, Sungwoo, Hongyoon Choi y Dong Soo Lee. "Discovery of molecular features underlying the morphological landscape by integrating spatial transcriptomic data with deep features of tissue images". Nucleic Acids Research 49, n.º 10 (22 de febrero de 2021): e55-e55. http://dx.doi.org/10.1093/nar/gkab095.
Texto completoLein, Ed, Lars E. Borm y Sten Linnarsson. "The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing". Science 358, n.º 6359 (5 de octubre de 2017): 64–69. http://dx.doi.org/10.1126/science.aan6827.
Texto completoNoronha, Katelyn J., Jennifer M. Garbarino, Daniel Massucci, Abigail R. Tyree y Colin Ng. "Abstract 4407: Simultaneous spatial epigenomic and transcriptomic analysis of gastric adenocarcinoma reveals regulatory patterns governing tumor and microenvironment architecture at the cellular level". Cancer Research 84, n.º 6_Supplement (22 de marzo de 2024): 4407. http://dx.doi.org/10.1158/1538-7445.am2024-4407.
Texto completoJiang, Rui, Zhen Li, Yuhang Jia, Siyu Li y Shengquan Chen. "SINFONIA: Scalable Identification of Spatially Variable Genes for Deciphering Spatial Domains". Cells 12, n.º 4 (13 de febrero de 2023): 604. http://dx.doi.org/10.3390/cells12040604.
Texto completoSaqib, Jahanzeb, Beomsu Park, Yunjung Jin, Junseo Seo, Jaewoo Mo y Junil Kim. "Identification of Niche-Specific Gene Signatures between Malignant Tumor Microenvironments by Integrating Single Cell and Spatial Transcriptomics Data". Genes 14, n.º 11 (31 de octubre de 2023): 2033. http://dx.doi.org/10.3390/genes14112033.
Texto completoLi, Zhuliu, Tianci Song, Jeongsik Yong y Rui Kuang. "Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion". PLOS Computational Biology 17, n.º 4 (7 de abril de 2021): e1008218. http://dx.doi.org/10.1371/journal.pcbi.1008218.
Texto completoDries, Ruben, Jiaji Chen, Natalie del Rossi, Mohammed Muzamil Khan, Adriana Sistig y Guo-Cheng Yuan. "Advances in spatial transcriptomic data analysis". Genome Research 31, n.º 10 (octubre de 2021): 1706–18. http://dx.doi.org/10.1101/gr.275224.121.
Texto completoMirchia, Kanish, Soo-Jin Cho, Alyssa T. Reddy, Line Jacques, Melike Pekmezci, Arie Perry, David Raleigh y Harish Vasudevan. "EPCO-04. SPATIAL TRANSCRIPTOMIC ANALYSIS OF MALIGNANT PERIPHERAL NERVE SHEATH TUMORS REVEALS THERAPEUTICALLY TARGETABLE MOLECULAR SIGNATURES IN REGIONS UNDERGOING HISTOPATHOLOGIC TRANSFORMATION". Neuro-Oncology 25, Supplement_5 (1 de noviembre de 2023): v124. http://dx.doi.org/10.1093/neuonc/noad179.0469.
Texto completoNesterenko, Maksim y Aleksei Miroliubov. "From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)". F1000Research 11 (27 de mayo de 2022): 583. http://dx.doi.org/10.12688/f1000research.110492.1.
Texto completoNesterenko, Maksim y Aleksei Miroliubov. "From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)". F1000Research 11 (9 de enero de 2023): 583. http://dx.doi.org/10.12688/f1000research.110492.2.
Texto completoRitter, M., C. Blume, B. Patel, Y. Tang, A. Patel, N. Berghaus, Z. Seferbekova et al. "OS10.8.A APPLICATIONS OF NOVEL FFPE BASED TECHNOLOGIES FOR THE DIAGNOSTICS OF GLIOMAS". Neuro-Oncology 25, Supplement_2 (1 de septiembre de 2023): ii23. http://dx.doi.org/10.1093/neuonc/noad137.068.
Texto completoLee, Amos C., Sumin Lee y Sunghoon Kwon. "Abstract 6781: Spatial omics using spatially-resolved laser-activated cell sorting for cancer biomarker discovery". Cancer Research 83, n.º 7_Supplement (4 de abril de 2023): 6781. http://dx.doi.org/10.1158/1538-7445.am2023-6781.
Texto completoWood, Colin Stuart, Joao Da Silva Filho, Andrew Cameron, Assya Legrini, Holly Leslie, Tengyu Zhang, Yoana Doncheva et al. "Abstract 5072: Multi-omic, multi-scale characterisation of colorectal cancer defines spatiotemporal patterns of recurrence". Cancer Research 84, n.º 6_Supplement (22 de marzo de 2024): 5072. http://dx.doi.org/10.1158/1538-7445.am2024-5072.
Texto completoJamshidi, Raehannah, Lyra Griffiths, Rich Johnston, Vaunita Parihar, Frank Schneider y Adam Marcus. "Abstract 1153: Using spatial transcriptomics to dissect cell to cell cooperation in lung adenocarcinoma". Cancer Research 84, n.º 6_Supplement (22 de marzo de 2024): 1153. http://dx.doi.org/10.1158/1538-7445.am2024-1153.
Texto completoMisra, Adwiteeya, Cameron D. Baker, Elizabeth M. Pritchett, Kimberly N. Burgos Villar, John M. Ashton y Eric M. Small. "Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics". Journal of Cardiovascular Development and Disease 9, n.º 1 (21 de diciembre de 2021): 1. http://dx.doi.org/10.3390/jcdd9010001.
Texto completoMirchia, Kanish, Abrar Choudhury, Tara Joseph, Janeth Ochoa Birrueta, Joanna Phillips, Aparna Bhaduri, Elizabeth Crouch, Arie Perry y David Raleigh. "EPCO-48. THE SINGLE-CELL AND SPATIAL TRANSCRIPTOMIC ARCHITECTURE OF MENINGEAL SOLITARY FIBROUS TUMORS PHENOCOPIES CEREBRAL VASCULAR DEVELOPMENT AND HOMEOSTASIS". Neuro-Oncology 25, Supplement_5 (1 de noviembre de 2023): v135. http://dx.doi.org/10.1093/neuonc/noad179.0510.
Texto completoWu, Yuesong, Aoqi Xie, Ian Loveless, Madison George, Kendyll Gartrelle, Julie Clark, Daniel Salas-Escabillas et al. "Abstract C107: Use of spatial transcriptomics to identify molecular features associated with African American heritage in pancreatic cancer". Cancer Research 84, n.º 2_Supplement (16 de enero de 2024): C107. http://dx.doi.org/10.1158/1538-7445.panca2023-c107.
Texto completoAkilesh, Shreeram, Kammi J. Henriksen, Roberto F. Nicosia, Charles E. Alpers y Kelly D. Smith. "Spatial Transcriptomic Profiling of Collapsing Glomerulopathy". Journal of the American Society of Nephrology 32, n.º 10S (octubre de 2021): 519. http://dx.doi.org/10.1681/asn.20213210s1519a.
Texto completoChoe, Kyongho, Unil Pak, Yu Pang, Wanjun Hao y Xiuqin Yang. "Advances and Challenges in Spatial Transcriptomics for Developmental Biology". Biomolecules 13, n.º 1 (12 de enero de 2023): 156. http://dx.doi.org/10.3390/biom13010156.
Texto completoJeon, Hyeongseon, Juan Xie, Yeseul Jeon, Kyeong Joo Jung, Arkobrato Gupta, Won Chang y Dongjun Chung. "Statistical Power Analysis for Designing Bulk, Single-Cell, and Spatial Transcriptomics Experiments: Review, Tutorial, and Perspectives". Biomolecules 13, n.º 2 (24 de enero de 2023): 221. http://dx.doi.org/10.3390/biom13020221.
Texto completoWu, Zhichao, Karen Dazelle, Hye-Jung Chung y Kenneth Aldape. "TMIC-25. SPATIAL TRANSCRIPTOMIC LANDSCAPE OF DIFFUSE GLIOMA". Neuro-Oncology 24, Supplement_7 (1 de noviembre de 2022): vii276—vii277. http://dx.doi.org/10.1093/neuonc/noac209.1069.
Texto completoWilliams, Cameron Gerard, Jessica A. Engel, Megan S. F. Soon, Evan Murray, Fei Chen y Ashraful Haque. "Studying lymphocyte differentiation in the spleen via spatial transcriptomics". Journal of Immunology 206, n.º 1_Supplement (1 de mayo de 2021): 98.55. http://dx.doi.org/10.4049/jimmunol.206.supp.98.55.
Texto completoda Costa, André Luiz N. Targino, Jingxian Liu, Chia-Kuei Mo, Erik Storrs, Austin N. Southard-Smith, Reyka G. Jayasinghe, Julia T. Wang et al. "Abstract 2341: Morph: A feature extraction toolset for spatial transcriptomics". Cancer Research 84, n.º 6_Supplement (22 de marzo de 2024): 2341. http://dx.doi.org/10.1158/1538-7445.am2024-2341.
Texto completoChen, Ce, Yining Ge y Lingli Lu. "Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants". Frontiers in Plant Science 14 (11 de agosto de 2023). http://dx.doi.org/10.3389/fpls.2023.1185377.
Texto completoShao, Xin, Chengyu Li, Haihong Yang, Xiaoyan Lu, Jie Liao, Jingyang Qian, Kai Wang et al. "Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk". Nature Communications 13, n.º 1 (30 de julio de 2022). http://dx.doi.org/10.1038/s41467-022-32111-8.
Texto completoShang, Lulu y Xiang Zhou. "Spatially aware dimension reduction for spatial transcriptomics". Nature Communications 13, n.º 1 (23 de noviembre de 2022). http://dx.doi.org/10.1038/s41467-022-34879-1.
Texto completoDanan, Charles H., Kay Katada, Louis R. Parham y Kathryn E. Hamilton. "Spatial transcriptomics add a new dimension to our understanding of the gut". American Journal of Physiology-Gastrointestinal and Liver Physiology, 6 de diciembre de 2022. http://dx.doi.org/10.1152/ajpgi.00191.2022.
Texto completoRocque, Brittany, Kate Guion, Pranay Singh, Sarah Bangerth, Lauren Pickard, Jashdeep Bhattacharjee, Sofia Eguizabal et al. "Technical optimization of spatially resolved single-cell transcriptomic datasets to study clinical liver disease". Scientific Reports 14, n.º 1 (13 de febrero de 2024). http://dx.doi.org/10.1038/s41598-024-53993-2.
Texto completoPont, Frédéric, Juan Pablo Cerapio, Pauline Gravelle, Laetitia Ligat, Carine Valle, Emeline Sarot, Marion Perrier et al. "Single-cell spatial explorer: easy exploration of spatial and multimodal transcriptomics". BMC Bioinformatics 24, n.º 1 (27 de enero de 2023). http://dx.doi.org/10.1186/s12859-023-05150-1.
Texto completoWirth, Johannes, Nina Huber, Kelvin Yin, Sophie Brood, Simon Chang, Celia P. Martinez-Jimenez y Matthias Meier. "Spatial transcriptomics using multiplexed deterministic barcoding in tissue". Nature Communications 14, n.º 1 (18 de marzo de 2023). http://dx.doi.org/10.1038/s41467-023-37111-w.
Texto completoJohnston, Kevin G., Bereket T. Berackey, Kristine M. Tran, Alon Gelber, Zhaoxia Yu, Grant R. MacGregor, Eran A. Mukamel, Zhiqun Tan, Kim N. Green y Xiangmin Xu. "Single-cell spatial transcriptomics reveals distinct patterns of dysregulation in non-neuronal and neuronal cells induced by the Trem2R47H Alzheimer’s risk gene mutation". Molecular Psychiatry, 5 de agosto de 2024. http://dx.doi.org/10.1038/s41380-024-02651-0.
Texto completoMao, Guangyao, Yi Yang, Zhuojuan Luo, Chengqi Lin y Peng Xie. "SpatialQC: automated quality control for spatial transcriptome data". Bioinformatics, 25 de julio de 2024. http://dx.doi.org/10.1093/bioinformatics/btae458.
Texto completoXu, Zhicheng, Weiwen Wang, Tao Yang, Ling Li, Xizheng Ma, Jing Chen, Jieyu Wang et al. "STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization". Nucleic Acids Research, 11 de noviembre de 2023. http://dx.doi.org/10.1093/nar/gkad933.
Texto completoZhang, Chao, Renchao Chen y Yi Zhang. "Accurate inference of genome-wide spatial expression with iSpatial". Science Advances 8, n.º 34 (26 de agosto de 2022). http://dx.doi.org/10.1126/sciadv.abq0990.
Texto completoFan, Zhen, Runsheng Chen y Xiaowei Chen. "SpatialDB: a database for spatially resolved transcriptomes". Nucleic Acids Research, 12 de noviembre de 2019. http://dx.doi.org/10.1093/nar/gkz934.
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